Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047544 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 7.0e-162 573.9 299 100.0
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 1.2e-137 493.4 275 92.7
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 2.7e-137 492.3 275 92.0
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 4.6e-137 491.5 275 92.7
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 4.6e-137 491.5 299 88.3
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 7.8e-137 490.7 275 92.7
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 7.8e-137 490.7 275 92.4
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 1.3e-136 490.0 275 91.6
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 3.0e-136 488.8 275 92.4
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 1.9e-135 486.1 275 91.6
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 3.3e-135 485.3 275 90.9
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 3.3e-135 485.3 275 91.3
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 4.3e-135 485.0 275 90.9
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 4.3e-135 485.0 275 90.9
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 5.6e-135 484.6 275 90.9
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 7.3e-135 484.2 275 90.5
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 7.3e-135 484.2 275 91.3
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 7.3e-135 484.2 275 91.3
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 9.5e-135 483.8 275 91.3
Cpa.g.sc19.46 Carica papaya HOM05D003369 ORTHO05D004089 9.5e-135 483.8 275 90.9
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 9.5e-135 483.8 275 90.5
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 9.5e-135 483.8 275 90.5
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 9.5e-135 483.8 275 91.3
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 2.1e-134 482.6 275 91.6
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 2.1e-134 482.6 275 91.3
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 2.8e-134 482.3 275 90.2
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 2.8e-134 482.3 275 90.9
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 8.1e-134 480.7 275 90.5
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 8.1e-134 480.7 275 91.3
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 8.1e-134 480.7 275 90.2
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 1.1e-133 480.3 275 90.2
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 1.4e-133 479.9 275 89.8
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 1.8e-133 479.6 275 89.8
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 2.4e-133 479.2 275 90.5
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 3.1e-133 478.8 275 90.2
Psat4g220880 Pisum sativum HOM05D003369 ORTHO05D004089 4.0e-133 478.4 275 89.8
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 4.0e-133 478.4 275 89.5
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 5.2e-133 478.0 275 89.8
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 8.9e-133 477.2 275 89.8
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 8.9e-133 477.2 275 89.8
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 8.9e-133 477.2 275 88.4
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 1.2e-132 476.9 292 84.9
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 2.0e-132 476.1 275 88.7
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 3.4e-132 475.3 275 89.5
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 4.4e-132 474.9 275 89.5
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 5.8e-132 474.6 275 89.1
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 5.8e-132 474.6 275 90.2
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 7.6e-132 474.2 275 88.0
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 7.6e-132 474.2 275 88.0
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 9.9e-132 473.8 275 88.4
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 9.9e-132 473.8 275 89.1
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 9.9e-132 473.8 275 89.1
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 1.3e-131 473.4 275 87.3
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 1.3e-131 473.4 275 89.5
VMungo0720G1409 Vigna mungo HOM05D003369 ORTHO05D004089 1.7e-131 473.0 286 85.3
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 2.2e-131 472.6 275 88.0
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 2.9e-131 472.2 275 88.7
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 4.9e-131 471.5 275 88.4
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 4.9e-131 471.5 275 88.0
