Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047296 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D110662 6.1e-48 193.7 93 100.0
CSS0042735 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D112192 3.7e-45 184.5 93 94.6
CSS0001464 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D110406 1.6e-43 179.1 93 93.5
CSS0005326 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D112988 2.7e-43 178.3 95 92.6
CSS0043451 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D110155 8.6e-42 173.3 95 91.6
CSS0028815 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D110863 1.6e-35 152.5 84 89.3
CSS0036191 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D109912 9.8e-30 133.3 90 82.2
CSS0050008 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D110681 1.1e-23 113.2 95 71.6
CSS0042043 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D001875 5.6e-09 64.3 90 47.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 9.6e-09 63.5 65 52.3
Thecc.01G393300 Theobroma cacao HOM05D001766 ORTHO05D001875 3.6e-08 61.6 56 58.9
TWI59G1480 Tripterygium wilfordii HOM05D001766 ORTHO05D001875 4.8e-08 61.2 64 48.4
FvH4_7g09920 Fragaria vesca HOM05D001766 ORTHO05D001875 6.2e-08 60.8 56 57.1
FAN06G1164 Fragaria x ananassa HOM05D001766 ORTHO05D001875 6.2e-08 60.8 56 57.1
FAN06G2952 Fragaria x ananassa HOM05D001766 ORTHO05D001875 6.2e-08 60.8 56 57.1
FAN10G0704 Fragaria x ananassa HOM05D001766 ORTHO05D001875 6.2e-08 60.8 57 56.1
FAN10G1236 Fragaria x ananassa HOM05D001766 ORTHO05D001875 6.2e-08 60.8 57 56.1
RcHm_v2.0_Chr1g0347441 Rosa chinensis HOM05D001766 ORTHO05D001875 6.2e-08 60.8 56 55.4
TWI59G0567 Tripterygium wilfordii HOM05D001766 ORTHO05D001875 6.2e-08 60.8 60 50.0
PGR004G1632 Punica granatum HOM05D001766 ORTHO05D001875 1.1e-07 60.1 65 49.2
PGR117G0004 Punica granatum HOM05D001766 ORTHO05D001875 1.1e-07 60.1 65 49.2
Actinidia10846 Actinidia chinensis HOM05D001766 ORTHO05D001875 1.4e-07 59.7 57 54.4
Dinv43630 Davidia involucrata HOM05D001766 ORTHO05D001875 1.4e-07 59.7 56 57.1
Sc22g0001040 Simmondsia chinensis HOM05D001766 ORTHO05D001875 1.4e-07 59.7 63 49.2
TPR.G12145 Trifolium pratense HOM05D001766 ORTHO05D001875 1.4e-07 59.7 64 46.9
Prupe.2G128000 Prunus persica HOM05D001766 ORTHO05D001875 1.8e-07 59.3 56 55.4
TAR374G1385 Trochodendron aralioides HOM05D001766 ORTHO05D001875 1.8e-07 59.3 56 55.4
TAR636G3076 Trochodendron aralioides HOM05D001766 ORTHO05D001875 1.8e-07 59.3 56 55.4
GSVIVG01018256001 Vitis vinifera HOM05D001766 ORTHO05D001875 1.8e-07 59.3 56 55.4
Gohir.A12G096600 Gossypium hirsutum HOM05D001766 ORTHO05D001875 2.4e-07 58.9 56 55.4
Gohir.D12G099400 Gossypium hirsutum HOM05D001766 ORTHO05D001875 2.4e-07 58.9 56 55.4
