Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024046 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 4.3e-37 157.5 83 100.0
CSS0047418 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 4.3e-37 157.5 83 100.0
CSS0005582 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 9.7e-37 156.4 83 98.8
CSS0018288 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.7e-36 155.6 83 98.8
CSS0024402 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 1.7e-36 155.6 83 98.8
Actinidia26509 Actinidia chinensis HOM05D000045 ORTHO05D000611 1.1e-21 106.3 68 80.9
Dinv22745 Davidia involucrata HOM05D000045 ORTHO05D000611 2.0e-21 105.5 67 83.6
Dinv44181 Davidia involucrata HOM05D000951 ORTHO05D000611 4.4e-21 104.4 67 82.1
QL10p050105 Quercus lobata HOM05D000045 ORTHO05D000611 4.4e-21 104.4 63 82.5
CSS0002913 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 7.5e-21 103.6 67 82.1
QL01p055428 Quercus lobata HOM05D000045 ORTHO05D000611 7.5e-21 103.6 74 74.3
CiPaw.01G098600 Carya illinoinensis HOM05D000045 ORTHO05D000611 1.3e-20 102.8 60 88.3
Rhsim02G0081200 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.3e-20 102.8 67 76.1
Rhsim09G0025400 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.3e-20 102.8 60 88.3
Rhsim09G0025600 Rhododendron simsii HOM05D000045 ORTHO05D000611 1.3e-20 102.8 60 88.3
Cfa015175 Carpinus fangiana HOM05D000045 ORTHO05D000611 1.7e-20 102.4 69 78.3
vmacro00647 Vaccinium macrocarpon HOM05D000045 ORTHO05D000611 1.7e-20 102.4 60 86.7
Lj6C18G7 Lonicera japonica HOM05D000045 ORTHO05D000611 4.8e-20 100.9 67 79.1
QL01p055274 Quercus lobata HOM05D000045 ORTHO05D000611 4.8e-20 100.9 75 72.0
VMungo1080G1719 Vigna mungo HOM05D000045 ORTHO05D000611 4.8e-20 100.9 60 85.0
Manes.02G080200 Manihot esculenta HOM05D000045 ORTHO05D000611 8.2e-20 100.1 60 86.7
RcHm_v2.0_Chr4g0406521 Rosa chinensis HOM05D000045 ORTHO05D000611 8.2e-20 100.1 60 83.3
EL10Ac3g05972 Beta vulgaris HOM05D000045 ORTHO05D000611 1.1e-19 99.8 67 77.6
GSVIVG01010788001 Vitis vinifera HOM05D000045 ORTHO05D000611 1.1e-19 99.8 67 77.6
Duzib175G0006 Durio zibethinus HOM05D000045 ORTHO05D000611 1.4e-19 99.4 60 85.0
Oeu061600.1 Olea europaea HOM05D000045 ORTHO05D000611 1.4e-19 99.4 67 77.6
MSTRG.12915 Avicennia marina HOM05D000045 ORTHO05D000611 1.8e-19 99.0 66 75.8
Potri.007G129500 Populus trichocarpa HOM05D000045 ORTHO05D000611 1.8e-19 99.0 60 83.3
AUR62023864 Chenopodium quinoa HOM05D000045 ORTHO05D000611 2.4e-19 98.6 67 79.1
FvH4_4g10891 Fragaria vesca HOM05D000045 ORTHO05D000611 2.4e-19 98.6 60 81.7
Gohir.A02G093800 Gossypium hirsutum HOM05D000045 ORTHO05D000611 2.4e-19 98.6 60 85.0
Gohir.D02G111700 Gossypium hirsutum HOM05D000045 ORTHO05D000611 2.4e-19 98.6 60 85.0
Manes.01G122100 Manihot esculenta HOM05D000045 ORTHO05D000611 3.1e-19 98.2 66 77.3
Peaxi162Scf00180g01013 Petunia axillaris HOM05D000045 ORTHO05D000611 3.1e-19 98.2 67 76.1
Duzib151G0989 Durio zibethinus HOM05D000045 ORTHO05D000611 4.1e-19 97.8 59 84.7
