Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047531 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D112748 2.8e-53 211.8 119 100.0
Actinidia23428 Actinidia chinensis HOM05D003864 ORTHO05D004658 2.2e-18 95.9 103 55.3
Lj6A670T81 Lonicera japonica HOM05D003864 ORTHO05D004658 5.5e-17 91.3 84 60.7
Rhsim02G0013600 Rhododendron simsii HOM05D003864 ORTHO05D004658 9.4e-17 90.5 100 51.0
Dinv38324 Davidia involucrata HOM05D003864 ORTHO05D004658 1.6e-16 89.7 115 57.4
Rhsim04G0216400 Rhododendron simsii HOM05D003864 ORTHO05D004658 3.0e-15 85.5 102 65.7
Haze_01063 Corylus avellana HOM05D003864 ORTHO05D004658 1.1e-14 83.6 84 59.5
Potri.008G204700 Populus trichocarpa HOM05D003864 ORTHO05D004658 3.3e-14 82.0 83 55.4
vmacro15256 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 3.3e-14 82.0 105 48.6
Dinv44425 Davidia involucrata HOM05D003864 ORTHO05D004658 7.4e-14 80.9 51 78.4
GSVIVG01017804001 Vitis vinifera HOM05D003864 ORTHO05D004658 7.4e-14 80.9 117 47.9
Cfa015492 Carpinus fangiana HOM05D003864 ORTHO05D004658 1.3e-13 80.1 115 49.6
TAR362G0395 Trochodendron aralioides HOM05D003864 ORTHO05D004658 4.8e-13 78.2 98 46.9
Sabra08G0157300 Salix brachista HOM05D003864 ORTHO05D004658 1.1e-12 77.0 83 53.0
TAR633G1069 Trochodendron aralioides HOM05D003864 ORTHO05D004658 3.1e-12 75.5 51 66.7
Nitab4.5_0001054g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 4.1e-12 75.1 54 68.5
MELO3C021355.2 Cucumis melo HOM05D003864 ORTHO05D004658 6.9e-12 74.3 51 70.6
COL.COLO4_13927 Corchorus olitorius HOM05D003864 ORTHO05D004658 1.2e-11 73.6 52 73.1
Manes.15G016900 Manihot esculenta HOM05D003864 ORTHO05D004658 1.2e-11 73.6 50 68.0
Nn3g21324 Nelumbo nucifera HOM05D003864 ORTHO05D004658 1.2e-11 73.6 95 45.3
vmacro08202 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 1.5e-11 73.2 45 75.6
CsaV3_6G017400 Cucumis sativus L. HOM05D003864 ORTHO05D004658 2.0e-11 72.8 51 68.6
TWI53G0015 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.0e-11 72.8 102 45.1
TWI53G1008 Tripterygium wilfordii HOM05D003864 ORTHO05D004658 2.0e-11 72.8 102 45.1
Manes.03G191300 Manihot esculenta HOM05D003864 ORTHO05D004658 2.6e-11 72.4 51 66.7
Nn4g25986 Nelumbo nucifera HOM05D003864 ORTHO05D004658 3.4e-11 72.0 51 64.7
Nitab4.5_0001459g0140 Nicotiana tabacum HOM05D003864 ORTHO05D004658 3.4e-11 72.0 98 42.9
Prupe.1G142000 Prunus persica HOM05D003864 ORTHO05D004658 5.9e-11 71.2 57 64.9
Solyc06g054530.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 7.7e-11 70.9 52 67.3
Cpa.g.sc1008.4 Carica papaya HOM05D003864 ORTHO05D004658 1.0e-10 70.5 57 64.9
Sed0015457 Sechium edule HOM05D003864 ORTHO05D004658 1.0e-10 70.5 51 68.6
