Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 1.5e-225 785.8 390 100.0
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 8.8e-197 690.3 387 87.9
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.2e-193 679.9 390 86.9
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.9e-191 672.5 390 85.9
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 9.1e-186 653.7 390 82.8
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 8.5e-184 647.1 390 82.1
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 8.8e-181 637.1 390 80.3
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 7.2e-175 617.5 391 78.3
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 8.0e-174 614.0 391 78.5
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 9.7e-172 607.1 391 76.7
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 1.3e-171 606.7 391 75.2
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.9e-167 592.8 390 74.1
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 2.5e-167 592.4 390 74.4
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.2e-166 590.1 390 75.1
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 1.6e-166 589.7 390 74.9
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.6e-166 588.6 391 73.4
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 6.1e-166 587.8 387 74.9
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 8.0e-166 587.4 384 75.0
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 3.0e-165 585.5 390 73.6
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 5.2e-165 584.7 391 72.9
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 1.2e-164 583.6 391 75.2
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 2.6e-164 582.4 390 73.3
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.3e-163 580.1 390 74.6
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 6.3e-163 577.8 408 71.6
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 1.4e-162 576.6 408 71.8
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 5.4e-162 574.7 390 72.8
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 2.0e-161 572.8 408 70.3
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 7.7e-161 570.9 390 72.3
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 2.3e-160 569.3 390 71.8
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 8.6e-160 567.4 389 71.0
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.1e-159 567.0 392 73.5
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.5e-159 566.6 408 70.1
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 1.9e-159 566.2 391 74.2
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 2.5e-159 565.8 364 79.7
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 2.5e-159 565.8 372 73.9
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.3e-159 565.5 396 73.7
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 7.2e-159 564.3 392 74.0
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 9.5e-159 563.9 387 73.4
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.6e-158 563.1 392 71.4
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 3.6e-158 562.0 389 69.7
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.7e-158 561.6 392 73.0
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 8.0e-158 560.8 381 76.9
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 1.4e-157 560.1 386 72.5
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.8e-157 557.8 392 72.4
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 8.9e-157 557.4 392 72.2
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.5e-156 556.6 398 70.4
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 9.8e-156 553.9 390 70.8
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 1.7e-155 553.1 390 71.3
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 2.2e-155 552.7 414 68.8
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 2.8e-155 552.4 424 68.2
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 6.3e-155 551.2 388 71.4
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.1e-154 550.4 415 68.0
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 4.1e-154 548.5 393 69.0
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 5.4e-154 548.1 390 70.8
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 7.0e-154 547.7 374 72.7
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 9.2e-154 547.4 381 72.2
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 1.6e-153 546.6 390 70.5
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 7.8e-153 544.3 391 69.8
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 1.7e-152 543.1 390 71.0
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 6.6e-152 541.2 388 70.4
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 3.3e-151 538.9 393 69.2
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 7.3e-151 537.7 390 70.5
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.6e-150 536.6 400 67.8
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.6e-150 536.6 393 69.2
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 6.1e-150 534.6 390 69.7
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 1.4e-149 533.5 401 70.1
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 4.0e-149 531.9 377 70.8
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.5e-148 530.0 390 69.0
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 2.6e-148 529.3 390 69.0
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 9.8e-148 527.3 391 67.3
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.2e-145 520.4 390 69.0
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 4.6e-145 518.5 392 68.6
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 6.0e-145 518.1 389 68.9
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 7.8e-145 517.7 390 67.2
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 3.0e-144 515.8 366 70.5
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 5.0e-144 515.0 354 73.2
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 6.6e-144 514.6 368 68.8
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 3.3e-143 512.3 392 65.8
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 9.5e-143 510.8 392 65.3
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.2e-142 510.4 392 66.6
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 6.8e-141 504.6 392 66.6
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 5.8e-140 501.5 392 64.8
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 7.1e-138 494.6 386 65.5
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 7.8e-137 491.1 391 62.9
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 1.0e-136 490.7 391 63.2
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 3.9e-136 488.8 378 66.7
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.1e-135 487.3 391 62.4
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 1.5e-135 486.9 322 73.6
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 5.6e-135 485.0 392 62.2
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 1.6e-134 483.4 350 69.7
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 4.7e-134 481.9 391 62.7
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 4.7e-134 481.9 391 62.7
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 2.0e-132 476.5 418 59.6
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 3.7e-131 472.2 349 69.3
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 7.8e-129 464.5 336 68.5
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 9.6e-119 431.0 378 59.5
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 4.0e-117 425.6 342 61.1
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 7.1e-114 414.8 264 75.8
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 4.6e-105 385.6 252 73.8
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.1e-102 376.7 305 61.6
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 1.1e-98 364.4 385 52.5
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 7.9e-97 358.2 264 68.9
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.2e-90 336.3 325 56.3
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 3.9e-88 329.3 262 61.8
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 5.1e-88 328.9 202 77.7
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 6.3e-86 322.0 194 83.0
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 4.1e-85 319.3 190 78.4
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 1.4e-80 304.3 226 67.7
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 6.9e-77 292.0 164 84.8
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 2.0e-71 273.9 279 47.3
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 1.4e-64 251.1 187 63.6
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 4.0e-64 249.6 178 67.4
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.6e-60 237.7 131 85.5
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 2.2e-54 217.2 235 46.8
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 7.2e-50 202.2 212 48.1
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 6.8e-48 195.7 114 79.8
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.0e-47 194.1 188 54.8
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.6e-44 184.5 124 74.2
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 6.1e-41 172.6 168 57.1
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 4.0e-40 169.9 133 61.7
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 4.4e-39 166.4 133 60.9
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 5.7e-39 166.0 131 63.4
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 5.4e-37 159.5 200 45.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 3.5e-36 156.8 243 40.3
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 2.0e-31 141.0 182 46.2
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.7e-30 137.9 146 54.8
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 3.2e-29 133.7 84 73.8
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 2.5e-26 124.0 72 84.7
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.2e-25 121.7 113 53.1
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.6e-25 120.2 63 88.9
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 4.4e-23 113.2 75 69.3
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 1.7e-22 111.3 97 55.7
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 6.2e-17 92.8 93 59.1
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 3.2e-13 80.5 67 58.2
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 1.7e-11 74.7 46 80.4
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 4.3e-10 70.1 46 73.9
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 2.8e-09 67.4 104 39.4


User provided reference genes

Program Settings