Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 1.6e-163 579.3 283 100.0
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 1.5e-92 343.6 207 82.1
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 9.5e-84 314.3 232 68.5
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 1.8e-82 310.1 195 75.9
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 5.2e-82 308.5 193 74.6
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 5.8e-81 305.1 197 73.1
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 1.7e-80 303.5 189 75.7
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 2.2e-80 303.1 214 68.2
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 2.2e-80 303.1 234 64.5
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 4.1e-79 298.9 194 73.2
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 5.4e-79 298.5 211 68.2
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 2.0e-78 296.6 198 72.2
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.0e-78 296.6 200 72.5
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 1.7e-77 293.5 201 69.7
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 6.6e-77 291.6 206 67.0
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 1.1e-76 290.8 189 75.1
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.5e-76 290.4 200 70.5
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 1.9e-76 290.0 198 70.2
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 7.3e-76 288.1 204 69.1
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 9.5e-76 287.7 198 70.2
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.6e-75 287.0 198 69.7
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 2.8e-75 286.2 189 74.1
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 4.7e-75 285.4 205 65.4
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 6.2e-75 285.0 190 70.5
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 8.0e-75 284.6 229 62.9
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.2e-74 282.0 205 64.9
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 1.2e-73 280.8 197 66.5
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 1.2e-73 280.8 195 69.2
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 1.2e-73 280.8 185 70.3
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 2.6e-73 279.6 197 65.5
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 5.8e-73 278.5 197 65.5
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 9.8e-73 277.7 204 63.7
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 1.3e-72 277.3 191 66.5
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 2.2e-72 276.6 191 69.1
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 4.9e-72 275.4 194 67.5
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 6.4e-72 275.0 238 56.7
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 8.3e-72 274.6 200 68.0
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 1.1e-71 274.2 197 66.0
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 1.4e-71 273.9 194 64.9
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 2.4e-71 273.1 204 60.3
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 2.4e-71 273.1 204 60.3
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 5.4e-71 271.9 204 60.3
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 9.2e-71 271.2 204 63.2
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 1.6e-70 270.4 191 67.5
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 2.1e-70 270.0 200 66.5
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 2.7e-70 269.6 193 65.3
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 4.6e-70 268.9 204 60.3
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 4.6e-70 268.9 201 62.7
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 6.0e-70 268.5 191 67.0
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 6.0e-70 268.5 193 65.3
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 6.0e-70 268.5 173 68.2
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 2.3e-69 266.5 202 61.4
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 1.5e-68 263.8 190 66.3
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 2.5e-68 263.1 179 70.9
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 2.5e-68 263.1 177 70.6
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 2.5e-68 263.1 191 64.9
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 3.3e-68 262.7 189 65.6
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 5.6e-68 261.9 192 59.9
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 7.3e-68 261.5 189 63.5
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 3.6e-67 259.2 171 69.6
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 8.1e-67 258.1 199 61.3
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 1.4e-66 257.3 205 60.0
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 1.8e-66 256.9 199 60.8
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 3.1e-66 256.1 193 62.2
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 3.4e-65 252.7 212 55.2
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 4.4e-65 252.3 192 63.0
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 3.7e-64 249.2 216 55.1
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.1e-63 247.7 170 62.9
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 1.2e-62 244.2 172 65.1
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 2.1e-62 243.4 189 59.8
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 2.7e-62 243.0 176 61.9
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 2.3e-61 240.0 177 63.8
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 5.1e-61 238.8 191 57.6
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 3.3e-60 236.1 219 51.1
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 9.5e-60 234.6 190 55.3
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 2.8e-59 233.0 180 60.0
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 4.7e-59 232.3 175 58.3
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 4.7e-59 232.3 175 58.3
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 4.7e-59 232.3 180 60.0
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 2.4e-58 229.9 180 56.1
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 6.8e-58 228.4 187 55.6
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 8.9e-58 228.0 157 68.2
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 2.0e-57 226.9 175 57.7
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 2.0e-57 226.9 175 57.7
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 4.4e-57 225.7 182 59.3
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 7.6e-57 224.9 165 61.8
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 7.6e-57 224.9 188 55.3
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 9.9e-57 224.6 199 51.8
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.9e-52 210.3 195 53.8
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 5.6e-52 208.8 164 61.0
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 3.2e-47 193.0 160 55.6
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 5.1e-45 185.7 134 68.7