Gorai.008G108300 Gossypium raimondii HOM05D001766 ORTHO05D001875 2.4e-07 58.9 56 55.4
Rhsim01G0139200 Rhododendron simsii HOM05D001766 ORTHO05D001875 2.4e-07 58.9 56 55.4
Actinidia33501 Actinidia chinensis HOM05D001766 ORTHO05D001875 3.1e-07 58.5 56 55.4
Duzib268G1470 Durio zibethinus HOM05D001766 ORTHO05D001875 3.1e-07 58.5 56 53.6
Medtr7g007760 Medicago truncatula HOM05D001766 ORTHO05D001875 3.1e-07 58.5 64 46.9
Nitab4.5_0003696g0030 Nicotiana tabacum HOM05D001766 ORTHO05D001875 3.1e-07 58.5 60 50.0
GSVIVG01007149001 Vitis vinifera HOM05D001766 ORTHO05D001875 3.1e-07 58.5 56 51.8
Atru.chr9.1255 Acer truncatum HOM05D001766 ORTHO05D001875 4.0e-07 58.2 58 53.4
CANSAT21G0485 Cannabis sativa HOM05D001766 ORTHO05D001875 4.0e-07 58.2 56 51.8
CANSAT21G2596 Cannabis sativa HOM05D001766 ORTHO05D001875 4.0e-07 58.2 56 51.8
Duzib133G0511 Durio zibethinus HOM05D001766 ORTHO05D001875 4.0e-07 58.2 56 57.1
Glyma.01G207200 Glycine max HOM05D001766 ORTHO05D001875 4.0e-07 58.2 56 53.6
Manes.01G084700 Manihot esculenta HOM05D001766 ORTHO05D001875 4.0e-07 58.2 56 53.6
Nn6g33836 Nelumbo nucifera HOM05D001766 ORTHO05D001875 4.0e-07 58.2 56 53.6
PSO063G4893 Papaver somniferum HOM05D001766 ORTHO05D001875 4.0e-07 58.2 56 51.8
PSO782G5326 Papaver somniferum HOM05D001766 ORTHO05D001875 4.0e-07 58.2 56 51.8
THA.LOC104802493 Tarenaya hassleriana HOM05D001766 ORTHO05D001875 4.0e-07 58.2 56 53.6
THA.LOC104817193 Tarenaya hassleriana HOM05D001766 ORTHO05D001875 4.0e-07 58.2 56 55.4
CANSAT21G0959 Cannabis sativa HOM05D001766 ORTHO05D001875 5.3e-07 57.8 56 53.6
CiPaw.11G083100 Carya illinoinensis HOM05D001766 ORTHO05D001875 5.3e-07 57.8 81 40.7
Duzib205G1428 Durio zibethinus HOM05D001766 ORTHO05D001875 5.3e-07 57.8 56 53.6
Eucgr.E00394 Eucalyptus grandis HOM05D001766 ORTHO05D001875 5.3e-07 57.8 57 52.6
Lsat_1_v5_gn_3_360 Lactuca sativa HOM05D001766 ORTHO05D001875 5.3e-07 57.8 39 66.7
TWI14G0165 Tripterygium wilfordii HOM05D001766 ORTHO05D001875 5.3e-07 57.8 56 51.8
TWI14G0464 Tripterygium wilfordii HOM05D001766 ORTHO05D001875 5.3e-07 57.8 56 51.8
Ciclev10020946m.g Citrus clementina HOM05D001766 ORTHO05D001875 6.9e-07 57.4 56 51.8
Nitab4.5_0003553g0020 Nicotiana tabacum HOM05D001766 ORTHO05D001875 6.9e-07 57.4 56 51.8
Os03g0101100 Oryza sativa ssp. japonica HOM05D001766 ORTHO05D001875 6.9e-07 57.4 56 53.6
PSO339G1074 Papaver somniferum HOM05D001766 ORTHO05D001875 6.9e-07 57.4 60 51.7
Peaxi162Scf00346g00416 Petunia axillaris HOM05D001766 ORTHO05D001875 6.9e-07 57.4 60 51.7
Prupe.5G063800 Prunus persica HOM05D001766 ORTHO05D001875 6.9e-07 57.4 56 51.8
Actinidia31507 Actinidia chinensis HOM05D001766 ORTHO05D001875 9.0e-07 57.0 56 50.0
AL5G42580 Arabidopsis lyrata HOM05D001766 ORTHO05D001875 9.0e-07 57.0 56 51.8
