Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1439.9 726 100.0
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 0.0e+00 1215.7 726 84.7
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 0.0e+00 1188.7 726 82.5
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1182.9 759 80.2
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 0.0e+00 1182.9 704 85.5
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 0.0e+00 1161.0 786 76.6
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 0.0e+00 1153.3 805 74.4
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 0.0e+00 1147.1 729 79.6
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1139.4 726 80.3
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 0.0e+00 1138.3 747 78.3
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 0.0e+00 1112.4 715 76.5
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 0.0e+00 1112.1 725 77.2
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 0.0e+00 1108.6 723 77.2
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 0.0e+00 1107.0 729 76.7
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 0.0e+00 1104.0 719 76.6
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 0.0e+00 1097.4 726 76.2
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 0.0e+00 1097.0 722 76.2
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 0.0e+00 1096.6 721 77.0
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 0.0e+00 1095.9 721 76.4
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 0.0e+00 1092.8 721 76.7
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 0.0e+00 1086.2 724 74.7
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 0.0e+00 1084.7 722 75.3
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 0.0e+00 1083.6 725 74.1
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 0.0e+00 1081.2 720 76.5
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 0.0e+00 1075.5 727 75.4
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 0.0e+00 1075.5 721 75.0
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 5.0e-312 1073.5 719 74.8
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 2.5e-311 1071.6 704 75.6
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 4.5e-311 1070.8 725 73.2
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 7.4e-311 1070.1 725 73.2
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 4.9e-310 1067.4 726 74.2
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 6.4e-310 1067.0 727 74.0
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 7.1e-309 1063.5 726 73.6
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.7e-308 1061.6 726 73.8
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 3.5e-308 1061.2 705 75.6
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.6e-308 1060.8 728 74.0
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 7.8e-308 1060.1 731 72.8
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 3.9e-307 1057.7 730 73.3
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 1.3e-305 1052.7 717 74.3
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 2.1e-305 1052.0 730 72.5
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 1.2e-303 1046.2 724 73.3
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 1.2e-303 1046.2 729 73.7
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 2.6e-303 1045.0 721 73.9
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.4e-301 1038.5 727 73.0
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 4.2e-301 1037.7 715 72.4
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 9.3e-301 1036.6 744 71.1
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 1.2e-300 1036.2 720 73.9
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.6e-300 1035.8 685 77.2
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 5.1e-299 1030.8 703 74.5
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 6.6e-299 1030.4 718 72.0
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 7.3e-298 1026.9 725 70.9
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 1.8e-296 1022.3 708 73.4
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 6.9e-296 1020.4 755 70.2
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 3.4e-295 1018.1 728 70.6
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 6.4e-294 1013.8 728 70.3
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 1.2e-292 1009.6 712 73.3
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 4.6e-292 1007.7 725 69.7
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 6.0e-292 1007.3 728 70.2
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.3e-291 1005.4 725 71.3
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 8.7e-291 1003.4 711 72.7
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.5e-290 1002.7 726 70.2
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 3.3e-290 1001.5 731 69.1
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 4.3e-290 1001.1 725 69.7
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 9.6e-290 1000.0 708 71.5
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.6e-289 999.2 721 72.0
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 2.8e-289 998.4 702 71.1
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 3.7e-289 998.0 716 69.1
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 4.8e-289 997.7 722 70.4
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 1.1e-288 996.5 716 70.3
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 2.4e-288 995.3 679 74.8
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 4.0e-288 994.6 709 70.8
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 5.3e-288 994.2 682 73.8
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 6.9e-288 993.8 727 68.9
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 9.0e-288 993.4 726 69.7
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 9.0e-288 993.4 725 68.6
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 1.2e-287 993.0 722 69.5
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 1.5e-287 992.6 711 70.3
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.5e-287 992.6 726 68.9
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 2.6e-287 991.9 690 72.5
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 5.5e-285 984.2 725 68.1
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 2.7e-284 981.9 726 68.6
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 3.3e-282 974.9 734 67.7
