Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047448 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 2.3e-282 974.9 496 100.0
CSS0040388 Camellia sinensis var. sinensis HOM05D007800 ORTHO05D009881 7.5e-278 959.9 496 98.4
Actinidia03799 Actinidia chinensis HOM05D007800 ORTHO05D009881 6.7e-202 707.6 496 71.2
Hma1.2p1_0800F.1_g220040 Hydrangea macrophylla HOM05D007800 ORTHO05D009881 4.0e-186 655.2 502 68.5
Dinv36755 Davidia involucrata HOM05D007800 ORTHO05D009881 5.7e-185 651.4 497 68.4
GSVIVG01015219001 Vitis vinifera HOM05D007800 ORTHO05D009881 2.4e-183 646.0 498 65.7
Cfa003104 Carpinus fangiana HOM05D007800 ORTHO05D009881 1.2e-179 633.6 501 64.3
QL02p062921 Quercus lobata HOM05D007800 ORTHO05D009881 8.9e-178 627.5 499 64.7
Haze_25896 Corylus avellana HOM05D007800 ORTHO05D009881 1.4e-175 620.2 501 63.9
Prupe.7G211900 Prunus persica HOM05D007800 ORTHO05D009881 4.4e-169 598.6 502 61.8
TAR626G0221 Trochodendron aralioides HOM05D007800 ORTHO05D009881 7.0e-167 591.3 510 61.4
Nitab4.5_0010222g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 1.6e-166 590.1 500 61.0
MD02G1076500 Malus domestica HOM05D007800 ORTHO05D009881 1.0e-165 587.4 502 60.0
Duzib150G1500 Durio zibethinus HOM05D007800 ORTHO05D009881 1.1e-164 583.9 505 61.0
Cc06_g11240 Coffea canephora HOM05D007800 ORTHO05D009881 1.6e-163 580.1 501 59.1
PGSC0003DMG400002319 Solanum tuberosum HOM05D007800 ORTHO05D009881 2.1e-163 579.7 501 58.7
Nitab4.5_0010434g0010 Nicotiana tabacum HOM05D007800 ORTHO05D009881 2.8e-163 579.3 500 60.2
TWI32G0405 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 3.4e-161 572.4 505 59.8
CANSAT56G2700 Cannabis sativa HOM05D007800 ORTHO05D009881 8.3e-160 567.8 504 59.3
FvH4_1g07200 Fragaria vesca HOM05D007800 ORTHO05D009881 1.9e-159 566.6 503 59.6
RcHm_v2.0_Chr2g0093101 Rosa chinensis HOM05D007800 ORTHO05D009881 1.9e-159 566.6 503 60.0
Cpa.g.sc93.18 Carica papaya HOM05D007800 ORTHO05D009881 3.2e-159 565.8 510 60.0
Potri.006G151500 Populus trichocarpa HOM05D007800 ORTHO05D009881 2.7e-158 562.8 501 58.9
CiPaw.03G217600 Carya illinoinensis HOM05D007800 ORTHO05D009881 1.3e-157 560.5 501 59.7
Sopen07g014250 Solanum pennellii HOM05D007800 ORTHO05D009881 1.9e-156 556.6 502 58.0
Ciclev10010231m.g Citrus clementina HOM05D007800 ORTHO05D009881 2.5e-156 556.2 508 57.9
FAN19G0334 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.2e-155 553.9 488 59.6
Gohir.A06G071700 Gossypium hirsutum HOM05D007800 ORTHO05D009881 2.1e-155 553.1 506 57.5
FAN23G2336 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.8e-155 552.7 488 59.6
Gorai.010G081900 Gossypium raimondii HOM05D007800 ORTHO05D009881 1.4e-154 550.4 506 57.3
Sabra06G0120000 Salix brachista HOM05D007800 ORTHO05D009881 1.5e-153 547.0 500 57.8
Solyc07g026640.3 Solanum lycopersicum HOM05D007800 ORTHO05D009881 5.8e-153 545.0 497 56.7
Lsat_1_v5_gn_7_37520 Lactuca sativa HOM05D007800 ORTHO05D009881 1.9e-151 540.0 504 56.2
Eucgr.C00905 Eucalyptus grandis HOM05D007800 ORTHO05D009881 3.2e-151 539.3 504 56.9
MSTRG.19524 Avicennia marina HOM05D007800 ORTHO05D009881 4.1e-151 538.9 513 57.5
Aqoxy7G01245 Aquilegia oxysepala HOM05D007800 ORTHO05D009881 3.5e-150 535.8 518 56.6
Oeu018234.1 Olea europaea HOM05D007800 ORTHO05D009881 1.9e-148 530.0 487 56.5
Migut.K00591 Erythranthe guttata HOM05D007800 ORTHO05D009881 9.6e-148 527.7 505 54.7
COL.COLO4_18216 Corchorus olitorius HOM05D007800 ORTHO05D009881 2.2e-144 516.5 429 62.9
Peaxi162Scf00141g00327 Petunia axillaris HOM05D007800 ORTHO05D009881 1.4e-143 513.8 505 56.8
HanXRQChr03g0060771 Helianthus annuus HOM05D007800 ORTHO05D009881 4.2e-143 512.3 501 53.5
PGR142G2964 Punica granatum HOM05D007800 ORTHO05D009881 1.0e-141 507.7 504 53.4
Manes.16G103100 Manihot esculenta HOM05D007800 ORTHO05D009881 9.0e-138 494.6 420 59.5