Carub.0005s2709 Capsella rubella HOM05D001766 ORTHO05D001875 9.0e-07 57.0 56 51.8
Dinv21672 Davidia involucrata HOM05D001766 ORTHO05D001875 9.0e-07 57.0 56 51.8
Thhalv10006085m.g Eutrema salsugineum HOM05D001766 ORTHO05D001875 9.0e-07 57.0 56 51.8
Glyma.18G253200 Glycine max HOM05D001766 ORTHO05D001875 9.0e-07 57.0 64 46.9
Manes.05G053500 Manihot esculenta HOM05D001766 ORTHO05D001875 9.0e-07 57.0 56 51.8
Peaxi162Scf00030g00044 Petunia axillaris HOM05D001766 ORTHO05D001875 9.0e-07 57.0 55 52.7
Sp5g02890 Schrenkiella parvula HOM05D001766 ORTHO05D001875 9.0e-07 57.0 56 51.8
Zm00001eb390960 Zea mays HOM05D001766 ORTHO05D001875 9.0e-07 57.0 56 51.8
ATR0057G087 Amborella trichopoda HOM05D001766 ORTHO05D001875 1.2e-06 56.6 56 51.8
CAN.G1312.13 Capsicum annuum HOM05D001766 ORTHO05D001875 1.2e-06 56.6 56 51.8
Gohir.A12G214800 Gossypium hirsutum HOM05D001766 ORTHO05D001875 1.2e-06 56.6 56 51.8
Gohir.D12G217400 Gossypium hirsutum HOM05D001766 ORTHO05D001875 1.2e-06 56.6 56 51.8
Gorai.008G233000 Gossypium raimondii HOM05D001766 ORTHO05D001875 1.2e-06 56.6 56 51.8
Lalb_Chr16g0379451 Lupinus albus HOM05D001766 ORTHO05D001875 1.2e-06 56.6 56 51.8
Nitab4.5_0002601g0060 Nicotiana tabacum HOM05D001766 ORTHO05D001875 1.2e-06 56.6 56 51.8
Nitab4.5_0009564g0030 Nicotiana tabacum HOM05D001766 ORTHO05D001875 1.2e-06 56.6 56 51.8
Psat2g177400 Pisum sativum HOM05D001766 ORTHO05D001875 1.2e-06 56.6 56 53.6
TPR.G29087 Trifolium pratense HOM05D001766 ORTHO05D001875 1.2e-06 56.6 56 53.6
TWI59G1439 Tripterygium wilfordii HOM05D001766 ORTHO05D001875 1.2e-06 56.6 55 52.7
CiPaw.12G049200 Carya illinoinensis HOM05D001766 ORTHO05D001875 1.5e-06 56.2 56 51.8
Ca_24595_v3 Cicer arietinum L. HOM05D001766 ORTHO05D001875 1.5e-06 56.2 56 51.8
Migut.A01154 Erythranthe guttata HOM05D001766 ORTHO05D001875 1.5e-06 56.2 56 50.0
PSO384G4729 Papaver somniferum HOM05D001766 ORTHO05D001875 1.5e-06 56.2 56 51.8
Phvul.002G056200 Phaseolus vulgaris HOM05D001766 ORTHO05D001875 1.5e-06 56.2 56 50.0
PGR042G2193 Punica granatum HOM05D001766 ORTHO05D001875 1.5e-06 56.2 56 51.8
Sabra03G0051300 Salix brachista HOM05D001766 ORTHO05D010487 1.5e-06 56.2 56 51.8
SGA_v2.0_scaffold199G41226 Striga asiatica HOM05D001766 ORTHO05D001875 1.5e-06 56.2 56 50.0
Actinidia02165 Actinidia chinensis HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 51.8
Actinidia14395 Actinidia chinensis HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 51.8
HanXRQChr13g0423381 Helianthus annuus HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 50.0
Lsat_1_v5_gn_3_131760 Lactuca sativa HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 51.8
Potri.003G080100 Populus trichocarpa HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 50.0
