Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 2.0e-19 98.2 54 100.0
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 6.1e-16 86.7 54 79.6
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 6.1e-16 86.7 54 81.5
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 8.0e-16 86.3 54 77.8
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 8.0e-16 86.3 54 77.8
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 3.0e-15 84.3 51 80.4
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 3.4e-14 80.9 54 74.1
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 9.8e-14 79.3 54 70.4
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 9.8e-14 79.3 53 73.6
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 3.7e-13 77.4 51 72.5
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 4.9e-13 77.0 54 68.5
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 8.3e-13 76.3 51 70.6
FvH4_6g48300 Fragaria vesca HOM05D008101 ORTHO05D010163 1.1e-12 75.9 49 73.5
FAN09G0090 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.1e-12 75.9 49 73.5
FAN14G5148 Fragaria x ananassa HOM05D008101 ORTHO05D010163 1.1e-12 75.9 49 73.5
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 1.4e-12 75.5 51 70.6
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 3.2e-12 74.3 54 68.5
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 4.1e-12 73.9 54 70.4
FAN09G1556 Fragaria x ananassa HOM05D008101 ORTHO05D010163 7.0e-12 73.2 48 72.9
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 9.2e-12 72.8 54 68.5
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 2.0e-11 71.6 51 70.6
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 2.0e-11 71.6 49 71.4
Nn3g17291 Nelumbo nucifera HOM05D008101 ORTHO05D010163 2.7e-11 71.2 54 70.4
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 2.7e-11 71.2 54 64.8
FAN05G3293 Fragaria x ananassa HOM05D008101 ORTHO05D010163 3.5e-11 70.9 48 72.9
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 3.5e-11 70.9 54 64.8
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 3.5e-11 70.9 54 66.7
FAN02G2446 Fragaria x ananassa HOM05D008101 ORTHO05D010163 7.8e-11 69.7 48 68.8
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 7.8e-11 69.7 54 63.0
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 1.0e-10 69.3 51 68.6
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 1.7e-10 68.6 54 61.1
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 1.7e-10 68.6 54 61.1
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 2.3e-10 68.2 54 64.8
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 2.3e-10 68.2 54 64.8
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 2.9e-10 67.8 54 57.4
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 3.9e-10 67.4 54 64.8
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 6.6e-10 66.6 54 55.6
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 1.5e-09 65.5 49 63.3
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 1.9e-09 65.1 44 75.0
EL10Ac9g21543 Beta vulgaris HOM05D008101 ORTHO05D010163 5.6e-09 63.5 52 57.7
FAN05G0138 Fragaria x ananassa HOM05D000576 ORTHO05D010163 7.3e-09 63.2 45 71.1
FAN23G1982 Fragaria x ananassa HOM05D000576 ORTHO05D010163 7.3e-09 63.2 45 71.1
Aqoxy3G03441 Aquilegia oxysepala HOM05D008101 ORTHO05D010163 9.5e-09 62.8 51 62.7
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 1.2e-08 62.4 54 53.7
Lsat_1_v5_gn_4_179600 Lactuca sativa HOM05D008101 ORTHO05D010163 3.6e-08 60.8 48 58.3
MBI02_g12271_MAGBIO Magnolia biondii HOM05D008101 ORTHO05D010163 6.1e-08 60.1 45 60.0
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 8.0e-08 59.7 52 59.6
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 8.0e-08 59.7 50 58.0
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 1.0e-07 59.3 52 57.7
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 1.0e-07 59.3 52 57.7
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 1.0e-07 59.3 52 57.7
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 1.0e-07 59.3 52 57.7
SEGI_19148 Sequoiadendron giganteum HOM05D008101 ORTHO05D010163 1.0e-07 59.3 48 56.2
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 1.4e-07 58.9 52 57.7
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 2.3e-07 58.2 52 55.8
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 2.3e-07 58.2 52 55.8
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 3.1e-07 57.8 52 57.7
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 3.1e-07 57.8 52 57.7
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 3.1e-07 57.8 52 55.8
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 4.0e-07 57.4 52 55.8
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 4.0e-07 57.4 52 55.8
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 4.0e-07 57.4 52 55.8
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 5.2e-07 57.0 52 55.8
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 5.2e-07 57.0 51 60.8
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 6.8e-07 56.6 52 55.8
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 6.8e-07 56.6 52 55.8
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 8.9e-07 56.2 49 53.1
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 8.9e-07 56.2 52 55.8
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 8.9e-07 56.2 52 55.8
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 8.9e-07 56.2 52 55.8
Lalb_Chr06g0175261 Lupinus albus HOM05D008101 ORTHO05D010163 1.2e-06 55.8 46 63.0
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 2.6e-06 54.7 52 55.8
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 3.4e-06 54.3 49 55.1
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 4.4e-06 53.9 49 53.1


User provided reference genes

Program Settings