Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047566 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 4.7e-114 414.5 198 100.0
CSS0030224 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 3.1e-89 332.0 161 98.8
CSS0023532 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D005846 2.7e-53 212.6 157 67.5
Actinidia21593 Actinidia chinensis HOM05D000462 ORTHO05D005846 4.6e-53 211.8 171 60.8
Dinv43525 Davidia involucrata HOM05D000462 ORTHO05D005846 2.2e-47 193.0 164 61.0
Rhsim07G0047200 Rhododendron simsii HOM05D000462 ORTHO05D005846 4.8e-42 175.3 139 59.0
Hma1.2p1_0353F.1_g133250 Hydrangea macrophylla HOM05D000462 ORTHO05D005846 2.4e-41 172.9 136 61.8
Rhsim07G0047100 Rhododendron simsii HOM05D000462 ORTHO05D005846 9.1e-41 171.0 139 61.9
TAR374G1078 Trochodendron aralioides HOM05D000462 ORTHO05D005846 7.7e-40 167.9 145 55.2
MD07G1080300 Malus domestica HOM05D000462 ORTHO05D005846 2.5e-38 162.9 136 55.9
Cfa010675 Carpinus fangiana HOM05D000462 ORTHO05D005846 3.2e-38 162.5 137 56.2
Prupe.2G100300 Prunus persica HOM05D000462 ORTHO05D005846 1.6e-37 160.2 134 56.7
Prupe.2G104700 Prunus persica HOM05D000462 ORTHO05D005846 1.6e-37 160.2 134 58.2
Prupe.2G104300 Prunus persica HOM05D000462 ORTHO05D005846 4.7e-37 158.7 134 58.2
Haze_03590 Corylus avellana HOM05D000462 ORTHO05D005846 3.0e-36 156.0 137 54.0
MD02G1233300 Malus domestica HOM05D000462 ORTHO05D005846 1.1e-35 154.1 134 54.5
Atru.chr2.1657 Acer truncatum HOM05D000462 ORTHO05D005846 2.6e-35 152.9 146 50.0
GSVIVG01019293001 Vitis vinifera HOM05D000462 ORTHO05D005846 1.3e-34 150.6 150 53.3
FAN03G2319 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.2e-34 149.8 169 42.6
RcHm_v2.0_Chr2g0147401 Rosa chinensis HOM05D000462 ORTHO05D005846 4.8e-34 148.7 135 48.9
FAN06G2574 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.8e-33 146.7 136 48.5
FAN10G1386 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.4e-33 146.4 130 50.0
Cc08_g05580 Coffea canephora HOM05D000462 ORTHO05D005846 3.1e-33 146.0 139 50.4
Nn1g09754 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.1e-33 146.0 129 52.7
Aqoxy3G02219 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 4.1e-33 145.6 149 51.0
FvH4_6g35581 Fragaria vesca HOM05D000462 ORTHO05D005846 5.3e-33 145.2 145 45.5
RcHm_v2.0_Chr2g0147411 Rosa chinensis HOM05D000462 ORTHO05D005846 5.3e-33 145.2 129 53.5
FvH4_7g07720 Fragaria vesca HOM05D000462 ORTHO05D005846 9.1e-33 144.4 130 49.2
MSTRG.17069 Avicennia marina HOM05D000462 ORTHO05D005846 1.6e-32 143.7 168 45.2
RcHm_v2.0_Chr1g0342371 Rosa chinensis HOM05D000462 ORTHO05D005846 4.5e-32 142.1 134 50.0
CiPaw.13G054400 Carya illinoinensis HOM05D000462 ORTHO05D005846 5.9e-32 141.7 136 50.0
