Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047540 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D007423 7.9e-64 246.9 121 100.0
CSS0023899 Camellia sinensis var. sinensis HOM05D000121 ORTHO05D007423 3.1e-60 235.0 129 92.2
Actinidia00678 Actinidia chinensis HOM05D000121 ORTHO05D007423 3.7e-37 158.3 83 88.0
Actinidia11263 Actinidia chinensis HOM05D000121 ORTHO05D007423 2.3e-34 149.1 81 82.7
Rhsim08G0205400 Rhododendron simsii HOM05D000121 ORTHO05D007423 1.9e-33 146.0 83 81.9
vmacro19059 Vaccinium macrocarpon HOM05D000121 ORTHO05D007423 5.6e-33 144.4 83 79.5
Dinv21413 Davidia involucrata HOM05D000121 ORTHO05D007423 2.6e-30 135.6 83 77.1
EL10Ac9g22203 Beta vulgaris HOM05D000121 ORTHO05D007423 2.1e-24 115.9 79 67.1
CiPaw.01G254800 Carya illinoinensis HOM05D000121 ORTHO05D007423 2.8e-24 115.5 78 74.4
AUR62027001 Chenopodium quinoa HOM05D000121 ORTHO05D007423 2.8e-24 115.5 79 65.8
Lj9C493G4 Lonicera japonica HOM05D000121 ORTHO05D007423 2.8e-24 115.5 81 67.9
Haze_16670 Corylus avellana HOM05D000121 ORTHO05D007423 6.2e-24 114.4 78 71.8
Migut.I00691 Erythranthe guttata HOM05D000121 ORTHO05D007423 1.4e-23 113.2 79 64.6
QL05p035924 Quercus lobata HOM05D000121 ORTHO05D007423 2.3e-23 112.5 78 69.2
SalBow7G3127 Salvia bowleyana HOM05D000121 ORTHO05D007423 5.2e-23 111.3 78 66.7
TAR625G0397 Trochodendron aralioides HOM05D000121 ORTHO05D007423 6.8e-23 110.9 81 63.0
Actinidia17457 Actinidia chinensis HOM05D004408 ORTHO05D005486 8.9e-23 110.5 71 73.2
Cfa001878 Carpinus fangiana HOM05D000121 ORTHO05D007423 1.2e-22 110.2 78 69.2
Duzib235G1084 Durio zibethinus HOM05D000121 ORTHO05D007423 1.2e-22 110.2 81 64.2
Sc12g0008290 Simmondsia chinensis HOM05D000121 ORTHO05D007423 1.2e-22 110.2 79 62.0
Lsat_1_v5_gn_1_31080 Lactuca sativa HOM05D000121 ORTHO05D007423 2.6e-22 109.0 78 65.4
Thecc.06G042000 Theobroma cacao HOM05D000121 ORTHO05D007423 2.6e-22 109.0 80 66.2
Nn8g39907 Nelumbo nucifera HOM05D000121 ORTHO05D007423 5.8e-22 107.8 81 60.5
MBI15_g18249_MAGBIO Magnolia biondii HOM05D000121 ORTHO05D007423 9.8e-22 107.1 81 59.3
Prupe.3G098500 Prunus persica HOM05D000121 ORTHO05D007423 9.8e-22 107.1 76 69.7
Ah.01g024650 Amaranthus hybridus HOM05D000121 ORTHO05D007423 1.7e-21 106.3 79 63.3
HanXRQChr04g0099601 Helianthus annuus HOM05D000121 ORTHO05D007423 2.2e-21 105.9 78 65.4
COL.COLO4_26706 Corchorus olitorius HOM05D000121 ORTHO05D007423 4.9e-21 104.8 78 65.4
Lalb_Chr22g0349431 Lupinus albus HOM05D000121 ORTHO05D007423 4.9e-21 104.8 78 64.1
AUR62030841 Chenopodium quinoa HOM05D000121 ORTHO05D007423 8.3e-21 104.0 76 64.5