PSO832G3388 Papaver somniferum HOM05D007800 ORTHO05D009881 9.9e-137 491.1 504 54.6
SGA_v2.0_scaffold23G09996 Striga asiatica HOM05D007800 ORTHO05D009881 1.4e-135 487.3 506 52.4
THA.LOC104801881 Tarenaya hassleriana HOM05D007800 ORTHO05D009881 1.4e-135 487.3 507 52.3
SalBow1G2412 Salvia bowleyana HOM05D007800 ORTHO05D009881 1.2e-134 484.2 446 55.4
AT4G29560 Arabidopsis thaliana HOM05D007800 ORTHO05D009881 2.7e-134 483.0 508 52.2
ECA240G1450 Erigeron canadensis HOM05D007800 ORTHO05D009881 2.7e-134 483.0 519 51.3
Atru.BG.11.p Acer truncatum HOM05D007800 ORTHO05D009881 4.6e-134 482.3 424 58.5
A08p19590 Brassica napus HOM05D007800 ORTHO05D009881 6.0e-134 481.9 510 49.6
BolC3t21231H Brassica oleracea HOM05D007800 ORTHO05D009881 6.0e-134 481.9 510 50.0
BcaB03g12612 Brassica carinata HOM05D007800 ORTHO05D009881 1.8e-133 480.3 508 50.2
C03p89220 Brassica napus HOM05D007800 ORTHO05D009881 1.8e-133 480.3 510 50.0
AL7G22820 Arabidopsis lyrata HOM05D007800 ORTHO05D009881 3.0e-133 479.6 507 51.1
BcaC01g01177 Brassica carinata HOM05D007800 ORTHO05D009881 5.1e-133 478.8 510 49.8
Thhalv10027131m.g Eutrema salsugineum HOM05D007800 ORTHO05D009881 5.6e-132 475.3 518 49.0
BraA08t33918Z Brassica rapa HOM05D007800 ORTHO05D009881 6.2e-131 471.9 513 48.9
CARHR237380 Cardamine hirsuta HOM05D007800 ORTHO05D009881 3.4e-129 466.1 508 50.0
Carub.0007s1100 Capsella rubella HOM05D007800 ORTHO05D009881 7.6e-129 464.9 506 50.6
FAN26G1329 Fragaria x ananassa HOM05D007800 ORTHO05D009881 1.7e-128 463.8 416 59.4
FAN26G3078 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.9e-128 463.0 416 58.9
Thecc.09G091400 Theobroma cacao HOM05D007800 ORTHO05D009881 1.6e-126 457.2 415 57.1
Nn8g38899 Nelumbo nucifera HOM05D007800 ORTHO05D009881 3.0e-125 453.0 415 58.6
Sc08g0008380 Simmondsia chinensis HOM05D007800 ORTHO05D009881 9.6e-124 448.0 506 50.0
TWI32G0422 Tripterygium wilfordii HOM05D007800 ORTHO05D009881 9.0e-122 441.4 416 56.5
MBI01_g01250_MAGBIO Magnolia biondii HOM05D007800 ORTHO05D009881 7.1e-119 431.8 510 47.8
DCAR_010680 Daucus carota HOM05D007800 ORTHO05D009881 6.0e-118 428.7 411 54.5
PSO063G3968 Papaver somniferum HOM05D007800 ORTHO05D009881 3.9e-109 399.4 416 53.6
FAN28G0657 Fragaria x ananassa HOM05D007800 ORTHO05D009881 2.6e-100 370.2 298 62.1
Gohir.D06G070300 Gossypium hirsutum HOM05D007800 ORTHO05D009881 9.1e-98 361.7 362 55.0
MD15G1205200 Malus domestica HOM05D007800 ORTHO05D009881 1.7e-96 357.5 463 45.6
HPP92_005239 Vanilla planifolia HOM05D007800 ORTHO05D009881 5.0e-96 355.9 508 42.7
Lj7P673T61 Lonicera japonica HOM05D007800 ORTHO05D009881 4.8e-91 339.3 242 69.4
SEGI_31551 Sequoiadendron giganteum HOM05D007800 ORTHO05D009881 4.8e-83 312.8 564 39.2
ATR0782G161 Amborella trichopoda HOM05D007800 ORTHO05D009881 2.4e-82 310.5 557 38.1
Os06g0573800 Oryza sativa ssp. japonica HOM05D007800 ORTHO05D009881 7.5e-68 262.3 504 34.5
Zm00001eb385220 Zea mays HOM05D007800 ORTHO05D009881 1.6e-65 254.6 503 34.8
FAN28G2802 Fragaria x ananassa HOM05D007800 ORTHO05D009881 8.6e-48 195.7 165 62.4
Dinv42307 Davidia involucrata HOM05D007800 ORTHO05D009881 7.8e-41 172.6 117 73.5
Mapoly0036s0155 Marchantia polymorpha HOM05D007800 ORTHO05D009881 8.6e-40 169.1 476 28.4
Pp3c4_16520 Physcomitrium patens HOM05D007800 ORTHO05D009881 1.2e-28 132.1 437 27.2
CDE05G3378 Ceratophyllum demersum HOM05D007800 ORTHO05D009881 2.7e-17 94.4 251 31.5
AagrBONN_evm.TU.Sc2ySwM_344.183 Anthoceros agrestis HOM05D007800 ORTHO05D009881 1.3e-16 92.0 427 26.7
SMO302G0010 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 5.6e-07 60.1 91 31.9
SMO353G0419 Selaginella moellendorffii HOM05D001821 ORTHO05D001778 4.8e-06 57.0 67 37.3


User provided reference genes

Program Settings