Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047510 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D043344 5.3e-162 574.3 297 100.0
CSS0027545 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D043344 7.8e-129 464.2 337 77.4
Actinidia38328 Actinidia chinensis HOM05D000344 ORTHO05D005296 2.6e-68 263.1 296 56.4
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 7.9e-65 251.5 357 47.3
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 1.4e-61 240.7 351 45.3
Dinv41384 Davidia involucrata HOM05D000344 ORTHO05D005296 4.4e-31 139.4 201 48.3
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 9.5e-26 121.7 346 34.4
GSVIVG01014079001 Vitis vinifera HOM05D000344 ORTHO05D005296 3.4e-23 113.2 333 33.0
Lj9A682G44 Lonicera japonica HOM05D000344 ORTHO05D005296 2.4e-21 107.1 368 32.3
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 3.5e-20 103.2 356 31.7
TAR636G0133 Trochodendron aralioides HOM05D000344 ORTHO05D005296 2.3e-19 100.5 227 38.8
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 6.6e-19 99.0 326 32.5
Nn2g12347 Nelumbo nucifera HOM05D000344 ORTHO05D005296 5.6e-18 95.9 350 32.0
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 7.3e-18 95.5 327 31.5
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 7.3e-18 95.5 341 29.0
GSVIVG01001912001 Vitis vinifera HOM05D000344 ORTHO05D005296 2.1e-17 94.0 96 52.1
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 2.8e-17 93.6 303 33.0
Cfa021217 Carpinus fangiana HOM05D000344 ORTHO05D005296 8.0e-17 92.0 341 29.3
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 2.3e-16 90.5 315 30.8
Hma1.2p1_0222F.1_g093490 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 2.3e-16 90.5 321 29.3
Hma1.2p1_0028F.1_g017530 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 1.5e-15 87.8 164 37.8
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 1.3e-14 84.7 329 28.6
Hma1.2p1_0222F.1_g093480 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 1.7e-14 84.3 69 60.9
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 2.9e-14 83.6 334 25.7
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 4.9e-14 82.8 318 28.6
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 3.2e-13 80.1 267 29.6
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 5.4e-13 79.3 95 45.3
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 1.2e-12 78.2 123 43.1
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.2e-12 78.2 334 27.8
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 1.6e-12 77.8 339 28.9
DCAR_014812 Daucus carota HOM05D000344 ORTHO05D004969 2.0e-12 77.4 326 27.9
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 2.0e-12 77.4 124 42.7
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 2.7e-12 77.0 94 45.7
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 4.6e-12 76.3 315 28.6
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 4.6e-12 76.3 350 29.1
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 6.0e-12 75.9 341 27.6
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 1.0e-11 75.1 333 27.3
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 1.3e-11 74.7 361 26.6
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 1.7e-11 74.3 311 28.6
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 2.3e-11 73.9 331 26.3
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 2.3e-11 73.9 334 27.8
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 3.0e-11 73.6 337 27.6
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 5.0e-11 72.8 319 28.5
Hund12031 Selenicereus undatus HOM05D000344 ORTHO05D005296 6.6e-11 72.4 287 28.6
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 6.6e-11 72.4 334 26.6
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 8.6e-11 72.0 319 26.3
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 1.5e-10 71.2 208 32.7
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 1.9e-10 70.9 99 47.5
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 5.6e-10 69.3 141 36.2
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 7.3e-10 68.9 110 40.0
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 7.3e-10 68.9 336 29.5
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 7.3e-10 68.9 333 28.2
Sed0023248 Sechium edule HOM05D000344 ORTHO05D005296 7.3e-10 68.9 320 27.5
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 1.2e-09 68.2 295 28.1
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 1.2e-09 68.2 335 26.3
CiPaw.15G176800 Carya illinoinensis HOM05D000344 ORTHO05D005296 1.6e-09 67.8 145 37.9
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 1.6e-09 67.8 342 27.5
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 3.6e-09 66.6 94 40.4
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 3.6e-09 66.6 328 26.8
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 6.2e-09 65.9 205 32.2
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 6.2e-09 65.9 119 38.7
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 6.2e-09 65.9 305 28.2
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 8.0e-09 65.5 124 41.9
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 8.0e-09 65.5 313 25.9
Cpa.g.sc46.148 Carica papaya HOM05D000344 ORTHO05D005296 1.1e-08 65.1 110 38.2
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 1.1e-08 65.1 194 31.4
PSO675G3655 Papaver somniferum HOM05D000344 ORTHO05D005296 1.4e-08 64.7 312 27.6
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 1.4e-08 64.7 339 29.2
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 1.4e-08 64.7 353 25.8
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 1.4e-08 64.7 288 28.1
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 8.9e-08 62.0 89 42.7
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 8.9e-08 62.0 124 41.1
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 8.9e-08 62.0 89 42.7
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 8.9e-08 62.0 89 42.7
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 8.9e-08 62.0 124 41.1
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 1.2e-07 61.6 281 29.2
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 1.5e-07 61.2 186 37.1
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 2.0e-07 60.8 340 24.4
Glyma.02G203500 Glycine max HOM05D000344 ORTHO05D005296 4.4e-07 59.7 83 39.8
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 4.4e-07 59.7 343 26.5
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 9.8e-07 58.5 294 25.9
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 1.3e-06 58.2 198 30.8
PSO732G0388 Papaver somniferum HOM05D000344 ORTHO05D005296 1.7e-06 57.8 222 30.6
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 2.2e-06 57.4 300 26.0


User provided reference genes

Program Settings