CANSAT56G2614 Cannabis sativa HOM05D000121 ORTHO05D007423 1.1e-20 103.6 78 66.7
Oeu009804.1 Olea europaea HOM05D000121 ORTHO05D007423 2.4e-20 102.4 75 64.0
RcHm_v2.0_Chr2g0132931 Rosa chinensis HOM05D000121 ORTHO05D007423 4.1e-20 101.7 78 62.8
GSVIVG01015962001 Vitis vinifera HOM05D000121 ORTHO05D007423 4.1e-20 101.7 66 72.7
ClCG10G012900 Citrullus lanatus HOM05D000121 ORTHO05D007423 5.4e-20 101.3 78 61.5
Peaxi162Scf00553g00540 Petunia axillaris HOM05D000121 ORTHO05D007423 5.4e-20 101.3 78 61.5
Lj3g0008200 Lotus japonicus HOM05D000121 ORTHO05D007423 1.2e-19 100.1 79 60.8
Phvul.005G175600 Phaseolus vulgaris HOM05D000121 ORTHO05D007423 1.2e-19 100.1 78 60.3
Solyc03g117540.4 Solanum lycopersicum HOM05D000121 ORTHO05D007423 1.6e-19 99.8 78 57.7
Glyma.13G370300 Glycine max HOM05D000121 ORTHO05D007423 2.0e-19 99.4 78 62.8
VMungo1080G0885 Vigna mungo HOM05D000121 ORTHO05D007423 2.0e-19 99.4 82 58.5
Gohir.D05G119900 Gossypium hirsutum HOM05D000121 ORTHO05D007423 2.7e-19 99.0 80 61.2
Gorai.009G123500 Gossypium raimondii HOM05D000121 ORTHO05D007423 2.7e-19 99.0 80 61.2
CsaV3_3G032770 Cucumis sativus L. HOM05D000121 ORTHO05D007423 3.5e-19 98.6 78 60.3
Thhalv10024220m.g Eutrema salsugineum HOM05D000121 ORTHO05D007423 3.5e-19 98.6 78 59.0
Atru.chr10.2415_Atru.chr10.2416 Acer truncatum HOM05D000121 ORTHO05D007423 4.6e-19 98.2 78 64.1
Ciclev10024806m.g Citrus clementina HOM05D000121 ORTHO05D007423 4.6e-19 98.2 75 64.0
MELO3C026737.2 Cucumis melo HOM05D000121 ORTHO05D007423 4.6e-19 98.2 78 59.0
CAN.G407.8 Capsicum annuum HOM05D000121 ORTHO05D007423 6.0e-19 97.8 78 60.3
Sed0004285 Sechium edule HOM05D000121 ORTHO05D007423 6.0e-19 97.8 107 50.5
Gohir.A05G119000 Gossypium hirsutum HOM05D000121 ORTHO05D007423 7.8e-19 97.4 80 60.0
ECA247G2933 Erigeron canadensis HOM05D000121 ORTHO05D007423 1.0e-18 97.1 78 59.0
MSTRG.11184 Avicennia marina HOM05D000121 ORTHO05D007423 1.3e-18 96.7 79 59.5
A03p51040 Brassica napus HOM05D000121 ORTHO05D007423 1.3e-18 96.7 78 59.0
BraA03t14190Z Brassica rapa HOM05D000121 ORTHO05D007423 1.3e-18 96.7 78 59.0
CARHR104110 Cardamine hirsuta HOM05D000121 ORTHO05D007423 1.3e-18 96.7 81 54.3
MD09G1225000 Malus domestica HOM05D000121 ORTHO05D007423 1.3e-18 96.7 80 58.8
Manes.11G066800 Manihot esculenta HOM05D000121 ORTHO05D007423 1.7e-18 96.3 78 61.5
PGR102G2529 Punica granatum HOM05D000121 ORTHO05D007423 1.7e-18 96.3 78 59.0
Sopen03g036450 Solanum pennellii HOM05D000121 ORTHO05D007423 1.7e-18 96.3 78 56.4
BolC7t45452H Brassica oleracea HOM05D000121 ORTHO05D007423 2.3e-18 95.9 88 51.1
