Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047421 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.2e-77 293.1 152 100.0
CSS0037270 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 3.1e-57 225.3 170 75.9
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 6.9e-57 224.2 165 76.4
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 6.9e-57 224.2 165 76.4
CSS0031848 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 7.2e-46 187.6 162 69.8
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 5.3e-41 171.4 167 61.7
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 2.6e-40 169.1 167 58.7
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 4.5e-40 168.3 167 58.7
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 4.5e-40 168.3 164 57.9
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 3.8e-39 165.2 164 57.3
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 3.2e-38 162.2 167 58.7
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 7.2e-38 161.0 165 52.7
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 1.8e-36 156.4 163 55.2
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 8.8e-36 154.1 161 55.3
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 4.4e-35 151.8 169 53.3
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 7.5e-35 151.0 163 52.8
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 1.7e-34 149.8 166 50.6
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 2.8e-34 149.1 171 53.2
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 3.7e-34 148.7 166 52.4
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 6.3e-34 147.9 166 50.0
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 1.8e-33 146.4 160 53.8
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 2.4e-33 146.0 166 49.4
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 2.4e-33 146.0 167 51.5
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 3.1e-33 145.6 165 50.3
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 3.1e-33 145.6 165 53.3
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 5.3e-33 144.8 167 50.3
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 7.0e-33 144.4 166 50.0
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 9.1e-33 144.1 167 50.9
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 9.1e-33 144.1 166 54.2
Cpa.g.sc89.74 Carica papaya HOM05D003405 ORTHO05D003920 2.7e-32 142.5 165 50.9
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 3.5e-32 142.1 162 48.8
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 3.5e-32 142.1 165 52.7
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 5.9e-32 141.4 156 51.9
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 7.7e-32 141.0 168 47.6
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 2.2e-31 139.4 167 49.7
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 2.2e-31 139.4 164 50.0
Haze_21717 Corylus avellana HOM05D003405 ORTHO05D003920 3.8e-31 138.7 160 50.0
Cc04_g14820 Coffea canephora HOM05D003405 ORTHO05D003920 6.5e-31 137.9 164 51.2
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 5.5e-30 134.8 166 48.2
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 5.5e-30 134.8 157 49.7
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 9.4e-30 134.0 164 52.4
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 9.4e-30 134.0 168 46.4
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 2.1e-29 132.9 175 45.7
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 2.7e-29 132.5 169 45.6
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 6.1e-29 131.3 165 46.7
Ca_06470_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 1.8e-28 129.8 162 47.5
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 1.8e-28 129.8 164 47.0
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 5.2e-28 128.3 160 48.8
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 6.8e-28 127.9 150 48.0
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 8.8e-28 127.5 161 50.9
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 8.8e-28 127.5 151 49.0
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 8.8e-28 127.5 168 46.4
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 2.0e-27 126.3 170 48.8
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 2.0e-27 126.3 150 48.0
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 3.4e-27 125.6 169 46.2
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 3.4e-27 125.6 168 46.4
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 3.4e-27 125.6 161 47.8
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 3.4e-27 125.6 165 47.9
arahy.Tifrunner.gnm1.ann1.98W4LT Arachis hypogaea HOM05D003405 ORTHO05D003920 4.4e-27 125.2 160 50.6
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 4.4e-27 125.2 164 48.2
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 1.3e-26 123.6 170 47.6
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 2.2e-26 122.9 157 46.5
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 2.2e-26 122.9 151 49.0
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 2.8e-26 122.5 167 43.7
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 3.7e-26 122.1 174 44.3
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 3.7e-26 122.1 154 45.5
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 8.3e-26 120.9 187 40.6
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 1.1e-25 120.6 168 43.5
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 1.4e-25 120.2 167 44.3
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 1.8e-25 119.8 167 43.7
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 2.4e-25 119.4 163 44.8
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 3.1e-25 119.0 165 46.1
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 4.1e-25 118.6 143 52.4
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 5.4e-25 118.2 168 44.0
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 7.0e-25 117.9 167 43.7
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 7.0e-25 117.9 168 43.5
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 7.0e-25 117.9 168 44.6
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 1.2e-24 117.1 169 43.2
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 1.6e-24 116.7 174 41.4
