Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047270 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1743.4 971 100.0
CSS0009096 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1661.7 971 94.9
CSS0028328 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1434.5 932 88.8
CSS0024766 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1224.5 907 81.4
CSS0013290 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1129.4 892 73.5
CSS0007490 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1124.0 703 92.9
CSS0006813 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1081.2 903 71.7
CSS0002755 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 0.0e+00 1080.1 921 68.1
Actinidia38248 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.6e-138 498.0 902 40.6
Dinv04678 Davidia involucrata HOM05D003265 ORTHO05D003819 1.2e-125 455.3 900 40.2
Rhsim03G0122700 Rhododendron simsii HOM05D003265 ORTHO05D003819 1.8e-110 404.8 902 36.3
vmacro07090 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 3.2e-107 394.0 902 35.9
CSS0011554 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.9e-70 271.9 163 86.5
TAR633G0548 Trochodendron aralioides HOM05D003265 ORTHO05D003819 3.2e-70 271.2 969 31.9
GSVIVG01016342001 Vitis vinifera HOM05D003265 ORTHO05D003819 2.0e-64 251.9 867 31.1
CSS0047156 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.7e-63 248.8 162 79.0
Lj1A924T53 Lonicera japonica HOM05D003265 ORTHO05D003819 7.6e-56 223.4 908 30.0
TAR623G0684 Trochodendron aralioides HOM05D003265 ORTHO05D003819 2.3e-52 211.8 798 30.8
QL08p056892 Quercus lobata HOM05D003265 ORTHO05D003819 2.4e-41 175.3 827 27.3
DCAR_015272 Daucus carota HOM05D003265 ORTHO05D015078 3.1e-33 148.3 855 26.3
Nn2g10657 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.0e-28 133.3 741 25.9
Nn2g12994 Nelumbo nucifera HOM05D003265 ORTHO05D003819 1.8e-28 132.5 702 26.5
Manes.10G042100 Manihot esculenta HOM05D003265 ORTHO05D003819 4.8e-26 124.4 676 26.3
Dinv37252 Davidia involucrata HOM05D003265 ORTHO05D003819 1.1e-25 123.2 632 26.9
Haze_16937 Corylus avellana HOM05D003265 ORTHO05D003819 4.0e-25 121.3 814 25.3
Cfa017508 Carpinus fangiana HOM05D003265 ORTHO05D003819 2.6e-24 118.6 944 25.1
Prupe.2G219100 Prunus persica HOM05D003265 ORTHO05D003819 2.6e-24 118.6 742 26.5
Aqoxy3G02606 Aquilegia oxysepala HOM05D003265 ORTHO05D003819 4.5e-24 117.9 825 27.3
Haze_20650 Corylus avellana HOM05D003265 ORTHO05D003819 2.2e-23 115.5 949 24.3
Thecc.10G067600 Theobroma cacao HOM05D003265 ORTHO05D003819 2.2e-23 115.5 820 25.1
CiPaw.01G276700 Carya illinoinensis HOM05D003265 ORTHO05D003819 2.9e-23 115.2 821 26.2
Cpa.g.sc53.18 Carica papaya HOM05D003265 ORTHO05D003819 6.5e-23 114.0 827 24.9
Cfa001593 Carpinus fangiana HOM05D003265 ORTHO05D003819 3.2e-22 111.7 931 23.8