QL04p030690 Quercus lobata HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 55.4
QL04p030766 Quercus lobata HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 55.4
Sabra03G0050200 Salix brachista HOM05D001766 ORTHO05D010487 2.0e-06 55.8 56 50.0
Hund28005 Selenicereus undatus HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 51.8
Hund28008 Selenicereus undatus HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 51.8
Sc26g0001550 Simmondsia chinensis HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 51.8
SGA_v2.0_scaffold104G30199 Striga asiatica HOM05D001766 ORTHO05D001875 2.0e-06 55.8 56 50.0
arahy.Tifrunner.gnm1.ann1.NN5THJ Arachis hypogaea HOM05D001766 ORTHO05D001875 2.6e-06 55.5 56 51.8
arahy.Tifrunner.gnm1.ann1.V17G3V Arachis hypogaea HOM05D001766 ORTHO05D001875 2.6e-06 55.5 56 51.8
Cpa.g.sc89.59 Carica papaya HOM05D001766 ORTHO05D001875 2.6e-06 55.5 56 50.0
DCAR_029751 Daucus carota HOM05D001766 ORTHO05D001875 2.6e-06 55.5 59 50.8
FAN04G2713 Fragaria x ananassa HOM05D001766 ORTHO05D001875 2.6e-06 55.5 103 35.9
Hma1.2p1_1196F.1_g266055 Hydrangea macrophylla HOM05D001766 ORTHO05D001875 2.6e-06 55.5 56 51.8
Hma1.2p1_1335F.1_g276390 Hydrangea macrophylla HOM05D001766 ORTHO05D001875 2.6e-06 55.5 56 51.8
Rhsim07G0115500 Rhododendron simsii HOM05D001766 ORTHO05D001875 2.6e-06 55.5 56 48.2
SalBow6G4780 Salvia bowleyana HOM05D001766 ORTHO05D001875 2.6e-06 55.5 56 50.0
unitig_21.g20308 Utricularia gibba HOM05D001766 ORTHO05D001875 2.6e-06 55.5 56 50.0
AT3G60340 Arabidopsis thaliana HOM05D001766 ORTHO05D001875 3.4e-06 55.1 56 50.0
ECA240G3647 Erigeron canadensis HOM05D001766 ORTHO05D001875 3.4e-06 55.1 56 51.8
FAN18G2463 Fragaria x ananassa HOM05D001766 ORTHO05D001875 3.4e-06 55.1 56 48.2
Lsat_1_v5_gn_3_131740 Lactuca sativa HOM05D001766 ORTHO05D001875 3.4e-06 55.1 56 51.8
MD07G1104400 Malus domestica HOM05D001766 ORTHO05D001875 3.4e-06 55.1 55 52.7
Medtr5g013020 Medicago truncatula HOM05D001766 ORTHO05D001875 3.4e-06 55.1 56 51.8
QL04p030738 Quercus lobata HOM05D001766 ORTHO05D001875 3.4e-06 55.1 60 48.3
QL12p010900 Quercus lobata HOM05D001766 ORTHO05D001875 3.4e-06 55.1 56 50.0
Solyc01g090410.3 Solanum lycopersicum HOM05D001766 ORTHO05D001875 3.4e-06 55.1 56 50.0
Sopen01g036200 Solanum pennellii HOM05D001766 ORTHO05D001875 3.4e-06 55.1 56 50.0
TWI60G0998 Tripterygium wilfordii HOM05D001766 ORTHO05D001875 3.4e-06 55.1 56 50.0
VMungo1215G2095 Vigna mungo HOM05D001766 ORTHO05D001875 3.4e-06 55.1 56 48.2
BcaC08g45048 Brassica carinata HOM05D001766 ORTHO05D001875 4.4e-06 54.7 61 45.9
CSS0033108 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D001875 4.4e-06 54.7 56 50.0
