Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 2.8e-110 402.9 394 100.0
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 2.6e-87 326.6 386 63.0
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 8.6e-83 311.6 394 63.2
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 5.7e-79 298.9 389 78.9
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 6.3e-78 295.4 386 84.5
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 5.4e-77 292.4 413 82.6
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 4.5e-76 289.3 388 80.9
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 7.8e-76 288.5 393 83.7
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 1.5e-74 284.3 387 84.5
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 1.6e-73 280.8 394 82.0
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 2.1e-73 280.4 391 83.6
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 4.7e-73 279.3 386 82.9
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 3.0e-72 276.6 395 81.8
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 1.5e-71 274.2 385 77.4
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 2.0e-71 273.9 393 76.6
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 4.4e-71 272.7 383 52.2
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 1.2e-68 264.6 392 76.0
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 7.8e-68 261.9 393 74.8
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 7.8e-68 261.9 391 76.2
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 3.0e-67 260.0 394 74.6
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 3.0e-67 260.0 392 75.3
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 3.0e-67 260.0 392 66.8
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 5.0e-67 259.2 390 54.1
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 8.6e-67 258.5 391 46.5
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 7.3e-66 255.4 390 81.3
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 2.1e-65 253.8 396 80.8
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 1.8e-64 250.8 482 70.1
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 2.3e-64 250.4 391 73.9
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 5.2e-64 249.2 390 81.3
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 8.9e-64 248.4 393 72.3
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 8.9e-64 248.4 393 66.7
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 1.5e-63 247.7 388 71.6
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.4e-63 246.5 388 75.5
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.4e-63 246.5 390 81.3
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 4.4e-63 246.1 388 75.8
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 4.4e-63 246.1 388 75.8
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 4.4e-63 246.1 388 75.8
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 1.3e-62 244.6 390 68.5
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 1.3e-62 244.6 383 55.9
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 1.7e-62 244.2 381 70.6
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 1.7e-62 244.2 393 74.0
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 2.2e-62 243.8 390 75.4
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 2.2e-62 243.8 396 61.6
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 4.9e-62 242.7 395 73.7
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 1.4e-61 241.1 394 70.1
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 5.4e-61 239.2 391 47.6
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 5.4e-61 239.2 388 74.7
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 9.2e-61 238.4 408 68.1
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 9.2e-61 238.4 388 61.1
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 1.2e-60 238.0 403 66.7
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 1.2e-60 238.0 388 52.3
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 1.2e-60 238.0 388 56.4
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 1.6e-60 237.7 383 71.5
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 1.6e-60 237.7 392 73.2
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 2.1e-60 237.3 391 44.2
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 2.1e-60 237.3 391 79.8
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 3.5e-60 236.5 376 47.3
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 4.6e-60 236.1 392 75.0
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 4.6e-60 236.1 348 53.2
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 4.6e-60 236.1 387 73.4
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 2.3e-59 233.8 345 86.1
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 3.9e-59 233.0 398 63.1
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 5.0e-59 232.6 435 65.3
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 1.1e-58 231.5 396 77.8
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 1.5e-58 231.1 391 43.5
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 3.3e-58 229.9 391 65.5
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 3.3e-58 229.9 402 68.4
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 3.3e-58 229.9 397 71.3
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 3.3e-58 229.9 338 85.2
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 6.2e-57 225.7 422 62.3
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 6.2e-57 225.7 360 76.7
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 8.1e-57 225.3 395 62.3
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 1.1e-56 224.9 392 76.5
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 1.4e-56 224.6 389 67.4
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 1.8e-56 224.2 412 51.2
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.8e-56 224.2 394 66.8
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.8e-56 224.2 394 66.8
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 2.3e-56 223.8 385 67.5
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 2.3e-56 223.8 412 59.7
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 3.1e-56 223.4 391 43.7
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 4.0e-56 223.0 343 55.4
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 8.9e-56 221.9 387 71.3
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.5e-55 221.1 397 68.8
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 2.0e-55 220.7 397 67.5
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 2.6e-55 220.3 397 70.5