Prupe.6G241300 Prunus persica HOM05D003265 ORTHO05D003819 1.6e-21 109.4 755 28.2
CiPaw.10G137500 Carya illinoinensis HOM05D003265 ORTHO05D003819 7.9e-21 107.1 706 27.1
Potri.008G044500 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.0e-20 106.7 290 34.8
QL07p045275 Quercus lobata HOM05D003265 ORTHO05D003819 1.3e-20 106.3 906 25.5
Potri.010G217000 Populus trichocarpa HOM05D003265 ORTHO05D003819 1.8e-20 105.9 303 34.7
Rhsim04G0151400 Rhododendron simsii HOM05D003265 ORTHO05D003819 2.3e-20 105.5 900 25.7
Dinv35709 Davidia involucrata HOM05D003265 ORTHO05D003819 5.1e-20 104.4 648 28.2
Duzib128G1251 Durio zibethinus HOM05D003265 ORTHO05D003819 8.7e-20 103.6 688 26.0
FvH4_7g20180 Fragaria vesca HOM05D003265 ORTHO05D003819 8.7e-20 103.6 424 27.6
TWI74G1096 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 8.7e-20 103.6 652 25.6
Ciclev10033690m.g Citrus clementina HOM05D003265 ORTHO05D003819 1.1e-19 103.2 421 29.9
Duzib106G1563 Durio zibethinus HOM05D003265 ORTHO05D003819 2.5e-19 102.1 830 25.2
MD04G1104400 Malus domestica HOM05D003265 ORTHO05D003819 3.3e-19 101.7 798 25.2
Sed0014651 Sechium edule HOM05D003265 ORTHO05D003819 3.7e-18 98.2 410 28.0
MD07G1179700 Malus domestica HOM05D003265 ORTHO05D003819 6.2e-18 97.4 608 27.3
ClCG09G020420 Citrullus lanatus HOM05D003265 ORTHO05D003819 3.1e-17 95.1 412 28.2
MD12G1124300 Malus domestica HOM05D003265 ORTHO05D003819 3.1e-17 95.1 781 25.0
Cc09_g02720 Coffea canephora HOM05D014857 ORTHO05D015078 5.3e-17 94.4 461 29.9
Sabra08G0030800 Salix brachista HOM05D003265 ORTHO05D003819 5.3e-17 94.4 299 31.8
FAN03G0618 Fragaria x ananassa HOM05D003265 ORTHO05D003819 6.9e-17 94.0 450 27.3
Glyma.19G178700 Glycine max HOM05D003265 ORTHO05D003819 6.9e-17 94.0 215 35.8
COL.COLO4_23753 Corchorus olitorius HOM05D003265 ORTHO05D003819 1.5e-16 92.8 825 25.1
Peaxi162Scf00122g00211 Petunia axillaris HOM05D014857 ORTHO05D015078 2.0e-16 92.4 475 27.6
Atru.chr8.2556 Acer truncatum HOM05D003265 ORTHO05D003819 3.4e-16 91.7 806 25.6
Lalb_Chr20g0112961 Lupinus albus HOM05D003265 ORTHO05D003819 3.4e-16 91.7 674 24.9
Actinidia05271 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.3e-15 89.7 645 29.1
Duzib106G1383 Durio zibethinus HOM05D003265 ORTHO05D003819 2.9e-15 88.6 715 26.4
Gohir.A13G021500 Gossypium hirsutum HOM05D003265 ORTHO05D003819 8.4e-15 87.0 444 25.0
CSS0020316 Camellia sinensis var. sinensis HOM05D003265 ORTHO05D003819 1.1e-14 86.7 745 25.8
Thecc.05G053900 Theobroma cacao HOM05D003265 ORTHO05D003819 1.1e-14 86.7 949 23.7
arahy.Tifrunner.gnm1.ann1.1ZS95I Arachis hypogaea HOM05D003265 ORTHO05D003819 1.9e-14 85.9 136 39.7
arahy.Tifrunner.gnm1.ann1.H355B7 Arachis hypogaea HOM05D003265 ORTHO05D003819 1.9e-14 85.9 136 39.7
Glyma.03G177900 Glycine max HOM05D003265 ORTHO05D003819 1.9e-14 85.9 135 42.2
MSTRG.26726 Avicennia marina HOM05D003265 ORTHO05D003819 3.2e-14 85.1 799 25.5