FvH4_6g35582 Fragaria vesca HOM05D000462 ORTHO05D005846 7.7e-32 141.4 128 48.4
FAN14G2914 Fragaria x ananassa HOM05D000462 ORTHO05D005846 7.7e-32 141.4 128 48.4
MELO3C006216.2 Cucumis melo HOM05D000462 ORTHO05D005846 1.7e-31 140.2 136 52.2
RcHm_v2.0_Chr1g0342401 Rosa chinensis HOM05D000462 ORTHO05D005846 2.2e-31 139.8 135 48.1
Nn3g19412 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.8e-31 139.0 147 45.6
Nn3g19417 Nelumbo nucifera HOM05D000462 ORTHO05D005846 3.8e-31 139.0 147 45.6
Eucgr.E01753 Eucalyptus grandis HOM05D000462 ORTHO05D005846 8.5e-31 137.9 130 49.2
Peaxi162Scf00907g00221 Petunia axillaris HOM05D000462 ORTHO05D005846 8.5e-31 137.9 157 44.6
vmacro13593 Vaccinium macrocarpon HOM05D000462 ORTHO05D005846 1.5e-30 137.1 161 46.6
CsaV3_3G009950 Cucumis sativus L. HOM05D000462 ORTHO05D005846 2.5e-30 136.3 136 51.5
ClCG05G002510 Citrullus lanatus HOM05D000462 ORTHO05D005846 4.2e-30 135.6 136 50.7
PSO782G4146 Papaver somniferum HOM05D000462 ORTHO05D005846 5.5e-30 135.2 160 43.8
PGSC0003DMG400042622 Solanum tuberosum HOM05D000462 ORTHO05D005846 5.5e-30 135.2 141 48.2
PSO063G2746 Papaver somniferum HOM05D000462 ORTHO05D005846 7.2e-30 134.8 160 45.0
DCAR_029565 Daucus carota HOM05D000462 ORTHO05D005846 9.4e-30 134.4 144 49.3
Sed0002685 Sechium edule HOM05D000462 ORTHO05D005846 1.2e-29 134.0 140 47.9
DCAR_029566 Daucus carota HOM05D000462 ORTHO05D005846 2.7e-29 132.9 142 48.6
EL10Ac4g07923 Beta vulgaris HOM05D000462 ORTHO05D005846 6.1e-29 131.7 162 46.9
CAN.G992.17 Capsicum annuum HOM05D000462 ORTHO05D005846 1.4e-28 130.6 146 47.3
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.4e-28 130.6 160 46.2
Hund26858 Selenicereus undatus HOM05D000462 ORTHO05D005846 1.4e-28 130.6 140 50.7
Aqoxy7G00268 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 1.8e-28 130.2 166 40.4
Cc00_g12640 Coffea canephora HOM05D000462 ORTHO05D005846 1.8e-28 130.2 130 47.7
Lsat_1_v5_gn_7_33120 Lactuca sativa HOM05D000462 ORTHO05D005846 2.3e-28 129.8 145 43.4
DCAR_029563 Daucus carota HOM05D000462 ORTHO05D005846 3.0e-28 129.4 130 50.0
AUR62031622 Chenopodium quinoa HOM05D000462 ORTHO05D005846 4.0e-28 129.0 131 52.7
ECA240G2690 Erigeron canadensis HOM05D000462 ORTHO05D005846 4.0e-28 129.0 132 48.5
Peaxi162Scf00907g00226 Petunia axillaris HOM05D000462 ORTHO05D005846 4.0e-28 129.0 143 44.1
RcHm_v2.0_Chr1g0342491 Rosa chinensis HOM05D000462 ORTHO05D005846 4.0e-28 129.0 135 43.7
Lsat_1_v5_gn_5_59060 Lactuca sativa HOM05D000462 ORTHO05D005846 8.8e-28 127.9 134 45.5
PSO017G2480 Papaver somniferum HOM05D000462 ORTHO05D005846 8.8e-28 127.9 160 40.6
Sed0009318 Sechium edule HOM05D000462 ORTHO05D005846 8.8e-28 127.9 138 47.1
