Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047579 Camellia sinensis var. sinensis HOM05D008835 ORTHO05D011094 1.2e-129 468.0 273 100.0
CANSAT01G3131 Cannabis sativa HOM05D008835 ORTHO05D011094 1.0e-45 189.1 195 49.7
Dinv10471 Davidia involucrata HOM05D008835 ORTHO05D011094 4.3e-44 183.7 194 59.8
Cc11_g07380 Coffea canephora HOM05D008835 ORTHO05D011094 7.4e-44 183.0 197 49.2
Sc15g0000240 Simmondsia chinensis HOM05D008835 ORTHO05D011094 2.0e-41 174.9 195 55.4
Cpa.g.sc2.190 Carica papaya HOM05D008835 ORTHO05D011094 1.2e-38 165.6 196 52.6
Hma1.2p1_0277F.1_g111660 Hydrangea macrophylla HOM05D008835 ORTHO05D011094 4.7e-38 163.7 194 62.4
Hma1.2p1_0277F.1_g111665 Hydrangea macrophylla HOM05D008835 ORTHO05D011094 4.7e-38 163.7 194 62.4
AL5G10840 Arabidopsis lyrata HOM05D008835 ORTHO05D011094 5.1e-37 160.2 191 49.7
AT2G01740 Arabidopsis thaliana HOM05D008835 ORTHO05D011094 5.1e-37 160.2 191 49.2
Sp2g13190 Schrenkiella parvula HOM05D008835 ORTHO05D011094 8.8e-37 159.5 191 51.8
Thhalv10003932m.g Eutrema salsugineum HOM05D008835 ORTHO05D011094 7.4e-36 156.4 191 49.7
Aa31LG2G8150 Aethionema arabicum HOM05D008835 ORTHO05D011094 2.2e-35 154.8 196 47.4
CARHR144310 Cardamine hirsuta HOM05D008835 ORTHO05D011094 9.1e-34 149.4 197 47.2
Nn4g26594 Nelumbo nucifera HOM05D008835 ORTHO05D011094 5.2e-29 133.7 122 53.3
Carub.0005s0069 Capsella rubella HOM05D008835 ORTHO05D011094 5.7e-28 130.2 116 51.7
Lj3P864T25 Lonicera japonica HOM05D008835 ORTHO05D011094 5.7e-28 130.2 84 77.4
Prupe.1G333800 Prunus persica HOM05D008835 ORTHO05D011094 1.7e-27 128.6 189 46.6
C09p30430 Brassica napus HOM05D008835 ORTHO05D011094 2.2e-27 128.3 198 44.4
RcHm_v2.0_Chr4g0443001 Rosa chinensis HOM05D008835 ORTHO05D011094 6.3e-27 126.7 186 47.3
TAR374G1374 Trochodendron aralioides HOM05D008835 ORTHO05D011094 8.2e-27 126.3 194 52.6
BolC9t55906H Brassica oleracea HOM05D008835 ORTHO05D011094 7.0e-26 123.2 198 43.4
BcaC04g21553 Brassica carinata HOM05D008835 ORTHO05D011094 7.7e-25 119.8 198 42.4
BraA09t37964Z Brassica rapa HOM05D008835 ORTHO05D011094 1.5e-23 115.5 198 42.4
A09p23600 Brassica napus HOM05D008835 ORTHO05D011094 9.4e-23 112.8 198 41.9
CsaV3_5G014350 Cucumis sativus L. HOM05D008835 ORTHO05D011094 2.1e-22 111.7 194 36.1
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 5.2e-21 107.1 193 47.2
ClCG07G005540 Citrullus lanatus HOM05D008835 ORTHO05D011094 4.4e-20 104.0 111 48.6
Cc11_g07320 Coffea canephora HOM05D008835 ORTHO05D011094 2.0e-17 95.1 112 47.3
ATR0753G127 Amborella trichopoda HOM05D008835 ORTHO05D011094 1.6e-14 85.5 92 47.8
Gohir.D01G139800 Gossypium hirsutum HOM05D008835 ORTHO05D011094 3.6e-14 84.3 189 38.6
Gorai.002G171900 Gossypium raimondii HOM05D008835 ORTHO05D011094 3.6e-14 84.3 189 38.6
Sed0018402 Sechium edule HOM05D008835 ORTHO05D011094 1.4e-13 82.4 194 36.1
RcHm_v2.0_Chr2g0123271 Rosa chinensis HOM05D008835 ORTHO05D011094 2.0e-12 78.6 81 49.4
Gohir.A01G146600 Gossypium hirsutum HOM05D008835 ORTHO05D011094 4.4e-12 77.4 184 38.0
Actinidia34037 Actinidia chinensis HOM05D008835 ORTHO05D011094 6.3e-11 73.6 51 66.7
Thecc.02G293200 Theobroma cacao HOM05D008835 ORTHO05D030527 4.5e-09 67.4 115 35.7
Nn5g29409 Nelumbo nucifera HOM05D007063 ORTHO05D008822 3.8e-08 64.3 82 36.6
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 1.9e-07 62.0 118 30.5
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 2.5e-07 61.6 116 32.8
CSS0013962 Camellia sinensis var. sinensis HOM05D008835 ORTHO05D111929 2.5e-07 61.6 46 97.8
Ah.10g033640 Amaranthus hybridus HOM05D007570 ORTHO05D009365 9.5e-07 59.7 127 31.5
Manes.05G012004 Manihot esculenta HOM05D003039 ORTHO05D009478 1.2e-06 59.3 121 28.1
Manes.04G149800 Manihot esculenta HOM05D003039 ORTHO05D009478 2.1e-06 58.5 115 29.6
Manes.10G117700 Manihot esculenta HOM05D003039 ORTHO05D009478 2.1e-06 58.5 115 29.6
Medtr1g086500 Medicago truncatula HOM05D003039 ORTHO05D009478 2.1e-06 58.5 120 27.5
CANSAT80G0566 Cannabis sativa HOM05D003039 ORTHO05D009478 2.8e-06 58.2 121 29.8
Thecc.01G320000 Theobroma cacao HOM05D003039 ORTHO05D009478 2.8e-06 58.2 118 30.5
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 3.6e-06 57.8 118 27.1
SGA_v2.0_scaffold7G04017 Striga asiatica HOM05D003039 ORTHO05D009478 3.6e-06 57.8 122 30.3
ATR0693G157 Amborella trichopoda HOM05D003039 ORTHO05D009478 6.1e-06 57.0 121 28.1
Nitab4.5_0001726g0080 Nicotiana tabacum HOM05D007063 ORTHO05D008822 8.0e-06 56.6 114 29.8
Psat6g159720 Pisum sativum HOM05D003039 ORTHO05D009478 8.0e-06 56.6 120 28.3


User provided reference genes

Program Settings