PGSC0003DMG400030786 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.0e-10 70.5 52 65.4
CAN.G256.9 Capsicum annuum HOM05D003864 ORTHO05D004658 1.7e-10 69.7 54 61.1
MBI19_g26585_MAGBIO Magnolia biondii HOM05D003864 ORTHO05D004658 1.7e-10 69.7 106 44.3
Nitab4.5_0004537g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.7e-10 69.7 53 60.4
Sopen06g019600 Solanum pennellii HOM05D003864 ORTHO05D004658 1.7e-10 69.7 55 67.3
ClCG06G005360 Citrullus lanatus HOM05D003864 ORTHO05D004658 2.2e-10 69.3 53 64.2
MSTRG.10054 Avicennia marina HOM05D003864 ORTHO05D004658 2.9e-10 68.9 47 68.1
Thhalv10016876m.g Eutrema salsugineum HOM05D003864 ORTHO05D004658 2.9e-10 68.9 56 62.5
CiPaw.01G152900 Carya illinoinensis HOM05D003864 ORTHO05D004658 5.0e-10 68.2 51 70.6
Peaxi162Scf00033g01410 Petunia axillaris HOM05D003864 ORTHO05D004658 5.0e-10 68.2 52 63.5
QL06p007391 Quercus lobata HOM05D003864 ORTHO05D004658 6.5e-10 67.8 53 67.9
Solyc01g067630.3 Solanum lycopersicum HOM05D003864 ORTHO05D004658 6.5e-10 67.8 50 64.0
Sopen01g029580 Solanum pennellii HOM05D003864 ORTHO05D004658 6.5e-10 67.8 50 64.0
Migut.G00209 Erythranthe guttata HOM05D003864 ORTHO05D004658 8.5e-10 67.4 43 72.1
Peaxi162Scf00386g00316 Petunia axillaris HOM05D003864 ORTHO05D004658 8.5e-10 67.4 102 40.2
ECA240G1720 Erigeron canadensis HOM05D003864 ORTHO05D004658 1.4e-09 66.6 52 59.6
Sp4g21430 Schrenkiella parvula HOM05D003864 ORTHO05D004658 1.4e-09 66.6 54 61.1
CSS0003637 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 1.9e-09 66.2 39 76.9
Carub.0004s2113 Capsella rubella HOM05D003864 ORTHO05D004658 1.9e-09 66.2 54 57.4
CiPaw.02G086600 Carya illinoinensis HOM05D003864 ORTHO05D004658 1.9e-09 66.2 51 66.7
PGR031G0559 Punica granatum HOM05D003864 ORTHO05D004658 1.9e-09 66.2 54 63.0
PGSC0003DMG400010656 Solanum tuberosum HOM05D003864 ORTHO05D004658 1.9e-09 66.2 50 64.0
AT2G39080 Arabidopsis thaliana HOM05D003864 ORTHO05D004658 2.5e-09 65.9 106 38.7
Sed0008062 Sechium edule HOM05D003864 ORTHO05D004658 2.5e-09 65.9 54 63.0
SGA_v2.0_scaffold89G27550 Striga asiatica HOM05D003864 ORTHO05D004658 2.5e-09 65.9 52 63.5
CSS0011053 Camellia sinensis var. sinensis HOM05D003864 ORTHO05D004658 3.2e-09 65.5 37 81.1
Duzib151G0071 Durio zibethinus HOM05D003864 ORTHO05D004658 3.2e-09 65.5 57 61.4
THA.LOC104821766 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 3.2e-09 65.5 105 42.9
vmacro22597 Vaccinium macrocarpon HOM05D003864 ORTHO05D004658 5.5e-09 64.7 37 78.4
AL4G36380 Arabidopsis lyrata HOM05D003864 ORTHO05D004658 1.2e-08 63.5 51 58.8
Thecc.04G277700 Theobroma cacao HOM05D003864 ORTHO05D004658 1.6e-08 63.2 85 49.4
FAN07G1078 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.1e-08 62.8 57 59.6