EL10Ac4g07924 Beta vulgaris HOM05D000462 ORTHO05D005846 1.1e-27 127.5 131 45.0
Aqoxy3G00515 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 2.6e-27 126.3 132 48.5
Nitab4.5_0003123g0040 Nicotiana tabacum HOM05D000462 ORTHO05D011162 5.7e-27 125.2 133 46.6
PSO478G1321 Papaver somniferum HOM05D000462 ORTHO05D005846 1.7e-26 123.6 160 40.0
Migut.N01672 Erythranthe guttata HOM05D000462 ORTHO05D005846 3.7e-26 122.5 140 45.7
Phvul.002G100800 Phaseolus vulgaris HOM05D000462 ORTHO05D005846 3.7e-26 122.5 142 41.5
ClCG05G011530 Citrullus lanatus HOM05D000462 ORTHO05D005846 8.2e-26 121.3 128 46.1
PGR042G2077 Punica granatum HOM05D000462 ORTHO05D005846 1.1e-25 120.9 125 45.6
VMungo0251G1006 Vigna mungo HOM05D000462 ORTHO05D005846 1.4e-25 120.6 142 43.0
Nitab4.5_0000792g0060 Nicotiana tabacum HOM05D000462 ORTHO05D005846 2.4e-25 119.8 135 47.4
Aqoxy2G03796 Aquilegia oxysepala HOM05D000462 ORTHO05D005846 4.1e-25 119.0 121 47.1
Lalb_Chr09g0328911 Lupinus albus HOM05D000462 ORTHO05D005846 7.0e-25 118.2 142 43.7
Cc08_g05560 Coffea canephora HOM05D000462 ORTHO05D005846 1.2e-24 117.5 139 44.6
Zm00001eb421100 Zea mays HOM05D000462 ORTHO05D005846 1.2e-24 117.5 160 36.9
Solyc01g081400.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 2.0e-24 116.7 140 45.0
Sopen01g032970 Solanum pennellii HOM05D000462 ORTHO05D005846 2.0e-24 116.7 140 45.0
PGSC0003DMG400001798 Solanum tuberosum HOM05D000462 ORTHO05D005846 3.5e-24 115.9 140 44.3
PGSC0003DMG400020979 Solanum tuberosum HOM05D000462 ORTHO05D005846 3.5e-24 115.9 140 44.3
HanXRQChr13g0411631 Helianthus annuus HOM05D000462 ORTHO05D005846 4.5e-24 115.5 139 40.3
Sopen01g026530 Solanum pennellii HOM05D000462 ORTHO05D005846 5.9e-24 115.2 137 43.1
Medtr4g083390 Medicago truncatula HOM05D000462 ORTHO05D005846 7.7e-24 114.8 127 44.1
Migut.N01673 Erythranthe guttata HOM05D000462 ORTHO05D005846 1.0e-23 114.4 137 42.3
ECA236G1772 Erigeron canadensis HOM05D000462 ORTHO05D005846 1.3e-23 114.0 136 45.6
Migut.N01674 Erythranthe guttata HOM05D000462 ORTHO05D005846 2.9e-23 112.8 141 41.8
Sc02g0004850 Simmondsia chinensis HOM05D000462 ORTHO05D005846 2.9e-23 112.8 109 50.5
Cc08_g05570 Coffea canephora HOM05D000462 ORTHO05D005846 3.8e-23 112.5 142 44.4
CAN.G206.135 Capsicum annuum HOM05D000462 ORTHO05D005846 8.5e-23 111.3 148 39.9
RcHm_v2.0_Chr1g0342511 Rosa chinensis HOM05D000462 ORTHO05D005846 1.1e-22 110.9 108 46.3
Peaxi162Scf00245g00411 Petunia axillaris HOM05D000462 ORTHO05D005846 1.5e-22 110.5 126 46.0
AUR62020518 Chenopodium quinoa HOM05D000462 ORTHO05D005846 2.5e-22 109.8 201 38.3
arahy.Tifrunner.gnm1.ann1.L6NMZX Arachis hypogaea HOM05D000462 ORTHO05D005846 7.2e-22 108.2 165 37.0
