Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 2.6e-161 572.0 290 100.0
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 2.5e-116 422.5 295 74.9
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 2.1e-115 419.5 278 77.7
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 1.0e-112 410.6 289 74.0
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 3.4e-97 359.0 292 65.8
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 4.8e-91 338.6 433 49.2
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 6.3e-91 338.2 292 62.0
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 5.9e-89 331.6 290 62.8
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 1.9e-87 326.6 297 59.6
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 2.7e-86 322.8 264 63.6
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 1.0e-85 320.9 271 59.8
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 1.8e-85 320.1 277 62.1
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 5.2e-85 318.5 298 59.7
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 1.5e-84 317.0 267 61.4
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 2.0e-84 316.6 291 59.5
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 2.6e-84 316.2 284 59.5
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 1.3e-83 313.9 243 66.3
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 1.7e-83 313.5 285 59.6
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 8.2e-83 311.2 298 57.0
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 1.8e-82 310.1 273 61.5
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 2.4e-82 309.7 284 59.5
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 7.0e-82 308.1 262 61.5
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 9.1e-82 307.8 361 50.7
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 4.5e-81 305.4 279 56.3
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 5.9e-81 305.1 279 58.8
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 1.3e-80 303.9 288 56.6
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 3.8e-80 302.4 281 56.9
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 5.0e-80 302.0 184 78.8
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 1.1e-79 300.8 239 66.1
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 1.5e-79 300.4 213 69.5
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 1.5e-79 300.4 239 65.7
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 1.5e-79 300.4 275 59.3
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 2.5e-79 299.7 224 69.2
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 3.2e-79 299.3 243 61.3
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 3.2e-79 299.3 281 57.7
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 3.2e-79 299.3 306 57.2
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 4.2e-79 298.9 300 56.0
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 5.5e-79 298.5 254 60.6
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 9.4e-79 297.7 238 64.3
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 2.1e-78 296.6 263 59.7
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 2.7e-78 296.2 260 56.9
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 3.6e-78 295.8 274 58.8
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 6.1e-78 295.0 222 68.9
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.4e-77 293.9 202 72.3
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.8e-77 293.5 215 68.8
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 3.0e-77 292.7 222 68.0
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 4.0e-77 292.4 264 58.3
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 5.2e-77 292.0 215 68.8
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 8.8e-77 291.2 218 68.8
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 8.8e-77 291.2 215 67.9
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.5e-76 290.4 269 58.4
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 3.3e-76 289.3 215 67.4
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 9.7e-76 287.7 219 65.3
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.3e-75 287.3 270 57.4
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 1.3e-75 287.3 270 57.4
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 1.7e-75 287.0 271 59.0
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 6.3e-75 285.0 238 63.4
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 2.4e-74 283.1 232 62.5
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 2.4e-74 283.1 269 58.7
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 4.1e-74 282.3 260 57.7
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 4.1e-74 282.3 264 59.5
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 7.0e-74 281.6 268 56.7
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 7.0e-74 281.6 307 53.1
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 9.1e-74 281.2 295 55.6
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 1.2e-73 280.8 260 58.8
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.0e-73 280.0 215 65.6
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 5.9e-73 278.5 264 54.9
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 7.7e-73 278.1 281 56.2
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 1.0e-72 277.7 306 52.6
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 2.2e-72 276.6 222 64.0
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 2.9e-72 276.2 287 55.4
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 3.8e-72 275.8 280 55.7
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 3.2e-71 272.7 255 58.4
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 9.4e-71 271.2 251 59.4
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 3.0e-69 266.2 182 70.9
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 1.5e-68 263.8 226 58.8
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 2.0e-68 263.5 255 57.3
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 2.6e-68 263.1 295 51.9
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 3.4e-68 262.7 242 57.4
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 1.1e-66 257.7 223 60.5
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 4.1e-66 255.8 243 57.6
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 4.1e-66 255.8 243 57.6
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 9.1e-66 254.6 242 56.2
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 1.2e-65 254.2 187 67.4
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 2.0e-65 253.4 246 56.9
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 2.0e-65 253.4 243 57.2
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 2.7e-65 253.1 246 56.9
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.1e-58 231.1 295 45.8
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 1.7e-56 223.8 296 47.3
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 3.8e-56 222.6 266 51.1
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 3.8e-56 222.6 218 56.4
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 4.0e-53 212.6 210 51.9
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 2.0e-52 210.3 210 51.4
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 1.3e-51 207.6 166 62.0
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 2.3e-48 196.8 253 45.1
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 5.0e-48 195.7 163 56.4
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 6.6e-48 195.3 202 56.9
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 6.6e-48 195.3 275 45.5
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 1.2e-46 191.0 207 50.7
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 2.2e-43 180.3 161 51.6
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 1.5e-36 157.5 142 61.3
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 5.8e-36 155.6 301 41.9
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 2.4e-34 150.2 96 75.0
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 7.1e-34 148.7 167 47.9
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 8.6e-32 141.7 203 43.8
vmacro04046 Vaccinium macrocarpon HOM05D002956 ORTHO05D009000 1.9e-31 140.6 144 60.4
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 1.4e-29 134.4 190 44.7
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 3.8e-27 126.3 160 45.0
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 6.4e-27 125.6 133 49.6
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.0e-24 118.2 141 52.5
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 2.3e-24 117.1 141 49.6
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 2.5e-23 113.6 184 41.3
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 9.9e-12 75.1 70 52.9
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 3.8e-11 73.2 77 48.1
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 6.4e-11 72.4 102 41.2
Psat5g184640 Pisum sativum HOM05D002956 ORTHO05D009000 4.2e-10 69.7 124 40.3
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 9.3e-10 68.6 84 50.0
Oeu027210.1 Olea europaea HOM05D002956 ORTHO05D009000 1.3e-06 58.2 80 45.0


User provided reference genes

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