RhsimUnG0118100 Rhododendron simsii HOM05D003265 ORTHO05D003819 4.2e-14 84.7 889 26.8
Migut.L01659 Erythranthe guttata HOM05D003265 ORTHO05D003819 5.5e-14 84.3 786 25.6
FAN10G1642 Fragaria x ananassa HOM05D003265 ORTHO05D003819 5.5e-14 84.3 489 26.0
Actinidia13106 Actinidia chinensis HOM05D003265 ORTHO05D003819 7.1e-14 84.0 223 34.5
PSO339G3745 Papaver somniferum HOM05D003265 ORTHO05D003819 1.2e-13 83.2 926 25.2
Oeu035141.2 Olea europaea HOM05D003265 ORTHO05D003819 1.6e-13 82.8 740 24.9
Lj1g0023124 Lotus japonicus HOM05D003265 ORTHO05D003819 2.1e-13 82.4 135 43.7
vmacro20061 Vaccinium macrocarpon HOM05D003265 ORTHO05D003819 2.1e-13 82.4 280 31.1
Cc06_g03550 Coffea canephora HOM05D003265 ORTHO05D003819 3.5e-13 81.6 670 25.4
Eucgr.A01175 Eucalyptus grandis HOM05D003265 ORTHO05D003819 3.5e-13 81.6 602 26.6
Gohir.D13G022100 Gossypium hirsutum HOM05D003265 ORTHO05D003819 4.6e-13 81.3 438 24.9
TWI63G0250 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 4.6e-13 81.3 390 29.0
Gorai.013G024900 Gossypium raimondii HOM05D003265 ORTHO05D003819 6.1e-13 80.9 438 24.9
PSO384G1633 Papaver somniferum HOM05D003265 ORTHO05D003819 6.1e-13 80.9 927 24.7
GSVIVG01025624001 Vitis vinifera HOM05D000855 ORTHO05D002321 7.9e-13 80.5 229 31.9
Ca_08825_v3 Cicer arietinum L. HOM05D003265 ORTHO05D003819 1.0e-12 80.1 614 27.2
CsaV3_5G026000 Cucumis sativus L. HOM05D003265 ORTHO05D003819 1.8e-12 79.3 127 39.4
FAN06G4411 Fragaria x ananassa HOM05D000122 ORTHO05D003819 1.8e-12 79.3 127 39.4
ClCG10G020560 Citrullus lanatus HOM05D003265 ORTHO05D003819 3.0e-12 78.6 139 39.6
VMungo1383G3553 Vigna mungo HOM05D003265 ORTHO05D003819 3.0e-12 78.6 214 35.5
PGSC0003DMG400002154 Solanum tuberosum HOM05D014857 ORTHO05D015078 3.9e-12 78.2 107 44.9
CsaV3_3G035550 Cucumis sativus L. HOM05D003265 ORTHO05D003819 1.1e-11 76.6 237 30.0
Medtr7g100700 Medicago truncatula HOM05D003265 ORTHO05D003819 1.1e-11 76.6 671 23.7
FAN06G2521 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.5e-11 76.3 416 26.2
Lalb_Chr01g0019031 Lupinus albus HOM05D003265 ORTHO05D003819 1.9e-11 75.9 137 40.1
MELO3C009314.2 Cucumis melo HOM05D003265 ORTHO05D003819 2.5e-11 75.5 245 31.0
Thhalv10016413m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 3.3e-11 75.1 181 34.8
Gorai.002G250300 Gossypium raimondii HOM05D003265 ORTHO05D003819 5.7e-11 74.3 730 24.1
Phvul.001G174800 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 5.7e-11 74.3 740 24.6
FAN05G5644 Fragaria x ananassa HOM05D003265 ORTHO05D003819 7.4e-11 73.9 779 24.1
Gohir.D01G205900 Gossypium hirsutum HOM05D003265 ORTHO05D003819 7.4e-11 73.9 748 24.5
Sp4g19390 Schrenkiella parvula HOM05D003265 ORTHO05D003819 7.4e-11 73.9 181 35.4
MELO3C025500.2 Cucumis melo HOM05D003265 ORTHO05D003819 9.7e-11 73.6 350 27.4