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 4.9e-131 471.5 276 88.0
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 4.9e-131 471.5 275 89.1
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 4.9e-131 471.5 275 89.5
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 6.4e-131 471.1 275 87.3
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 6.4e-131 471.1 274 89.4
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 6.4e-131 471.1 275 88.4
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 8.4e-131 470.7 275 87.3
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 8.4e-131 470.7 275 88.4
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 8.4e-131 470.7 275 86.5
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 1.4e-130 469.9 275 86.9
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 1.4e-130 469.9 275 86.9
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 1.9e-130 469.5 275 86.9
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 1.9e-130 469.5 275 88.0
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 1.9e-130 469.5 275 88.0
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 2.4e-130 469.2 275 86.9
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 2.4e-130 469.2 275 86.9
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 2.4e-130 469.2 275 86.9
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 3.2e-130 468.8 266 92.1
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 3.2e-130 468.8 275 88.7
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 3.2e-130 468.8 275 88.7
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 4.1e-130 468.4 275 86.5
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 4.1e-130 468.4 275 86.5
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 4.1e-130 468.4 284 86.6
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 5.4e-130 468.0 275 87.3
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 5.4e-130 468.0 275 87.3
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 9.2e-130 467.2 275 88.4
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 9.2e-130 467.2 275 88.4
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 1.6e-129 466.5 275 87.3
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 2.1e-129 466.1 275 86.5
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 2.1e-129 466.1 275 86.5
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 2.1e-129 466.1 275 86.9
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 3.5e-129 465.3 275 86.9
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 3.5e-129 465.3 272 90.4
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 3.5e-129 465.3 275 88.0
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 3.5e-129 465.3 285 83.5
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 6.0e-129 464.5 276 86.6
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 6.0e-129 464.5 276 86.6
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 7.8e-129 464.2 275 86.2
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 1.0e-128 463.8 276 86.2
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 1.0e-128 463.8 276 86.2
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 1.0e-128 463.8 276 86.2
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 1.0e-128 463.8 276 86.2
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 1.3e-128 463.4 275 86.5
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 1.7e-128 463.0 279 87.1
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 2.3e-128 462.6 276 86.2
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 2.3e-128 462.6 275 85.8
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 3.0e-128 462.2 312 80.1
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 8.7e-128 460.7 275 87.6
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 1.9e-127 459.5 275 85.5
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 5.6e-127 458.0 266 90.2
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 1.2e-126 456.8 275 86.5
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 2.8e-126 455.7 275 84.4
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 9.9e-124 447.2 275 85.5
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 3.2e-122 442.2 273 86.4
Zm00001eb368920 Zea mays HOM05D003369 ORTHO05D004089 5.4e-122 441.4 275 81.5
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 1.6e-121 439.9 272 84.2
SHI28914 Sapria himalayana HOM05D003369 ORTHO05D004089 4.6e-121 438.3 280 81.4
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 3.9e-120 435.3 275 83.3
Mapoly0025s0051 Marchantia polymorpha HOM05D003369 ORTHO05D004089 1.5e-119 433.3 275 79.6