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 4.3e-282 974.5 752 67.3
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 5.7e-282 974.2 703 69.8
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 1.3e-281 973.0 704 70.6
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 1.8e-280 969.1 709 69.8
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 3.4e-279 964.9 709 69.5
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 8.4e-278 960.3 718 67.7
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.6e-276 956.1 639 76.2
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 6.1e-276 954.1 706 68.4
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 3.9e-275 951.4 728 68.0
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 5.7e-274 947.6 722 67.9
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 5.7e-274 947.6 709 67.7
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.8e-273 945.3 657 73.7
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 1.8e-272 942.6 720 67.8
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 3.1e-272 941.8 720 67.6
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 3.1e-272 941.8 720 67.6
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.5e-271 937.9 726 65.3
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 5.9e-271 937.6 719 67.6
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.0e-270 936.8 732 67.6
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 1.0e-270 936.8 695 68.1
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-270 936.4 726 67.2
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 3.2e-269 931.8 714 66.4
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 7.2e-269 930.6 723 66.9
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 1.4e-267 926.4 613 79.1
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 1.8e-267 926.0 666 71.9
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 9.7e-266 920.2 725 64.7
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 1.1e-261 906.7 747 64.7
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 6.7e-259 897.5 709 65.6
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 2.0e-258 896.0 709 65.2
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 4.5e-247 858.2 722 63.6
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 7.7e-247 857.4 728 63.7
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.0e-246 857.1 620 73.2
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.0e-246 857.1 713 62.6
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 5.0e-246 854.7 553 80.3
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 2.5e-245 852.4 726 63.4
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 2.7e-239 832.4 579 74.4
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.3e-238 830.1 649 68.0
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 5.0e-238 828.2 719 59.9
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.1e-236 821.2 564 76.1
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 2.3e-235 819.3 728 59.2
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.3e-225 786.9 620 68.1
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 4.9e-225 785.0 707 59.5
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.3e-222 776.9 720 59.9
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.4e-211 740.3 577 67.2
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 1.9e-205 719.9 716 54.5
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.6e-204 715.7 671 57.7
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 2.0e-194 683.3 498 69.7
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 2.9e-193 679.5 721 53.1
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 9.9e-186 654.4 708 51.0
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 9.0e-163 578.2 607 53.7
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.4e-152 544.3 892 40.5
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 6.7e-150 535.4 339 77.0
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 4.2e-128 463.0 451 57.9
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.0e-121 441.8 264 83.0
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.5e-121 439.1 261 84.7
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 1.7e-92 344.7 367 51.8
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 4.6e-90 336.7 325 57.5
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 7.3e-88 329.3 505 40.2
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 1.9e-67 261.5 549 35.9
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 6.0e-58 229.9 289 48.1
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 7.6e-53 213.0 189 58.2
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 2.1e-50 204.9 143 71.3
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 1.3e-41 175.6 321 39.3
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 3.9e-41 174.1 138 66.7
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 1.1e-40 172.6 122 71.3
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 6.3e-39 166.8 305 38.7
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 4.7e-34 150.6 122 63.1
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 7.9e-34 149.8 177 48.0
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 6.7e-33 146.7 124 61.3
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 6.3e-31 140.2 160 50.6
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 4.5e-29 134.0 121 61.2
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 6.7e-25 120.2 322 31.1
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 9.4e-19 99.8 88 58.0
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 1.2e-16 92.8 85 56.5
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 7.5e-16 90.1 72 63.9
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 1.2e-13 82.8 58 65.5
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.7e-13 80.1 73 56.2
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 7.7e-13 80.1 73 56.2
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.5e-11 75.1 51 68.6
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 2.1e-10 72.0 65 49.2
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 8.8e-09 66.6 37 83.8
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 8.3e-07 60.1 291 26.5


User provided reference genes

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