Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 1.0e-128 463.4 232 100.0
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 7.0e-101 370.9 216 85.2
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 6.5e-99 364.4 220 82.7
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 5.5e-98 361.3 218 80.7
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 8.0e-97 357.5 216 82.9
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 1.7e-94 349.7 227 75.3
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 8.3e-94 347.4 217 79.7
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.8e-93 346.3 211 82.9
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 5.4e-93 344.7 218 74.8
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 9.2e-93 344.0 216 77.8
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.6e-92 343.2 216 79.2
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 2.7e-92 342.4 218 76.6
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 7.8e-92 340.9 216 78.2
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.0e-91 340.5 216 78.2
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 2.9e-91 339.0 218 79.4
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 4.3e-90 335.1 221 75.1
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 5.6e-90 334.7 216 75.0
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 1.6e-89 333.2 220 76.4
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 2.1e-89 332.8 211 75.8
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 3.6e-89 332.0 213 77.5
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 6.1e-89 331.3 216 76.4
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 8.0e-89 330.9 216 75.5
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 1.8e-88 329.7 216 75.5
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 1.8e-88 329.7 216 77.8
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 3.0e-88 328.9 216 75.0
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 4.0e-88 328.6 216 75.0
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 6.8e-88 327.8 216 75.0
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 4.4e-87 325.1 221 71.9
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 5.7e-87 324.7 213 74.2
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.5e-87 324.3 216 73.6
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 2.9e-86 322.4 214 72.0
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 1.1e-85 320.5 222 71.2
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 1.1e-85 320.5 220 73.6
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 1.1e-85 320.5 218 72.5
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.4e-85 320.1 222 69.8
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 1.4e-85 320.1 221 71.5
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 1.8e-85 319.7 220 70.0
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.8e-85 319.7 216 73.1
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 2.4e-85 319.3 217 72.4
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.4e-85 319.3 218 71.6
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 7.0e-85 317.8 213 72.3
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 1.2e-84 317.0 218 71.1
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 1.2e-84 317.0 213 72.3
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 1.6e-84 316.6 216 70.8
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 2.0e-84 316.2 230 70.4
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 5.9e-84 314.7 221 69.7
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 1.3e-83 313.5 219 69.4
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 1.7e-83 313.2 217 71.4
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 1.7e-83 313.2 217 71.4
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 2.3e-83 312.8 216 71.3
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 3.9e-83 312.0 220 65.9
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 5.0e-83 311.6 209 73.7
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 6.6e-83 311.2 216 70.8
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 6.6e-83 311.2 216 71.3
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 1.1e-82 310.5 214 71.5
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 3.3e-82 308.9 209 74.6
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 4.3e-82 308.5 218 67.9
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 4.3e-82 308.5 218 67.9
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 5.6e-82 308.1 214 68.2
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 5.6e-82 308.1 218 67.9
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.2e-81 307.0 218 68.8
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 1.2e-81 307.0 228 67.5
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.8e-80 303.1 214 67.8
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 1.8e-80 303.1 204 74.5
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 4.0e-80 302.0 222 68.9
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 5.2e-80 301.6 228 68.0
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 6.8e-80 301.2 217 70.5
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 2.6e-79 299.3 217 70.0
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 2.6e-79 299.3 217 69.6
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.4e-79 298.5 203 71.4
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 5.8e-79 298.1 217 69.6
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 5.8e-79 298.1 223 69.1
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 7.5e-79 297.7 217 69.1
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 7.5e-79 297.7 217 69.1
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 9.8e-79 297.4 217 69.1
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 9.8e-79 297.4 217 69.1
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 9.8e-79 297.4 203 70.9
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 9.8e-79 297.4 224 66.5
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 9.8e-79 297.4 218 67.4
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 1.3e-78 297.0 215 68.8
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 1.3e-78 297.0 224 68.3
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.7e-78 296.6 218 68.3
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 1.7e-78 296.6 214 72.4
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 2.2e-78 296.2 218 68.8
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 2.2e-78 296.2 221 64.7
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 2.9e-78 295.8 208 70.2
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 3.7e-78 295.4 223 68.2
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 4.9e-78 295.0 273 57.5
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 4.1e-77 292.0 218 66.5
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 4.1e-77 292.0 211 67.3
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 9.2e-77 290.8 218 66.1
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 6.0e-76 288.1 211 66.4
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 6.0e-76 288.1 221 67.0
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 6.0e-76 288.1 228 65.4
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 2.5e-74 282.7 209 66.0
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 3.3e-74 282.3 211 66.8
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 9.5e-74 280.8 220 66.4
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 9.5e-74 280.8 201 65.2
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 6.8e-72 274.6 176 73.9
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 4.4e-71 271.9 201 64.7
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 9.9e-71 270.8 205 64.4
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 1.3e-70 270.4 201 70.1
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 2.4e-69 266.2 164 79.3
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 3.2e-69 265.8 177 75.7
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 4.1e-69 265.4 197 69.0
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 4.1e-69 265.4 215 63.7
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 5.4e-69 265.0 204 68.1
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 9.2e-69 264.2 213 66.2
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 6.0e-68 261.5 212 59.9
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 3.0e-67 259.2 215 61.4
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.5e-66 256.9 178 73.0
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 9.5e-66 254.2 178 71.9
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 3.6e-65 252.3 217 62.2
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 1.1e-64 250.8 156 78.2
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 3.1e-64 249.2 216 62.5
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 8.9e-64 247.7 164 73.8
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 5.8e-63 245.0 217 61.3
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 1.7e-62 243.4 150 80.7
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 4.9e-62 241.9 215 56.7
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.9e-61 240.0 215 55.8
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 3.2e-61 239.2 150 80.0
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 3.5e-60 235.7 168 65.5
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 1.3e-59 233.8 156 74.4
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 3.9e-59 232.3 205 62.4
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 1.9e-58 229.9 212 55.7
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 5.6e-58 228.4 209 55.5
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 5.6e-58 228.4 216 54.6
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 6.2e-57 224.9 222 50.0
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 9.9e-55 217.6 215 56.3
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 8.4e-54 214.5 221 53.4
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 9.3e-53 211.1 224 55.8
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 3.5e-52 209.1 205 52.2
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 3.5e-52 209.1 202 52.5
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.2e-45 185.7 126 77.8
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 7.1e-45 184.9 224 51.8
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 2.1e-44 183.3 222 43.7
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 2.3e-43 179.9 214 43.0
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 3.3e-42 176.0 161 49.7
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 7.4e-42 174.9 213 46.0
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.4e-40 170.6 216 46.3
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 5.3e-40 168.7 157 57.3
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 9.0e-40 167.9 311 34.4
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 3.8e-38 162.5 103 80.6
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 4.2e-37 159.1 95 78.9
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 3.0e-35 152.9 101 71.3
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.5e-34 150.6 209 41.1
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 7.4e-34 148.3 203 42.4
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 6.2e-33 145.2 203 41.4
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 1.3e-25 120.9 127 47.2
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.6e-25 120.6 175 43.4
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 2.8e-25 119.8 183 39.9
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 6.3e-25 118.6 83 65.1
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 1.2e-23 114.4 88 64.8
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 5.3e-16 89.0 207 35.7
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 1.2e-15 87.8 68 64.7
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 7.7e-15 85.1 85 50.6
Cfa019956 Carpinus fangiana HOM05D004548 ORTHO05D005402 4.1e-08 62.8 45 71.1
Cpa.g.sc38.60 Carica papaya HOM05D004548 ORTHO05D005402 2.9e-06 56.6 44 61.4
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 8.5e-06 55.1 43 58.1


User provided reference genes

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