Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.9e-59 230.3 109 100.0
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.9e-25 118.6 58 94.8
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.9e-25 118.6 58 94.8
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.8e-25 118.2 58 93.1
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 1.9e-24 115.9 58 89.7
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.5e-24 115.5 99 57.6
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 5.5e-24 114.4 99 58.6
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 5.5e-24 114.4 99 58.6
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 89.7
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 89.7
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 89.7
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 89.7
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 86.2
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 86.2
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 86.2
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 89.7
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 7.2e-24 114.0 60 85.0
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 7.2e-24 114.0 60 85.0
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 86.2
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 87.9
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 86.2
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 89.7
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 86.2
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 7.2e-24 114.0 58 89.7
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 9.5e-24 113.6 58 86.2
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 9.5e-24 113.6 58 84.5
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.2e-23 113.2 82 65.9
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.2e-23 113.2 58 86.2
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 1.2e-23 113.2 99 57.6
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 87.9
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 84.5
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 86.2
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 86.2
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 87.9
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 84.5
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 86.2
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 84.5
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 84.5
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 84.5
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 87.9
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.6e-23 112.8 58 87.9
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 2.1e-23 112.5 58 84.5
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 2.1e-23 112.5 58 82.8
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.1e-23 112.5 58 86.2
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.1e-23 112.5 58 82.8
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.1e-23 112.5 58 82.8
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 2.8e-23 112.1 58 84.5
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.8e-23 112.1 58 84.5
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 2.8e-23 112.1 58 84.5
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 2.8e-23 112.1 58 82.8
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 3.6e-23 111.7 58 84.5
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.6e-23 111.7 99 56.6
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.6e-23 111.7 99 56.6
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 4.7e-23 111.3 59 83.1
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 4.7e-23 111.3 58 84.5
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 4.7e-23 111.3 99 55.6
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 4.7e-23 111.3 58 82.8
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 6.1e-23 110.9 58 82.8
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 6.1e-23 110.9 58 82.8
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 6.1e-23 110.9 58 84.5
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 6.1e-23 110.9 58 82.8
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 6.1e-23 110.9 58 82.8
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 6.1e-23 110.9 58 84.5
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 6.1e-23 110.9 58 82.8
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 6.1e-23 110.9 58 82.8
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 6.1e-23 110.9 58 82.8
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 6.1e-23 110.9 58 82.8
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 8.0e-23 110.5 58 84.5
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 8.0e-23 110.5 58 84.5
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 8.0e-23 110.5 58 84.5
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 8.0e-23 110.5 58 82.8
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 1.0e-22 110.2 99 54.5
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 1.0e-22 110.2 58 84.5
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.0e-22 110.2 58 82.8
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 1.4e-22 109.8 58 86.2
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.4e-22 109.8 58 86.2
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 1.4e-22 109.8 58 86.2
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.4e-22 109.8 58 84.5
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.4e-22 109.8 58 82.8
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.4e-22 109.8 58 82.8
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.4e-22 109.8 58 82.8
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.4e-22 109.8 58 81.0
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.8e-22 109.4 58 82.8
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.8e-22 109.4 58 84.5
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.8e-22 109.4 58 82.8
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 2.3e-22 109.0 58 82.8
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 2.3e-22 109.0 99 57.6
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.3e-22 109.0 58 84.5
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 2.3e-22 109.0 58 82.8
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 2.3e-22 109.0 58 82.8
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 2.3e-22 109.0 99 56.6
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 2.3e-22 109.0 99 56.6
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.3e-22 109.0 99 56.6
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.0e-22 108.6 58 82.8
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 3.0e-22 108.6 58 84.5
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 6.8e-22 107.5 58 81.0
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 8.9e-22 107.1 58 82.8
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 8.9e-22 107.1 58 82.8
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 8.9e-22 107.1 58 82.8
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 8.9e-22 107.1 58 79.3
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.2e-21 106.7 58 84.5
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.2e-21 106.7 58 84.5
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 2.0e-21 105.9 58 81.0
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 2.0e-21 105.9 58 81.0
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.0e-21 105.9 58 81.0
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.0e-21 105.9 58 81.0
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.0e-21 105.9 58 81.0
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.0e-21 105.9 58 81.0
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 2.0e-21 105.9 58 81.0
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 2.6e-21 105.5 58 79.3
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 3.4e-21 105.1 58 79.3
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 1.7e-20 102.8 58 77.6
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 1.7e-20 102.8 58 77.6
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 4.9e-20 101.3 58 79.3
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.1e-19 100.1 56 80.4
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.4e-19 99.0 58 77.6
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 2.0e-18 95.9 58 72.4
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 3.5e-18 95.1 58 67.2
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.0e-17 93.6 58 69.0
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 3.8e-17 91.7 58 67.2
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 2.5e-16 89.0 58 63.8
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 3.6e-15 85.1 47 74.5
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.9e-11 72.8 61 52.5
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 5.4e-11 71.2 58 53.4
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 6.0e-10 67.8 33 84.8
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.3e-08 62.0 60 48.3
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 4.3e-08 61.6 59 45.8
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 7.3e-08 60.8 58 41.4
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 1.2e-07 60.1 50 52.0
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.6e-07 59.7 100 37.0
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.8e-07 58.9 58 39.7
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 8.0e-07 57.4 58 58.6
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.3e-06 55.8 27 92.6
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.3e-06 55.8 27 92.6
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 2.3e-06 55.8 27 92.6
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 4.0e-06 55.1 31 71.0


User provided reference genes

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