Cc07_g21260 Coffea canephora HOM05D000045 ORTHO05D000611 5.3e-19 97.4 66 75.8
MD13G1272500 Malus domestica HOM05D000045 ORTHO05D000611 5.3e-19 97.4 60 81.7
Phvul.005G153200 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 5.3e-19 97.4 60 81.7
Prupe.1G196400 Prunus persica HOM05D000045 ORTHO05D000611 5.3e-19 97.4 60 81.7
CANSAT78G0326 Cannabis sativa HOM05D000045 ORTHO05D000611 7.0e-19 97.1 60 81.7
ECA248G2697 Erigeron canadensis HOM05D000045 ORTHO05D000611 7.0e-19 97.1 66 75.8
MD04G1042200 Malus domestica HOM05D000045 ORTHO05D000611 7.0e-19 97.1 59 83.1
SGA_v2.0_scaffold9G04927 Striga asiatica HOM05D000045 ORTHO05D000611 7.0e-19 97.1 66 75.8
Thecc.04G177400 Theobroma cacao HOM05D000045 ORTHO05D000611 7.0e-19 97.1 60 83.3
Actinidia34597 Actinidia chinensis HOM05D000045 ORTHO05D000611 1.2e-18 96.3 58 84.5
Glyma.15G029900 Glycine max HOM05D000045 ORTHO05D000611 1.6e-18 95.9 60 81.7
HanXRQChr01g0024051 Helianthus annuus HOM05D000045 ORTHO05D000611 1.6e-18 95.9 66 74.2
Solyc06g073200.4 Solanum lycopersicum HOM05D000045 ORTHO05D000611 1.6e-18 95.9 67 73.1
Sopen06g029570 Solanum pennellii HOM05D000045 ORTHO05D000611 1.6e-18 95.9 67 73.1
Migut.H01929 Erythranthe guttata HOM05D000045 ORTHO05D000611 2.0e-18 95.5 67 71.6
Lalb_Chr14g0372481 Lupinus albus HOM05D000045 ORTHO05D000611 2.0e-18 95.5 68 72.1
TWI15G0966 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 2.0e-18 95.5 60 81.7
COL.COLO4_16173 Corchorus olitorius HOM05D000045 ORTHO05D000611 4.5e-18 94.4 60 81.7
HanXRQChr09g0257921 Helianthus annuus HOM05D000045 ORTHO05D000611 4.5e-18 94.4 66 75.8
Lj3g0027245 Lotus japonicus HOM05D000045 ORTHO05D000611 4.5e-18 94.4 61 77.0
Phvul.011G054000 Phaseolus vulgaris HOM05D000045 ORTHO05D000611 5.9e-18 94.0 60 78.3
Sed0016717 Sechium edule HOM05D000045 ORTHO05D000611 5.9e-18 94.0 60 80.0
Sc25g0002490 Simmondsia chinensis HOM05D000045 ORTHO05D000611 5.9e-18 94.0 67 74.6
Cpa.g.sc195.42 Carica papaya HOM05D000045 ORTHO05D000611 7.7e-18 93.6 59 79.7
Lalb_Chr22g0352111 Lupinus albus HOM05D000045 ORTHO05D000611 7.7e-18 93.6 60 76.7
CiPaw.02G054200 Carya illinoinensis HOM05D000045 ORTHO05D000611 1.0e-17 93.2 60 81.7
Hund11928 Selenicereus undatus HOM05D000045 ORTHO05D000611 1.0e-17 93.2 66 71.2
Sabra17G0017700 Salix brachista HOM05D000045 ORTHO05D000611 1.3e-17 92.8 59 81.4
MELO3C032619.2 Cucumis melo HOM05D000045 ORTHO05D000611 1.7e-17 92.4 60 78.3
CsaV3_4G003760 Cucumis sativus L. HOM05D000045 ORTHO05D000611 1.7e-17 92.4 60 78.3
Lalb_Chr03g0026091 Lupinus albus HOM05D000045 ORTHO05D000611 1.7e-17 92.4 60 76.7
Ah.07g202110 Amaranthus hybridus HOM05D000045 ORTHO05D000611 2.2e-17 92.0 67 73.1
ClCG07G016630 Citrullus lanatus HOM05D000045 ORTHO05D000611 2.2e-17 92.0 60 78.3
Lj2g0026742 Lotus japonicus HOM05D000045 ORTHO05D000611 2.2e-17 92.0 60 75.0
Potri.017G029100 Populus trichocarpa HOM05D000045 ORTHO05D000611 2.9e-17 91.7 60 80.0
Sabra07G0105400 Salix brachista HOM05D003336 ORTHO05D000611 3.8e-17 91.3 60 78.3