CSS0044715 Camellia sinensis var. sinensis HOM05D001766 ORTHO05D001875 4.4e-06 54.7 56 48.2
CARHR170660 Cardamine hirsuta HOM05D001766 ORTHO05D001875 4.4e-06 54.7 56 50.0
COL.COLO4_37102 Corchorus olitorius HOM05D001766 ORTHO05D001875 4.4e-06 54.7 56 50.0
FvH4_5g19650 Fragaria vesca HOM05D001766 ORTHO05D001875 4.4e-06 54.7 56 48.2
FAN13G0348 Fragaria x ananassa HOM05D001766 ORTHO05D001875 4.4e-06 54.7 56 48.2
Gohir.A08G138200 Gossypium hirsutum HOM05D001766 ORTHO05D001875 4.4e-06 54.7 55 52.7
Gohir.D08G159400 Gossypium hirsutum HOM05D001766 ORTHO05D001875 4.4e-06 54.7 55 52.7
Gorai.004G165600 Gossypium raimondii HOM05D001766 ORTHO05D001875 4.4e-06 54.7 55 52.7
MD04G1061600 Malus domestica HOM05D001766 ORTHO05D001875 4.4e-06 54.7 56 48.2
Nn1g00879 Nelumbo nucifera HOM05D001766 ORTHO05D001875 4.4e-06 54.7 56 50.0
Thecc.03G246400 Theobroma cacao HOM05D001766 ORTHO05D001875 4.4e-06 54.7 56 50.0
arahy.Tifrunner.gnm1.ann1.IRUX7A Arachis hypogaea HOM05D001766 ORTHO05D001875 5.8e-06 54.3 56 48.2
arahy.Tifrunner.gnm1.ann1.ZK5MJC Arachis hypogaea HOM05D001766 ORTHO05D001875 5.8e-06 54.3 56 48.2
EL10Ac5g12320 Beta vulgaris HOM05D001766 ORTHO05D001875 5.8e-06 54.3 56 50.0
CAN.G362.7 Capsicum annuum HOM05D001766 ORTHO05D001875 5.8e-06 54.3 56 48.2
Ca_04038_v3 Cicer arietinum L. HOM05D001766 ORTHO05D001875 5.8e-06 54.3 56 50.0
Dinv39180 Davidia involucrata HOM05D001766 ORTHO05D001875 5.8e-06 54.3 56 50.0
Potri.001G154600 Populus trichocarpa HOM05D001766 ORTHO05D001875 5.8e-06 54.3 56 50.0
vmacro14136 Vaccinium macrocarpon HOM05D001766 ORTHO05D001875 5.8e-06 54.3 56 48.2
HPP92_002101 Vanilla planifolia HOM05D001766 ORTHO05D001875 5.8e-06 54.3 56 50.0
Actinidia31508 Actinidia chinensis HOM05D001766 ORTHO05D001875 7.6e-06 53.9 57 49.1
PGSC0003DMG401026044 Solanum tuberosum HOM05D001766 ORTHO05D001875 7.6e-06 53.9 56 50.0
MSTRG.17135 Avicennia marina HOM05D001766 ORTHO05D001875 9.9e-06 53.5 56 48.2
MSTRG.20698 Avicennia marina HOM05D001766 ORTHO05D001875 9.9e-06 53.5 56 48.2
A07p25050 Brassica napus HOM05D001766 ORTHO05D001875 9.9e-06 53.5 56 48.2
C06p26660 Brassica napus HOM05D001766 ORTHO05D001875 9.9e-06 53.5 56 48.2
BolC6t37828H Brassica oleracea HOM05D001766 ORTHO05D001875 9.9e-06 53.5 56 48.2
BraA07t30145Z Brassica rapa HOM05D001766 ORTHO05D001875 9.9e-06 53.5 56 48.2
CDE11G1055 Ceratophyllum demersum HOM05D001766 ORTHO05D001875 9.9e-06 53.5 56 50.0
HanXRQChr06g0164501 Helianthus annuus HOM05D001766 ORTHO05D001875 9.9e-06 53.5 56 50.0
Sed0000728 Sechium edule HOM05D001766 ORTHO05D001875 9.9e-06 53.5 56 48.2
Zm00001eb000230 Zea mays HOM05D001766 ORTHO05D001875 9.9e-06 53.5 56 50.0


User provided reference genes

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