FAN17G0790 Fragaria x ananassa HOM05D003864 ORTHO05D004658 2.1e-08 62.8 57 59.6
SGA_v2.0_scaffold57G20242 Striga asiatica HOM05D003864 ORTHO05D004658 2.1e-08 62.8 53 60.4
THA.LOC104820237 Tarenaya hassleriana HOM05D003864 ORTHO05D004658 2.1e-08 62.8 84 44.0
Cc03_g02350 Coffea canephora HOM05D003864 ORTHO05D004658 2.7e-08 62.4 37 73.0
A05p07200 Brassica napus HOM05D003864 ORTHO05D004658 3.6e-08 62.0 55 58.2
BraA05t19685Z Brassica rapa HOM05D003864 ORTHO05D004658 3.6e-08 62.0 55 58.2
A03p21870 Brassica napus HOM05D003864 ORTHO05D004658 4.7e-08 61.6 55 58.2
BolC3t14979H Brassica oleracea HOM05D003864 ORTHO05D004658 4.7e-08 61.6 54 59.3
BraA03t11423Z Brassica rapa HOM05D003864 ORTHO05D004658 4.7e-08 61.6 55 58.2
FAN22G0711 Fragaria x ananassa HOM05D003864 ORTHO05D004658 6.1e-08 61.2 57 57.9
Ciclev10005325m.g Citrus clementina HOM05D003864 ORTHO05D004658 7.9e-08 60.8 54 59.3
SalBow2G1899 Salvia bowleyana HOM05D003864 ORTHO05D004658 7.9e-08 60.8 118 35.6
Hund20596 Selenicereus undatus HOM05D003864 ORTHO05D004658 7.9e-08 60.8 51 58.8
Sc19g0004950 Simmondsia chinensis HOM05D003864 ORTHO05D004658 7.9e-08 60.8 75 46.7
CDE05G0625 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 1.0e-07 60.5 52 50.0
Nitab4.5_0000784g0010 Nicotiana tabacum HOM05D003864 ORTHO05D004658 1.0e-07 60.5 41 65.9
BcaB02g09145 Brassica carinata HOM05D003864 ORTHO05D004658 1.4e-07 60.1 55 56.4
HanXRQChr13g0411231 Helianthus annuus HOM05D003864 ORTHO05D004658 1.4e-07 60.1 85 43.5
Atru.chr4.2755 Acer truncatum HOM05D003864 ORTHO05D004658 1.8e-07 59.7 54 57.4
C03p25940 Brassica napus HOM05D003864 ORTHO05D004658 1.8e-07 59.7 54 57.4
RcHm_v2.0_Chr4g0421021 Rosa chinensis HOM05D003864 ORTHO05D004658 1.8e-07 59.7 76 48.7
Aa31LG5G20520 Aethionema arabicum HOM05D003864 ORTHO05D004658 2.3e-07 59.3 84 42.9
CDE01G0506 Ceratophyllum demersum HOM05D003864 ORTHO05D004658 2.3e-07 59.3 55 52.7
FvH4_4g17200 Fragaria vesca HOM05D003864 ORTHO05D004658 3.0e-07 58.9 123 38.2
PGR004G1016 Punica granatum HOM05D003864 ORTHO05D004658 3.0e-07 58.9 82 47.6
Eucgr.B01266 Eucalyptus grandis HOM05D003864 ORTHO05D004658 6.7e-07 57.8 101 40.6
MD16G1174800 Malus domestica HOM05D003864 ORTHO05D004658 6.7e-07 57.8 52 61.5
BcaB01g03648 Brassica carinata HOM05D003864 ORTHO05D004658 1.1e-06 57.0 53 54.7
DCAR_027110 Daucus carota HOM05D003864 ORTHO05D004658 2.6e-06 55.8 51 54.9
MD13G1173800 Malus domestica HOM05D003864 ORTHO05D004658 4.4e-06 55.1 54 57.4
BcaC02g12038 Brassica carinata HOM05D003864 ORTHO05D004658 5.7e-06 54.7 56 51.8
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 5.7e-06 54.7 56 51.8
C04p08610 Brassica napus HOM05D003864 ORTHO05D004658 7.4e-06 54.3 56 51.8


User provided reference genes

Program Settings