TWI63G1472 Tripterygium wilfordii HOM05D000045 ORTHO05D000611 5.0e-17 90.9 60 76.7
PGR083G1974 Punica granatum HOM05D000045 ORTHO05D000611 6.5e-17 90.5 59 76.3
arahy.Tifrunner.gnm1.ann1.NRKY30 Arachis hypogaea HOM05D000045 ORTHO05D000611 3.2e-16 88.2 59 72.9
arahy.Tifrunner.gnm1.ann1.VV1Q05 Arachis hypogaea HOM05D000045 ORTHO05D000611 3.2e-16 88.2 59 72.9
AUR62002320 Chenopodium quinoa HOM05D000045 ORTHO05D000611 4.2e-16 87.8 52 84.6
Ca_20791_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 4.2e-16 87.8 60 75.0
Psat7g209880 Pisum sativum HOM05D000045 ORTHO05D000611 5.5e-16 87.4 62 72.6
arahy.Tifrunner.gnm1.ann1.6XY8VG Arachis hypogaea HOM05D000045 ORTHO05D000611 7.2e-16 87.0 60 75.0
arahy.Tifrunner.gnm1.ann1.TJH45E Arachis hypogaea HOM05D000045 ORTHO05D000611 7.2e-16 87.0 60 75.0
Glyma.12G052000 Glycine max HOM05D000045 ORTHO05D000611 7.2e-16 87.0 59 74.6
Nitab4.5_0011171g0010 Nicotiana tabacum HOM05D000045 ORTHO05D000611 7.2e-16 87.0 69 69.6
arahy.Tifrunner.gnm1.ann1.VJP601 Arachis hypogaea HOM05D000045 ORTHO05D000611 9.4e-16 86.7 60 75.0
A07p24660 Brassica napus HOM05D000045 ORTHO05D000611 1.2e-15 86.3 67 62.7
BraA07t30111Z Brassica rapa HOM05D000045 ORTHO05D000611 1.2e-15 86.3 67 62.7
Carub.0005s2620 Capsella rubella HOM05D000045 ORTHO05D000611 1.2e-15 86.3 68 64.7
Gohir.A02G012400 Gossypium hirsutum HOM05D000045 ORTHO05D000611 1.2e-15 86.3 64 67.2
Aa31LG10G13790 Aethionema arabicum HOM05D000045 ORTHO05D000611 2.7e-15 85.1 67 62.7
AL5G41380 Arabidopsis lyrata HOM05D000045 ORTHO05D000611 2.7e-15 85.1 67 64.2
AT3G59470 Arabidopsis thaliana HOM05D000045 ORTHO05D000611 2.7e-15 85.1 67 64.2
BcaC08g44991 Brassica carinata HOM05D000045 ORTHO05D000611 2.7e-15 85.1 68 60.3
C06p26200 Brassica napus HOM05D000045 ORTHO05D000611 2.7e-15 85.1 67 61.2
BolC6t37783H Brassica oleracea HOM05D000045 ORTHO05D000611 2.7e-15 85.1 67 61.2
CAN.G65.165 Capsicum annuum HOM05D000004 ORTHO05D000611 2.7e-15 85.1 56 78.6
CARHR169850 Cardamine hirsuta HOM05D000045 ORTHO05D000611 2.7e-15 85.1 67 64.2
Nitab4.5_0004983g0030 Nicotiana tabacum HOM05D000045 ORTHO05D000611 2.7e-15 85.1 56 78.6
arahy.Tifrunner.gnm1.ann1.YIT1R5 Arachis hypogaea HOM05D000045 ORTHO05D000611 3.6e-15 84.7 61 67.2
BraA09t40609Z Brassica rapa HOM05D000045 ORTHO05D000611 3.6e-15 84.7 67 62.7
Medtr4g067290 Medicago truncatula HOM05D000045 ORTHO05D000611 3.6e-15 84.7 62 69.4
Sp5g03690 Schrenkiella parvula HOM05D000045 ORTHO05D000611 3.6e-15 84.7 67 62.7
BcaB02g07464 Brassica carinata HOM05D000045 ORTHO05D000611 4.7e-15 84.3 67 61.2
Glyma.11G127400 Glycine max HOM05D000045 ORTHO05D000611 4.7e-15 84.3 59 72.9
A09p51730 Brassica napus HOM05D000045 ORTHO05D000611 6.1e-15 84.0 59 69.5
TPR.G34188 Trifolium pratense HOM05D000045 ORTHO05D000611 6.1e-15 84.0 62 69.4
BcaC07g40474 Brassica carinata HOM05D000045 ORTHO05D000611 8.0e-15 83.6 67 61.2
BcaNung05946 Brassica carinata HOM05D000045 ORTHO05D000611 8.0e-15 83.6 67 61.2