CANSAT78G2521 Cannabis sativa HOM05D000462 ORTHO05D005846 9.4e-22 107.8 141 44.7
arahy.Tifrunner.gnm1.ann1.ES60GW Arachis hypogaea HOM05D000462 ORTHO05D005846 1.2e-21 107.5 118 44.1
Solyc01g150140.1 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.2e-21 107.5 126 42.1
Os04g0386900 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.6e-21 107.1 129 41.1
arahy.Tifrunner.gnm1.ann1.AX2FME Arachis hypogaea HOM05D000462 ORTHO05D005846 3.6e-21 105.9 164 36.0
AUR62015684 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.6e-21 105.9 142 42.3
arahy.Tifrunner.gnm1.ann1.XCU387 Arachis hypogaea HOM05D000462 ORTHO05D005846 6.1e-21 105.1 118 44.1
Ciclev10033936m.g Citrus clementina HOM05D000462 ORTHO05D005846 1.4e-20 104.0 102 49.0
Psat7g132920 Pisum sativum HOM05D000462 ORTHO05D005846 1.8e-20 103.6 120 45.0
TPR.G34026 Trifolium pratense HOM05D000462 ORTHO05D005846 1.8e-20 103.6 111 44.1
AUR62031619 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.8e-20 101.7 177 36.7
SalBow4G1864 Salvia bowleyana HOM05D000462 ORTHO05D005846 6.8e-20 101.7 137 40.9
SalBow4G3150 Salvia bowleyana HOM05D000462 ORTHO05D005846 6.8e-20 101.7 137 40.9
FAN06G0093 Fragaria x ananassa HOM05D000462 ORTHO05D005846 1.5e-19 100.5 92 45.7
HPP92_014959 Vanilla planifolia HOM05D000462 ORTHO05D005846 3.4e-19 99.4 118 42.4
FAN14G3081 Fragaria x ananassa HOM05D000462 ORTHO05D005846 5.7e-19 98.6 100 42.0
HanXRQChr01g0021801 Helianthus annuus HOM05D000462 ORTHO05D005846 1.3e-18 97.4 104 44.2
unitig_750.g28427 Utricularia gibba HOM05D000462 ORTHO05D005846 6.3e-18 95.1 161 37.9
arahy.Tifrunner.gnm1.ann1.62DZ2D Arachis hypogaea HOM05D000462 ORTHO05D005846 4.1e-17 92.4 147 34.7
SalBow4G2124 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.2e-16 90.9 172 33.7
SalBow4G2827 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.6e-16 90.5 172 33.7
Solyc07g017470.3 Solanum lycopersicum HOM05D000462 ORTHO05D005846 1.6e-16 90.5 94 44.7
Ca_18787_v3 Cicer arietinum L. HOM05D000462 ORTHO05D005846 2.7e-16 89.7 108 45.4
Oeu013594.1 Olea europaea HOM05D000462 ORTHO05D005846 4.5e-16 89.0 126 37.3
unitig_749.g14241 Utricularia gibba HOM05D000462 ORTHO05D005846 4.5e-16 89.0 108 38.9
Nitab4.5_0000050g0130 Nicotiana tabacum HOM05D000462 ORTHO05D005846 5.9e-16 88.6 131 36.6
Oeu039097.1 Olea europaea HOM05D000462 ORTHO05D005846 5.9e-16 88.6 132 37.1
Glyma.07G224100 Glycine max HOM05D000462 ORTHO05D005846 7.7e-16 88.2 75 49.3
SalBow4G0706 Salvia bowleyana HOM05D009568 ORTHO05D011026 2.2e-15 86.7 113 41.6
unitig_26.g8840 Utricularia gibba HOM05D000462 ORTHO05D005846 2.2e-15 86.7 132 34.1
SalBow4G0191 Salvia bowleyana HOM05D009568 ORTHO05D011026 2.9e-15 86.3 113 41.6