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 1.1e-44 184.5 145 64.1
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 2.1e-43 180.3 194 44.8
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 2.4e-42 176.8 135 64.4
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 1.5e-41 174.1 129 66.7
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 2.2e-40 170.2 134 61.2
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.2e-33 147.9 71 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 1.0e-29 134.8 142 45.1
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 3.9e-29 132.9 139 49.6
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 1.3e-27 127.9 172 39.5
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 3.1e-26 123.2 205 36.1
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.1e-23 114.8 204 36.3
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.9e-23 114.0 71 77.5
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 1.0e-21 108.2 71 71.8
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 5.1e-21 105.9 76 56.6
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 1.5e-20 104.4 158 34.8
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 5.7e-20 102.4 76 56.6
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 4.8e-19 99.4 167 32.9
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 1.4e-18 97.8 200 30.5
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 1.8e-18 97.4 160 32.5
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 2.6e-17 93.6 82 59.8
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 3.4e-17 93.2 171 29.8
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 3.4e-17 93.2 110 43.6
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 5.9e-17 92.4 84 52.4
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 5.9e-17 92.4 203 31.5
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 7.7e-17 92.0 169 34.3
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 1.0e-16 91.7 169 32.5
Haze_22366 Corylus avellana HOM05D008077 ORTHO05D010221 1.7e-16 90.9 171 29.2
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 1.7e-16 90.9 166 33.7
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 3.8e-16 89.7 157 33.8
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 1.4e-15 87.8 165 31.5
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 1.9e-15 87.4 188 29.3
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 2.5e-15 87.0 79 53.2
QL09p016211 Quercus lobata HOM05D008077 ORTHO05D010221 9.4e-15 85.1 173 28.3
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 9.4e-15 85.1 163 31.3
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.2e-14 84.7 154 33.1
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.2e-14 84.7 167 31.7
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 1.2e-14 84.7 175 28.6
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 6.1e-14 82.4 74 56.8
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.0e-13 81.6 69 58.0
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 1.8e-13 80.9 70 58.6
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 1.8e-13 80.9 166 29.5
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 2.3e-13 80.5 71 59.2
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 2.3e-13 80.5 73 60.3
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 3.9e-13 79.7 61 62.3
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 3.9e-13 79.7 166 33.1
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 6.7e-13 79.0 169 30.2
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 6.7e-13 79.0 166 32.5
Lalb_Chr14g0367971 Lupinus albus HOM05D008077 ORTHO05D010221 1.1e-12 78.2 184 26.1
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 1.5e-12 77.8 134 30.6
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 2.5e-12 77.0 134 30.6
Actinidia17847 Actinidia chinensis HOM05D000827 ORTHO05D008888 3.3e-12 76.6 68 58.8
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 7.4e-12 75.5 172 28.5
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 9.7e-12 75.1 165 30.3
TPR.G13063 Trifolium pratense HOM05D008077 ORTHO05D010221 9.7e-12 75.1 142 27.5
Oeu048561.1 Olea europaea HOM05D008077 ORTHO05D010221 1.3e-11 74.7 133 34.6
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 1.7e-11 74.3 74 52.7
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 2.2e-11 73.9 179 29.1
Psat6g018560 Pisum sativum HOM05D008077 ORTHO05D010221 2.2e-11 73.9 136 27.2
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 2.8e-11 73.6 169 28.4
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 3.7e-11 73.2 143 31.5
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 4.8e-11 72.8 75 45.3
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 4.8e-11 72.8 57 66.7
EL10Ac1g02339 Beta vulgaris HOM05D008077 ORTHO05D010221 6.3e-11 72.4 188 28.2
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 6.3e-11 72.4 166 28.9
MD08G1076300 Malus domestica HOM05D008077 ORTHO05D010221 1.1e-10 71.6 170 30.0
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 1.4e-10 71.2 72 45.8
Prupe.1G417600 Prunus persica HOM05D008077 ORTHO05D010221 1.8e-10 70.9 177 26.0
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 1.8e-10 70.9 159 25.8
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 2.4e-10 70.5 183 24.6
Glyma.17G232225 Glycine max HOM05D008077 ORTHO05D010221 3.1e-10 70.1 183 24.0
Gohir.A01G124500 Gossypium hirsutum HOM05D008077 ORTHO05D010221 4.1e-10 69.7 166 31.3
Medtr1g017160 Medicago truncatula HOM05D008077 ORTHO05D010221 6.9e-10 68.9 135 28.9
RcHm_v2.0_Chr6g0310221 Rosa chinensis HOM05D008077 ORTHO05D010221 6.9e-10 68.9 176 26.7
Pp3c24_11510 Physcomitrium patens HOM05D007054 ORTHO05D008888 9.1e-10 68.6 140 27.9
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 2.0e-09 67.4 70 47.1
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 4.5e-09 66.2 150 26.0
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.3e-08 64.7 36 69.4
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 1.7e-08 64.3 73 49.3
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 2.2e-08 63.9 74 48.6
CsaV3_4G035360 Cucumis sativus L. HOM05D008077 ORTHO05D010221 2.9e-08 63.5 155 27.7
Ca_06992_v3 Cicer arietinum L. HOM05D008077 ORTHO05D010221 5.0e-08 62.8 135 25.9
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.4e-07 61.2 74 47.3
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 2.5e-07 60.5 150 23.3
FAN15G0649 Fragaria x ananassa HOM05D008077 ORTHO05D010221 3.2e-07 60.1 167 28.7
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 4.2e-07 59.7 74 50.0
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 9.4e-07 58.5 69 44.9
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 9.4e-07 58.5 139 27.3
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 1.2e-06 58.2 69 49.3
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 1.6e-06 57.8 153 26.8
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 7.9e-06 55.5 69 44.9
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 7.9e-06 55.5 73 46.6
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 7.9e-06 55.5 77 45.5


User provided reference genes

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