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 3.4e-55 219.9 393 61.8
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 3.4e-55 219.9 397 71.3
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 4.4e-55 219.5 426 45.5
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 7.5e-55 218.8 426 58.9
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 1.3e-54 218.0 397 76.8
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 1.7e-54 217.6 397 70.8
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 2.9e-54 216.9 403 65.8
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 2.4e-53 213.8 392 43.4
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 3.2e-53 213.4 385 66.8
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 5.4e-53 212.6 392 43.1
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 9.2e-53 211.8 309 82.8
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 1.6e-52 211.1 397 76.3
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 6.0e-52 209.1 392 47.4
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 1.3e-51 208.0 398 55.0
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 1.7e-51 207.6 341 80.1
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 3.9e-51 206.5 390 45.4
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 3.9e-51 206.5 390 45.1
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.1e-50 204.9 370 38.4
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 5.6e-50 202.6 394 64.5
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 5.2e-48 196.1 379 35.6
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 6.8e-48 195.7 328 50.0
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 3.4e-47 193.4 382 60.7
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 9.9e-47 191.8 392 56.1
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 2.2e-46 190.7 401 41.1
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 6.4e-46 189.1 388 68.8
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 1.1e-45 188.3 278 87.8
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 1.9e-45 187.6 400 40.8
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 3.2e-45 186.8 392 68.6
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 7.1e-45 185.7 401 64.1
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 7.1e-45 185.7 391 66.0
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 2.1e-44 184.1 343 67.1
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 4.6e-44 183.0 389 41.1
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 2.3e-43 180.6 109 81.7
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 3.9e-43 179.9 390 47.9
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 5.1e-43 179.5 402 41.3
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 1.9e-42 177.6 275 84.7
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 3.3e-42 176.8 398 32.7
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 5.6e-42 176.0 100 84.0
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.8e-41 173.7 361 39.6
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 8.1e-41 172.2 411 36.5
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 1.5e-39 167.9 312 59.6
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 4.4e-39 166.4 115 72.2
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 7.6e-39 165.6 111 73.0
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 9.9e-39 165.2 344 70.9
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 1.1e-37 161.8 111 72.1
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 3.2e-37 160.2 409 57.7
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 2.7e-36 157.1 104 76.0
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 4.6e-36 156.4 280 76.1
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 6.0e-36 156.0 393 62.3
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 1.0e-35 155.2 488 53.1
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 7.3e-34 149.1 112 67.9
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 3.6e-33 146.7 396 30.3
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 1.1e-32 145.2 330 38.2
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.1e-32 145.2 412 42.5
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 3.1e-32 143.7 337 41.2
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 4.0e-32 143.3 107 65.4
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 5.3e-32 142.9 106 67.9
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 4.5e-31 139.8 401 58.1
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 2.9e-30 137.1 408 57.4
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 7.1e-29 132.5 289 33.9
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 2.1e-28 131.0 376 29.0
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 2.5e-26 124.0 174 40.8
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.3e-25 121.7 343 28.0
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 2.1e-25 120.9 397 32.7
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 3.7e-25 120.2 384 28.1
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 2.4e-24 117.5 113 55.8
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 4.5e-23 113.2 124 48.4
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 9.9e-23 112.1 397 39.0
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 1.3e-22 111.7 60 86.7
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 7.4e-18 95.9 55 80.0
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 7.4e-18 95.9 120 45.0
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 1.6e-17 94.7 94 52.1
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 3.4e-15 87.0 61 68.9
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 5.8e-15 86.3 351 23.4
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 7.6e-15 85.9 126 36.5
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 1.7e-14 84.7 52 75.0
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 2.2e-14 84.3 53 73.6
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 8.4e-14 82.4 53 71.7
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 1.4e-13 81.6 105 43.8
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 4.2e-13 80.1 97 42.3
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 5.5e-13 79.7 397 57.7
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 2.1e-12 77.8 408 25.0
Glyma.17G173200 Glycine max HOM05D003913 ORTHO05D004803 2.1e-12 77.8 42 78.6
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 8.2e-09 65.9 126 28.6
Cpa.g.sc66.118 Carica papaya HOM05D003913 ORTHO05D004411 1.3e-06 58.5 28 82.1


User provided reference genes

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