FAN05G1320 Fragaria x ananassa HOM05D000121 ORTHO05D007423 3.0e-18 95.5 82 58.5
TWI18G1091 Tripterygium wilfordii HOM05D000121 ORTHO05D007423 3.0e-18 95.5 81 55.6
C07p49470 Brassica napus HOM05D000121 ORTHO05D007423 3.9e-18 95.1 88 51.1
arahy.Tifrunner.gnm1.ann1.AY4NJ9 Arachis hypogaea HOM05D000121 ORTHO05D007423 6.6e-18 94.4 79 57.0
ATR0739G176 Amborella trichopoda HOM05D000121 ORTHO05D007423 8.6e-18 94.0 78 55.1
FvH4_6g28590 Fragaria vesca HOM05D000121 ORTHO05D007423 8.6e-18 94.0 82 57.3
FAN14G1613 Fragaria x ananassa HOM05D000121 ORTHO05D007423 8.6e-18 94.0 82 57.3
DCAR_003926 Daucus carota HOM05D000121 ORTHO05D007423 1.5e-17 93.2 79 57.0
arahy.Tifrunner.gnm1.ann1.5LV02X Arachis hypogaea HOM05D000121 ORTHO05D007423 1.9e-17 92.8 79 55.7
Ca_01014_v3 Cicer arietinum L. HOM05D000121 ORTHO05D007423 1.9e-17 92.8 78 59.0
Cc04_g05140 Coffea canephora HOM05D000121 ORTHO05D007423 1.9e-17 92.8 78 53.8
Sabra03G0133400 Salix brachista HOM05D000121 ORTHO05D007423 3.3e-17 92.0 83 55.4
PSO384G0944 Papaver somniferum HOM05D000121 ORTHO05D007423 4.3e-17 91.7 90 47.8
Sp7g16030 Schrenkiella parvula HOM05D000121 ORTHO05D007423 4.3e-17 91.7 78 56.4
Aa31sc61G130 Aethionema arabicum HOM05D000121 ORTHO05D007423 5.6e-17 91.3 78 56.4
Potri.003G182601 Populus trichocarpa HOM05D000121 ORTHO05D007423 5.6e-17 91.3 78 57.7
Aqoxy7G02250 Aquilegia oxysepala HOM05D000121 ORTHO05D007423 1.2e-16 90.1 78 53.8
Aqoxy7G02252 Aquilegia oxysepala HOM05D000121 ORTHO05D007423 1.2e-16 90.1 78 53.8
AL3G44200 Arabidopsis lyrata HOM05D000121 ORTHO05D007423 2.8e-16 89.0 78 53.8
Psat5g098320 Pisum sativum HOM05D000121 ORTHO05D007423 2.8e-16 89.0 78 56.4
Medtr2g105190 Medicago truncatula HOM05D000121 ORTHO05D007423 4.7e-16 88.2 78 55.1
AT2G07680 Arabidopsis thaliana HOM05D000121 ORTHO05D007423 1.1e-15 87.0 78 51.3
Zm00001eb374580 Zea mays HOM05D000121 ORTHO05D007423 1.1e-15 87.0 81 48.1
Eucgr.F03961 Eucalyptus grandis HOM05D000121 ORTHO05D007423 5.2e-15 84.7 66 62.1
TPR.G19154 Trifolium pratense HOM05D000121 ORTHO05D007423 5.2e-15 84.7 75 58.7
Os06g0184700 Oryza sativa ssp. japonica HOM05D000121 ORTHO05D007423 2.0e-14 82.8 79 48.1
HPP92_015868 Vanilla planifolia HOM05D000121 ORTHO05D007423 2.6e-14 82.4 78 48.7
CDE02G3275 Ceratophyllum demersum HOM05D000121 ORTHO05D007423 4.6e-11 71.6 77 50.6
AagrBONN_evm.TU.Sc2ySwM_369.271 Anthoceros agrestis HOM05D000121 ORTHO05D007423 1.0e-10 70.5 78 41.0
Carub.0013s0012 Capsella rubella HOM05D000121 ORTHO05D018186 2.5e-09 65.9 63 49.2
Pp3c22_9930 Physcomitrium patens HOM05D000121 ORTHO05D007423 4.7e-08 61.6 78 39.7


User provided reference genes

Program Settings