Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 9.2e-34 146.4 76 100.0
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.1e-31 139.4 77 97.4
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 9.9e-20 99.8 82 69.5
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 1.6e-17 92.4 83 66.3
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.1e-17 92.0 78 73.1
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 4.6e-17 90.9 83 65.1
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.0e-16 89.7 83 67.5
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 6.6e-16 87.0 77 67.5
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 8.6e-16 86.7 72 65.3
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 4.3e-15 84.3 77 63.6
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 1.2e-14 82.8 76 60.5
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.4e-13 79.3 76 52.6
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 1.8e-13 79.0 76 61.8
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 3.1e-13 78.2 78 62.8
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 5.2e-13 77.4 91 59.3
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 6.8e-13 77.0 72 63.9
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 8.9e-13 76.6 79 57.0
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 8.9e-13 76.6 79 57.0
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.2e-12 76.3 80 63.8
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.5e-12 75.9 81 58.0
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.4e-12 74.7 73 58.9
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.4e-12 74.3 77 64.9
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.8e-12 73.9 74 64.9
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 7.6e-12 73.6 77 58.4
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 9.9e-12 73.2 72 65.3
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 9.9e-12 73.2 78 52.6
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 1.3e-11 72.8 76 63.2
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 1.3e-11 72.8 76 63.2
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 2.2e-11 72.0 67 67.2
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 2.2e-11 72.0 78 61.5
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 2.2e-11 72.0 78 61.5
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.9e-11 71.6 72 63.9
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.9e-11 71.6 76 63.2
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.8e-11 71.2 74 58.1
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 3.8e-11 71.2 65 64.6
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 4.9e-11 70.9 76 59.2
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.9e-11 70.9 77 62.3
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 4.9e-11 70.9 73 63.0
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 4.9e-11 70.9 72 63.9
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 6.4e-11 70.5 79 59.5
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 6.4e-11 70.5 79 59.5
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 8.4e-11 70.1 72 65.3
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.1e-10 69.7 88 45.5
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.1e-10 69.7 85 52.9
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 1.4e-10 69.3 84 59.5
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 1.4e-10 69.3 79 55.7
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.4e-10 69.3 82 56.1
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 1.4e-10 69.3 79 54.4
CSS0046147 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.9e-10 68.9 67 59.7
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 2.4e-10 68.6 71 57.7
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 3.2e-10 68.2 80 51.2
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 3.2e-10 68.2 71 57.7
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 4.1e-10 67.8 70 58.6
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 4.1e-10 67.8 70 55.7
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 5.4e-10 67.4 78 53.8
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 5.4e-10 67.4 77 54.5
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.4e-10 67.4 77 58.4
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 9.2e-10 66.6 77 59.7
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.2e-09 66.2 67 59.7
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.2e-09 66.2 81 55.6
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 1.6e-09 65.9 69 56.5
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.6e-09 65.9 79 54.4
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.6e-09 65.9 79 54.4
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 1.6e-09 65.9 81 51.9
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 2.1e-09 65.5 66 48.5
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 3.5e-09 64.7 77 51.9
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 3.5e-09 64.7 81 61.7
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 3.5e-09 64.7 71 53.5
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 4.6e-09 64.3 81 49.4
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 4.6e-09 64.3 81 49.4
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 4.6e-09 64.3 78 53.8
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 6.0e-09 63.9 78 53.8
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 6.0e-09 63.9 76 57.9
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 6.0e-09 63.9 79 53.2
Cc05_g00090 Coffea canephora HOM05D002385 ORTHO05D002245 7.8e-09 63.5 81 59.3
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 7.8e-09 63.5 67 58.2
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.3e-08 62.8 65 56.9
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.3e-08 62.8 68 58.8
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.3e-08 62.8 71 54.9
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.3e-08 62.8 81 55.6
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.3e-08 62.8 81 55.6
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.3e-08 62.8 77 55.8