C08p34460 Brassica napus HOM05D000045 ORTHO05D000611 8.0e-15 83.6 67 61.2
BolC8t51047H Brassica oleracea HOM05D000045 ORTHO05D000611 8.0e-15 83.6 67 61.2
SHI23520 Sapria himalayana HOM05D000045 ORTHO05D000611 8.0e-15 83.6 60 68.3
arahy.Tifrunner.gnm1.ann1.SFNX64 Arachis hypogaea HOM05D000045 ORTHO05D000611 1.0e-14 83.2 59 67.8
Ca_01256_v3 Cicer arietinum L. HOM05D000045 ORTHO05D000611 1.4e-14 82.8 57 70.2
Nn1g09610 Nelumbo nucifera HOM05D000045 ORTHO05D000611 1.4e-14 82.8 67 59.7
Thhalv10006173m.g Eutrema salsugineum HOM05D000045 ORTHO05D000611 1.8e-14 82.4 67 59.7
Gorai.005G016700 Gossypium raimondii HOM05D000045 ORTHO05D000611 2.3e-14 82.0 58 74.1
TAR636G0033 Trochodendron aralioides HOM05D000045 ORTHO05D000611 3.0e-14 81.6 60 65.0
arahy.Tifrunner.gnm1.ann1.ZSYR8D Arachis hypogaea HOM05D000045 ORTHO05D000611 5.2e-14 80.9 59 66.1
Duzib268G1533 Durio zibethinus HOM05D000045 ORTHO05D000611 5.2e-14 80.9 58 74.1
Atru.chr4.1231 Acer truncatum HOM05D000045 ORTHO05D000611 6.8e-14 80.5 60 66.7
Gohir.D02G013200 Gossypium hirsutum HOM05D000045 ORTHO05D000611 6.8e-14 80.5 58 72.4
Medtr2g098920 Medicago truncatula HOM05D000045 ORTHO05D000611 8.8e-14 80.1 57 68.4
Sed0015975 Sechium edule HOM05D000045 ORTHO05D000611 8.8e-14 80.1 60 66.7
TPR.G18844 Trifolium pratense HOM05D000045 ORTHO05D000611 2.2e-12 75.5 57 61.4
Oeu020500.1 Olea europaea HOM05D000045 ORTHO05D000611 6.3e-12 73.9 73 57.5
arahy.Tifrunner.gnm1.ann1.R6QTEJ Arachis hypogaea HOM05D000045 ORTHO05D000611 3.1e-11 71.6 59 62.7
Migut.J01148 Erythranthe guttata HOM05D000045 ORTHO05D000611 3.5e-10 68.2 66 59.1
SGA_v2.0_scaffold148G36396 Striga asiatica HOM05D000045 ORTHO05D000611 5.9e-10 67.4 66 60.6
Thecc.05G188100 Theobroma cacao HOM05D000045 ORTHO05D000611 1.7e-09 65.9 65 50.8
Prupe.6G364200 Prunus persica HOM05D000045 ORTHO05D000611 2.9e-09 65.1 59 50.8
SalBow6G6829 Salvia bowleyana HOM05D000045 ORTHO05D000611 2.9e-09 65.1 89 49.4
MSTRG.19576 Avicennia marina HOM05D000045 ORTHO05D000611 8.5e-09 63.5 67 55.2
RcHm_v2.0_Chr3g0447511 Rosa chinensis HOM05D000045 ORTHO05D000611 8.5e-09 63.5 66 45.5
Prupe.6G364300 Prunus persica HOM05D000045 ORTHO05D000611 9.4e-08 60.1 66 42.4
CiPaw.07G083500 Carya illinoinensis HOM05D000045 ORTHO05D000611 1.2e-07 59.7 57 45.6
MD04G1247800 Malus domestica HOM05D000045 ORTHO05D000611 1.2e-07 59.7 66 43.9
MD12G1262700 Malus domestica HOM05D000045 ORTHO05D000611 2.1e-07 58.9 66 42.4
Nn1g09616 Nelumbo nucifera HOM05D000045 ORTHO05D000611 2.1e-07 58.9 74 41.9
FvH4_6g00151 Fragaria vesca HOM05D000045 ORTHO05D000611 2.7e-07 58.5 66 40.9
Prupe.8G188300 Prunus persica HOM05D000045 ORTHO05D000611 4.7e-07 57.8 54 53.7
Rhsim09G0026800 Rhododendron simsii HOM05D000045 ORTHO05D000611 4.7e-07 57.8 56 48.2
RhsimUnG0195800 Rhododendron simsii HOM05D000045 ORTHO05D000611 4.7e-07 57.8 56 48.2
TAR633G1868 Trochodendron aralioides HOM05D000045 ORTHO05D000611 4.7e-07 57.8 82 45.1
