Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 4.1e-40 167.5 80 100.0
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 4.1e-40 167.5 80 100.0
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.4e-11 72.8 79 50.6
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 3.0e-11 71.6 79 48.1
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 6.7e-11 70.5 78 48.7
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 8.8e-11 70.1 79 49.4
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.1e-10 69.7 95 43.2
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 1.5e-10 69.3 79 48.1
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 2.0e-10 68.9 79 49.4
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 2.0e-10 68.9 79 48.1
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 2.0e-10 68.9 79 48.1
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 2.6e-10 68.6 79 48.1
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 5.7e-10 67.4 79 45.6
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 5.7e-10 67.4 79 46.8
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 9.7e-10 66.6 80 48.8
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 9.7e-10 66.6 80 48.8
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 9.7e-10 66.6 80 48.8
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 9.7e-10 66.6 80 48.8
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 9.7e-10 66.6 79 46.8
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.3e-09 66.2 80 47.5
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 1.3e-09 66.2 79 46.8
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 1.3e-09 66.2 76 44.7
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.3e-09 66.2 80 43.8
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.7e-09 65.9 79 46.8
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 2.2e-09 65.5 79 45.6
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.2e-09 65.5 80 47.5
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 2.2e-09 65.5 79 45.6
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.8e-09 65.1 79 46.8
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 2.8e-09 65.1 80 45.0
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 2.8e-09 65.1 79 45.6
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 2.8e-09 65.1 79 46.8
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 2.8e-09 65.1 79 46.8
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 3.7e-09 64.7 79 45.6
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 4.8e-09 64.3 80 47.5
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 4.8e-09 64.3 80 47.5
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 8.2e-09 63.5 79 43.0
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 8.2e-09 63.5 78 47.4
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.2e-09 63.5 79 43.0
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.2e-09 63.5 79 43.0
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 8.2e-09 63.5 79 43.0
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 1.1e-08 63.2 80 43.8
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 1.4e-08 62.8 79 44.3
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 1.4e-08 62.8 79 44.3
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.8e-08 62.4 79 43.0
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 2.4e-08 62.0 80 48.8
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 2.4e-08 62.0 80 48.8
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 2.4e-08 62.0 80 48.8
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 2.4e-08 62.0 80 48.8
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 2.4e-08 62.0 80 48.8
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 2.4e-08 62.0 80 48.8
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 2.4e-08 62.0 80 48.8
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 2.4e-08 62.0 80 48.8
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 2.4e-08 62.0 80 48.8
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 2.4e-08 62.0 80 48.8
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.4e-08 62.0 79 45.6
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.4e-08 62.0 79 45.6
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 2.4e-08 62.0 79 45.6
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 3.1e-08 61.6 79 44.3
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 3.1e-08 61.6 79 43.0
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.1e-08 61.6 79 45.6
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 3.1e-08 61.6 79 40.5
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 3.1e-08 61.6 78 42.3
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 4.1e-08 61.2 79 48.1
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 4.1e-08 61.2 79 48.1
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 4.1e-08 61.2 79 48.1
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 4.1e-08 61.2 79 46.8
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 4.1e-08 61.2 79 48.1
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.1e-08 61.2 80 46.2
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 4.1e-08 61.2 78 46.2
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 4.1e-08 61.2 79 43.0
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.3e-08 60.8 79 45.6
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 7.0e-08 60.5 76 43.4
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 9.1e-08 60.1 75 44.0
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 1.2e-07 59.7 90 48.9
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 1.2e-07 59.7 80 45.0
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 1.6e-07 59.3 76 43.4
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.6e-07 59.3 79 43.0
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 2.7e-07 58.5 78 42.3
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 2.7e-07 58.5 80 43.8
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 3.5e-07 58.2 79 44.3
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 5.9e-07 57.4 80 42.5
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 7.7e-07 57.0 79 41.8
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 1.0e-06 56.6 74 41.9
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 1.0e-06 56.6 79 40.5
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 1.3e-06 56.2 79 40.5
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 1.3e-06 56.2 79 40.5
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 5.0e-06 54.3 80 41.2
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 5.0e-06 54.3 75 40.0
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 8.5e-06 53.5 78 39.7
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 8.5e-06 53.5 78 39.7
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 8.5e-06 53.5 78 39.7


User provided reference genes

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