Cpa.g.sc73.65 Carica papaya HOM05D000462 ORTHO05D005846 3.8e-15 85.9 93 43.0
AUR62015689 Chenopodium quinoa HOM05D000462 ORTHO05D005846 3.8e-15 85.9 105 39.0
Os06g0112300 Oryza sativa ssp. japonica HOM05D000462 ORTHO05D005846 1.1e-14 84.3 125 39.2
AUR62031621 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.4e-14 81.3 103 41.7
Nitab4.5_0006461g0020 Nicotiana tabacum HOM05D000462 ORTHO05D005846 1.2e-13 80.9 91 48.4
CAN.G992.16 Capsicum annuum HOM05D000462 ORTHO05D005846 2.1e-13 80.1 95 46.3
CDE03G0429 Ceratophyllum demersum HOM05D000462 ORTHO05D005846 2.3e-12 76.6 122 31.1
FAN10G1699 Fragaria x ananassa HOM05D000462 ORTHO05D005846 2.6e-11 73.2 77 42.9
FvH4_7g07710 Fragaria vesca HOM05D000462 ORTHO05D005846 8.3e-10 68.2 117 34.2
Cpa.g.c42681 Carica papaya HOM05D000462 ORTHO05D005846 1.1e-09 67.8 75 41.3
TPR.G34039 Trifolium pratense HOM05D000462 ORTHO05D005846 1.8e-09 67.0 105 31.4
Peaxi162Scf00104g00047 Petunia axillaris HOM05D000462 ORTHO05D005846 2.7e-08 63.2 90 35.6
SGA_v2.0_scaffold98G29378 Striga asiatica HOM05D000462 ORTHO05D005846 1.0e-07 61.2 114 31.6
SalBow6G3582 Salvia bowleyana HOM05D000462 ORTHO05D005846 1.3e-07 60.8 115 29.6
PSO063G3506 Papaver somniferum HOM05D000823 ORTHO05D000088 1.7e-07 60.5 122 30.3
PSO170G5993 Papaver somniferum HOM05D000823 ORTHO05D000088 1.7e-07 60.5 129 31.0
Nitab4.5_0000188g0320 Nicotiana tabacum HOM05D000395 ORTHO05D022207 5.0e-07 58.9 147 27.2
SGA_v2.0_scaffold15G07218 Striga asiatica HOM05D000395 ORTHO05D000088 5.0e-07 58.9 85 32.9
Aqoxy5G02385 Aquilegia oxysepala HOM05D024176 ORTHO05D005846 6.6e-07 58.5 122 29.5
Duzib264G0510 Durio zibethinus HOM05D000395 ORTHO05D000088 6.6e-07 58.5 119 31.9
AUR62020516 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.1e-06 57.8 69 43.5
SGA_v2.0_scaffold4G02224 Striga asiatica HOM05D000462 ORTHO05D005846 1.1e-06 57.8 58 50.0
DCAR_003838 Daucus carota HOM05D000395 ORTHO05D000088 1.5e-06 57.4 109 32.1
PSO017G0811 Papaver somniferum HOM05D000823 ORTHO05D000088 1.9e-06 57.0 128 30.5
Nitab4.5_0006031g0060 Nicotiana tabacum HOM05D010896 ORTHO05D011162 2.5e-06 56.6 81 37.0
Eucgr.I01210 Eucalyptus grandis HOM05D000395 ORTHO05D000088 3.3e-06 56.2 127 30.7
PSO017G5313 Papaver somniferum HOM05D000823 ORTHO05D000088 3.3e-06 56.2 122 28.7
Nitab4.5_0002937g0010 Nicotiana tabacum HOM05D010896 ORTHO05D011162 7.3e-06 55.1 105 33.3
SGA_v2.0_scaffold15G07217 Striga asiatica HOM05D000395 ORTHO05D000088 7.3e-06 55.1 85 30.6
Lj2C600G8 Lonicera japonica HOM05D000395 ORTHO05D000088 9.5e-06 54.7 102 32.4
TWI09G0341 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 9.5e-06 54.7 105 34.3


User provided reference genes

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