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.3e-08 62.8 78 44.9
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 1.7e-08 62.4 77 55.8
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.3e-08 62.0 65 60.0
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.0e-08 61.6 68 57.4
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 3.0e-08 61.6 85 49.4
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 5.1e-08 60.8 80 51.2
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 5.1e-08 60.8 73 54.8
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 6.6e-08 60.5 64 59.4
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 6.6e-08 60.5 68 47.1
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 8.7e-08 60.1 61 55.7
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 8.7e-08 60.1 62 59.7
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 8.7e-08 60.1 95 41.1
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 8.7e-08 60.1 74 47.3
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 8.7e-08 60.1 88 39.8
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 8.7e-08 60.1 90 51.1
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 1.1e-07 59.7 76 46.1
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.1e-07 59.7 62 59.7
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 1.1e-07 59.7 64 59.4
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.1e-07 59.7 62 59.7
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 1.1e-07 59.7 77 49.4
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.5e-07 59.3 68 52.9
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 1.5e-07 59.3 64 59.4
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 1.9e-07 58.9 77 51.9
HanXRQChr01g0017681 Helianthus annuus HOM05D002385 ORTHO05D002245 2.5e-07 58.5 86 44.2
arahy.Tifrunner.gnm1.ann1.7QB2HQ Arachis hypogaea HOM05D002385 ORTHO05D002245 3.3e-07 58.2 85 50.6
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 3.3e-07 58.2 76 44.7
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 3.3e-07 58.2 76 44.7
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 3.3e-07 58.2 77 45.5
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 3.3e-07 58.2 80 45.0
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 3.3e-07 58.2 82 53.7
Duzib235G0963 Durio zibethinus HOM05D014462 ORTHO05D002245 4.3e-07 57.8 99 40.4
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 4.3e-07 57.8 82 46.3
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 4.3e-07 57.8 72 52.8
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 4.3e-07 57.8 56 60.7
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 4.3e-07 57.8 52 67.3
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 5.6e-07 57.4 74 47.3
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.6e-07 57.4 76 46.1
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 7.3e-07 57.0 76 46.1
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 7.3e-07 57.0 76 46.1
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 7.3e-07 57.0 76 46.1
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 7.3e-07 57.0 95 36.8
Dinv05962 Davidia involucrata HOM05D014462 ORTHO05D018947 7.3e-07 57.0 100 37.0
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 7.3e-07 57.0 76 47.4
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 7.3e-07 57.0 88 40.9
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 9.6e-07 56.6 65 56.9
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 9.6e-07 56.6 76 48.7
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 9.6e-07 56.6 79 51.9
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 9.6e-07 56.6 72 54.2
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 9.6e-07 56.6 76 46.1
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 1.2e-06 56.2 76 52.6
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-06 56.2 70 54.3
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 1.2e-06 56.2 77 44.2
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.2e-06 56.2 82 54.9
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 1.6e-06 55.8 68 55.9
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 1.6e-06 55.8 72 55.6
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 1.6e-06 55.8 66 57.6
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 1.6e-06 55.8 76 48.7
Medtr3g081140 Medicago truncatula HOM05D002385 ORTHO05D002245 2.1e-06 55.5 72 58.3
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 2.1e-06 55.5 73 53.4
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.1e-06 55.5 79 41.8
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.8e-06 55.1 76 44.7
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 2.8e-06 55.1 76 47.4
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 2.8e-06 55.1 73 52.1
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 3.6e-06 54.7 76 44.7
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 3.6e-06 54.7 76 44.7
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 3.6e-06 54.7 65 52.3
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 4.7e-06 54.3 66 56.1
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.7e-06 54.3 56 57.1
Thecc.06G141600 Theobroma cacao HOM05D014462 ORTHO05D002245 4.7e-06 54.3 94 42.6
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 6.2e-06 53.9 76 44.7
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 6.2e-06 53.9 76 42.1
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 6.2e-06 53.9 80 48.8
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 6.2e-06 53.9 78 46.2
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 6.2e-06 53.9 61 57.4
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 6.2e-06 53.9 56 60.7
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 8.1e-06 53.5 77 39.0
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 8.1e-06 53.5 77 50.6
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 8.1e-06 53.5 77 46.8
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 8.1e-06 53.5 68 47.1


User provided reference genes

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