Hma1.2p1_4193F.1_g338430 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 6.1e-07 57.4 63 44.4
MD05G1155500 Malus domestica HOM05D000045 ORTHO05D000611 6.1e-07 57.4 54 53.7
TAR362G0617 Trochodendron aralioides HOM05D000045 ORTHO05D000611 6.1e-07 57.4 65 49.2
MD10G1149900 Malus domestica HOM05D000045 ORTHO05D000611 8.0e-07 57.0 65 47.7
Hma1.2p1_1539F.1_g289640 Hydrangea macrophylla HOM05D000045 ORTHO05D000611 1.0e-06 56.6 63 42.9
Nn7g36622 Nelumbo nucifera HOM05D000045 ORTHO05D000611 1.0e-06 56.6 75 42.7
GSVIVG01001896001 Vitis vinifera HOM05D000045 ORTHO05D000611 1.0e-06 56.6 55 52.7
Prupe.1G195800 Prunus persica HOM05D000045 ORTHO05D000611 1.4e-06 56.2 63 46.0
QL01p047769 Quercus lobata HOM05D000045 ORTHO05D000611 1.4e-06 56.2 76 38.2
TAR636G2452 Trochodendron aralioides HOM05D000045 ORTHO05D000611 1.4e-06 56.2 62 46.8
GSVIVG01010762001 Vitis vinifera HOM05D000045 ORTHO05D000611 1.4e-06 56.2 69 44.9
Cpa.g.sc9.289 Carica papaya HOM05D000045 ORTHO05D000611 1.8e-06 55.8 63 44.4
RcHm_v2.0_Chr3g0447521 Rosa chinensis HOM05D000045 ORTHO05D000611 1.8e-06 55.8 61 41.0
CiPaw.01G099400 Carya illinoinensis HOM05D000045 ORTHO05D000611 2.3e-06 55.5 63 42.9
MD05G1156200 Malus domestica HOM05D000045 ORTHO05D000611 2.3e-06 55.5 54 51.9
Potri.007G128900 Populus trichocarpa HOM05D000045 ORTHO05D000611 2.3e-06 55.5 55 50.9
COL.COLO4_07043 Corchorus olitorius HOM05D000045 ORTHO05D000611 3.0e-06 55.1 55 50.9
FAN15G1153 Fragaria x ananassa HOM05D000045 ORTHO05D000611 3.0e-06 55.1 60 48.3
Potri.008G076800 Populus trichocarpa HOM05D000045 ORTHO05D000611 3.0e-06 55.1 54 48.1
Thecc.01G209100 Theobroma cacao HOM05D000045 ORTHO05D000611 3.0e-06 55.1 54 51.9
Lj3C186T3 Lonicera japonica HOM05D000045 ORTHO05D000611 4.0e-06 54.7 63 41.3
RcHm_v2.0_Chr6g0282551 Rosa chinensis HOM05D000045 ORTHO05D000611 4.0e-06 54.7 54 51.9
arahy.Tifrunner.gnm1.ann1.JNZ5XH Arachis hypogaea HOM05D000045 ORTHO05D000611 5.2e-06 54.3 59 57.6
CSS0016444 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 5.2e-06 54.3 61 42.6
CSS0017326 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000611 5.2e-06 54.3 61 42.6
Duzib268G1506 Durio zibethinus HOM05D000045 ORTHO05D000611 5.2e-06 54.3 61 45.9
Manes.13G055700 Manihot esculenta HOM05D000045 ORTHO05D000611 5.2e-06 54.3 54 51.9
Duzib138G0278 Durio zibethinus HOM05D000045 ORTHO05D000611 6.8e-06 53.9 54 50.0
Atru.chr4.1194 Acer truncatum HOM05D000045 ORTHO05D000611 8.8e-06 53.5 56 51.8
Duzib133G0982 Durio zibethinus HOM05D000045 ORTHO05D000611 8.8e-06 53.5 55 49.1
FvH4_2g17601 Fragaria vesca HOM05D000045 ORTHO05D000611 8.8e-06 53.5 65 46.2
FvH4_6g00152 Fragaria vesca HOM05D000045 ORTHO05D000611 8.8e-06 53.5 61 39.3
Manes.04G043300 Manihot esculenta HOM05D000045 ORTHO05D000611 8.8e-06 53.5 55 50.9
Potri.014G176500 Populus trichocarpa HOM05D000045 ORTHO05D000611 8.8e-06 53.5 54 50.0
Sabra14G0135100 Salix brachista HOM05D000045 ORTHO05D000611 8.8e-06 53.5 54 50.0


User provided reference genes

Program Settings