Medtr5g097870 Medicago truncatula HOM05D003405 ORTHO05D003920 1.6e-24 116.7 162 45.1
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 2.0e-24 116.3 160 46.2
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 2.0e-24 116.3 163 44.2
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 2.7e-24 115.9 168 41.1
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 2.7e-24 115.9 160 46.2
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 2.7e-24 115.9 170 43.5
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 3.5e-24 115.5 161 47.8
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 4.5e-24 115.2 165 43.6
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 1.7e-23 113.2 170 41.8
TPR.G15067 Trifolium pratense HOM05D003405 ORTHO05D003920 2.9e-23 112.5 162 42.6
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 6.5e-23 111.3 188 41.0
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 6.5e-23 111.3 188 41.0
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 6.5e-23 111.3 201 38.8
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 8.5e-23 110.9 168 41.7
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 8.5e-23 110.9 168 41.7
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 2.5e-22 109.4 166 44.0
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 4.2e-22 108.6 168 41.7
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 4.2e-22 108.6 171 41.5
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 9.5e-22 107.5 170 41.2
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 9.5e-22 107.5 159 44.7
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 6.1e-21 104.8 173 40.5
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 6.1e-21 104.8 230 35.7
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 1.0e-20 104.0 175 39.4
Sp7g33160 Schrenkiella parvula HOM05D003405 ORTHO05D003920 5.2e-20 101.7 150 40.7
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 6.8e-20 101.3 209 36.8
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 1.2e-19 100.5 163 39.9
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 4.4e-19 98.6 150 48.0
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 4.4e-19 98.6 171 38.0
HanXRQChr13g0411651 Helianthus annuus HOM05D003405 ORTHO05D003920 3.7e-18 95.5 104 51.0
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 4.9e-18 95.1 129 44.2
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 1.1e-17 94.0 177 38.4
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 1.1e-17 94.0 130 49.2
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.4e-17 93.6 129 43.4
CARHR243680 Cardamine hirsuta HOM05D003405 ORTHO05D003920 1.4e-17 93.6 167 35.9
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 2.4e-17 92.8 161 38.5
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 3.1e-17 92.4 106 46.2
Psat2g004000 Pisum sativum HOM05D003405 ORTHO05D003920 7.0e-17 91.3 129 43.4
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 9.2e-17 90.9 123 49.6
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 9.2e-17 90.9 171 39.2
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 1.2e-16 90.5 178 34.3
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 1.2e-16 90.5 160 37.5
BraA08t33398Z Brassica rapa HOM05D003405 ORTHO05D003920 3.5e-16 89.0 165 36.4
Hma1.2p1_0083F.1_g042700 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 3.5e-16 89.0 59 71.2
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 4.5e-16 88.6 152 39.5
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 4.5e-16 88.6 112 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 1.0e-15 87.4 170 35.3
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 2.3e-15 86.3 161 37.3
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 2.3e-15 86.3 161 37.3
Lalb_Chr17g0349241 Lupinus albus HOM05D003405 ORTHO05D003920 3.8e-15 85.5 164 37.2
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 5.0e-15 85.1 119 48.7
Dinv40394 Davidia involucrata HOM05D003405 ORTHO05D003920 6.6e-15 84.7 52 76.9
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 1.5e-14 83.6 123 48.8
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 1.5e-14 83.6 103 46.6
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 5.6e-14 81.6 142 40.1
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 5.6e-14 81.6 163 36.8
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 5.6e-14 81.6 163 36.8
FAN26G2328 Fragaria x ananassa HOM05D003405 ORTHO05D003920 5.6e-14 81.6 186 37.1
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.6e-13 80.1 120 42.5
VMungo0540G1594 Vigna mungo HOM05D003405 ORTHO05D003920 3.6e-13 79.0 137 38.7
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 4.7e-13 78.6 127 40.9
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 2.3e-12 76.3 163 35.6
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 5.2e-12 75.1 116 41.4
BcaC06g30604 Brassica carinata HOM05D003405 ORTHO05D003920 6.8e-12 74.7 58 56.9
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 2.0e-11 73.2 163 35.0
Os01g0924300 Oryza sativa ssp. japonica HOM05D003405 ORTHO05D003920 5.7e-11 71.6 169 30.8
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 9.8e-11 70.9 165 35.8
BcaNung00601 Brassica carinata HOM05D003405 ORTHO05D003920 9.8e-11 70.9 160 30.6
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 2.2e-10 69.7 171 29.8
AT4G35370 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 3.7e-10 68.9 150 35.3
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 3.7e-10 68.9 188 30.3
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 3.7e-10 68.9 188 30.3
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 2.4e-09 66.2 147 32.7
Atru.chr1.1032 Acer truncatum HOM05D003405 ORTHO05D003920 3.2e-09 65.9 85 50.6
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.7e-08 62.8 124 37.1
arahy.Tifrunner.gnm1.ann1.555Q75 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.0e-07 60.8 76 47.4
Carub.0003s3263 Capsella rubella HOM05D003405 ORTHO05D003920 1.0e-07 60.8 59 49.2
FAN28G2580 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.1e-06 57.4 120 38.3
AT4G18900 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 9.5e-06 54.3 135 34.1


User provided reference genes

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