Haze_05901 Corylus avellana HOM05D003369 ORTHO05D004089 2.5e-119 432.6 392 63.5
DCAR_005879 Daucus carota HOM05D003369 ORTHO05D004089 1.3e-118 430.3 249 90.0
Nitab4.5_0003473g0020 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.1e-117 427.2 249 89.6
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.4e-117 426.8 313 76.0
Pp3c3_22310 Physcomitrium patens HOM05D003369 ORTHO05D004089 1.4e-117 426.8 275 78.2
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 1.2e-116 423.7 249 88.8
Lj8C53G16 Lonicera japonica HOM05D003369 ORTHO05D004089 1.5e-116 423.3 275 81.8
Lalb_Chr02g0149401 Lupinus albus HOM05D003369 ORTHO05D004089 8.4e-115 417.5 249 86.7
Psat3g198120 Pisum sativum HOM05D003369 ORTHO05D004089 4.6e-113 411.8 249 86.7
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 7.4e-111 404.4 275 79.3
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 1.6e-110 403.3 275 78.9
AagrBONN_evm.TU.Sc2ySwM_117.1623 Anthoceros agrestis HOM05D003369 ORTHO05D004089 4.8e-110 401.7 275 74.5
unitig_88.g27820 Utricularia gibba HOM05D003369 ORTHO05D004089 2.0e-108 396.4 286 77.6
CBR_g49707 Chara braunii HOM05D003369 ORTHO05D004089 7.6e-100 367.9 275 68.0
MSTRG.18905 Avicennia marina HOM05D003369 ORTHO05D004089 6.7e-96 354.8 209 88.0
SEGI_10704 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 1.6e-94 350.1 209 86.1
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 1.7e-91 340.1 292 66.4
SMO199G0006 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 2.2e-91 339.7 246 72.0
SMO361G0532 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 1.6e-81 307.0 207 74.4
Cre13.g575300 Chlamydomonas reinhardtii HOM05D003369 ORTHO05D004089 1.3e-75 287.3 275 53.5
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 1.2e-73 280.8 333 52.0
Psat0s4462g0200 Pisum sativum HOM05D003369 ORTHO05D004089 1.6e-73 280.4 275 59.3
PRCOL_00000010 Prasinoderma coloniale HOM05D003369 ORTHO05D004089 6.1e-73 278.5 276 53.3
MCO06G273 Micromonas commoda HOM05D003369 ORTHO05D004089 3.3e-71 272.7 280 53.2
CBR_g756 Chara braunii HOM05D000486 ORTHO05D004089 8.2e-70 268.1 201 67.2
Psat0s4462g0120 Pisum sativum HOM05D003369 ORTHO05D004089 2.5e-66 256.5 202 68.8
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 8.0e-65 251.5 213 64.8
TPR.G12602 Trifolium pratense HOM05D003369 ORTHO05D004089 9.8e-55 218.0 146 80.8
C04p02180 Brassica napus HOM05D003369 ORTHO05D004089 3.3e-42 176.4 101 85.1
QL09p045246 Quercus lobata HOM05D003369 ORTHO05D004089 2.4e-37 160.2 150 63.3
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 3.5e-36 156.4 177 54.2
C04p02200 Brassica napus HOM05D003369 ORTHO05D004089 7.8e-36 155.2 101 78.2
QL03p033225 Quercus lobata HOM05D000026 ORTHO05D000127 5.6e-26 122.5 117 63.2
QL08p059957 Quercus lobata HOM05D000062 ORTHO05D000043 5.6e-26 122.5 75 85.3
QL07p007378 Quercus lobata HOM05D003369 ORTHO05D004089 1.1e-24 118.2 76 80.3
QL12p002321 Quercus lobata HOM05D003369 ORTHO05D006179 1.0e-19 101.7 81 70.4
SMO361G0312 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 1.0e-19 101.7 150 46.0
QL05p076317 Quercus lobata HOM05D003369 ORTHO05D004089 4.3e-18 96.3 61 85.2
SEGI_31777 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 3.6e-17 93.2 55 83.6
Sabra12G0046600 Salix brachista HOM05D003369 ORTHO05D004089 4.7e-17 92.8 160 43.8
QL10p029382 Quercus lobata HOM05D003369 ORTHO05D004089 9.9e-15 85.1 55 81.8
Mapoly0025s0052 Marchantia polymorpha HOM05D003369 ORTHO05D004089 1.9e-13 80.9 91 48.4
Migut.C01386 Erythranthe guttata HOM05D003679 ORTHO05D004265 6.0e-12 75.9 235 23.4
MSTRG.25498 Avicennia marina HOM05D003679 ORTHO05D004265 3.0e-11 73.6 227 23.8
CAN.G43.11 Capsicum annuum HOM05D003679 ORTHO05D004265 3.9e-11 73.2 227 23.3
SalBow7G3862 Salvia bowleyana HOM05D003679 ORTHO05D004265 6.6e-11 72.4 227 24.2
AUR62013388 Chenopodium quinoa HOM05D003679 ORTHO05D004265 1.1e-10 71.6 235 22.6
Prupe.8G006100 Prunus persica HOM05D003679 ORTHO05D004265 1.5e-10 71.2 227 23.3
ClCG08G000780 Citrullus lanatus HOM05D003679 ORTHO05D004265 7.3e-10 68.9 227 22.5
Medtr4g030910 Medicago truncatula HOM05D003679 ORTHO05D004265 1.3e-09 68.2 228 24.1
Os01g0616100 Oryza sativa ssp. japonica HOM05D003679 ORTHO05D004265 1.3e-09 68.2 227 24.2
TPR.G34140 Trifolium pratense HOM05D003679 ORTHO05D004265 3.6e-09 66.6 228 23.2
Psat0s2790g0080 Pisum sativum HOM05D003679 ORTHO05D004265 2.4e-08 63.9 228 22.4
PGR004G0725 Punica granatum HOM05D003679 ORTHO05D004265 1.5e-07 61.2 228 21.9
CARHR023220 Cardamine hirsuta HOM05D003679 ORTHO05D004265 2.9e-06 57.0 227 19.8
unitig_37.g13075 Utricularia gibba HOM05D003679 ORTHO05D004265 8.4e-06 55.5 245 20.4


User provided reference genes

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