Psat3g044800 Pisum sativum HOM05D003265 ORTHO05D003819 9.7e-11 73.6 121 43.0
DCAR_017729 Daucus carota HOM05D003265 ORTHO05D003819 1.3e-10 73.2 133 38.3
ECA246G3041 Erigeron canadensis HOM05D003265 ORTHO05D003819 1.6e-10 72.8 414 26.1
Medtr1g066870 Medicago truncatula HOM05D003265 ORTHO05D003819 1.6e-10 72.8 641 26.2
TWI38G2066 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 1.6e-10 72.8 436 24.3
MSTRG.10296 Avicennia marina HOM05D003265 ORTHO05D003819 2.8e-10 72.0 336 28.6
COL.COLO4_27082 Corchorus olitorius HOM05D003265 ORTHO05D003819 2.8e-10 72.0 896 22.9
HanXRQChr11g0350071 Helianthus annuus HOM05D003265 ORTHO05D003819 2.8e-10 72.0 340 27.1
Gohir.A01G217200 Gossypium hirsutum HOM05D003265 ORTHO05D003819 3.7e-10 71.6 740 24.2
Hma1.2p1_0111F.1_g053890 Hydrangea macrophylla HOM05D003265 ORTHO05D003819 3.7e-10 71.6 87 47.1
FvH4_6g15330 Fragaria vesca HOM05D003265 ORTHO05D003819 6.3e-10 70.9 780 23.7
GSVIVG01025625001 Vitis vinifera HOM05D003265 ORTHO05D003819 6.3e-10 70.9 274 28.5
RcHm_v2.0_Chr3g0468801 Rosa chinensis HOM05D003265 ORTHO05D003819 8.2e-10 70.5 739 22.3
ECA248G3421 Erigeron canadensis HOM05D002706 ORTHO05D003253 1.1e-09 70.1 258 30.2
VMungo0464G0131 Vigna mungo HOM05D003265 ORTHO05D003819 1.1e-09 70.1 344 26.7
Actinidia13105 Actinidia chinensis HOM05D003265 ORTHO05D003819 1.4e-09 69.7 340 30.6
FAN05G5023 Fragaria x ananassa HOM05D003265 ORTHO05D003819 1.4e-09 69.7 784 24.1
SGA_v2.0_scaffold35G14161 Striga asiatica HOM05D003265 ORTHO05D003819 1.4e-09 69.7 161 36.6
HanXRQChr09g0246531 Helianthus annuus HOM05D014857 ORTHO05D015078 1.8e-09 69.3 346 26.0
Oeu026844.1 Olea europaea HOM05D003265 ORTHO05D003819 1.8e-09 69.3 605 25.5
Psat6g070560 Pisum sativum HOM05D003265 ORTHO05D003819 1.8e-09 69.3 304 30.3
AUR62042920 Chenopodium quinoa HOM05D003265 ORTHO05D003819 2.4e-09 68.9 224 29.0
Gorai.006G168800 Gossypium raimondii HOM05D003265 ORTHO05D003819 2.4e-09 68.9 211 31.3
Sed0003387 Sechium edule HOM05D003265 ORTHO05D003819 3.1e-09 68.6 287 27.5
TPR.G36939 Trifolium pratense HOM05D003265 ORTHO05D003819 3.1e-09 68.6 402 27.6
Peaxi162Scf00005g04612 Petunia axillaris HOM05D003265 ORTHO05D003819 4.1e-09 68.2 229 31.9
THA.LOC104806495 Tarenaya hassleriana HOM05D003265 ORTHO05D003819 6.9e-09 67.4 139 38.8
BcaC07g39697 Brassica carinata HOM05D003265 ORTHO05D003819 9.0e-09 67.0 123 39.8
BolC8t50462H Brassica oleracea HOM05D003265 ORTHO05D003819 9.0e-09 67.0 123 39.8
Zm00001eb105840 Zea mays HOM05D003265 ORTHO05D003819 9.0e-09 67.0 95 40.0
SGA_v2.0_scaffold94G28667 Striga asiatica HOM05D003265 ORTHO05D003819 1.2e-08 66.6 180 35.6
BcaB01g00290 Brassica carinata HOM05D003265 ORTHO05D003819 1.5e-08 66.2 185 32.4
AUR62040021 Chenopodium quinoa HOM05D003265 ORTHO05D003819 2.0e-08 65.9 736 23.9
PGR004G1993 Punica granatum HOM05D000855 ORTHO05D002321 2.0e-08 65.9 195 33.3
Gohir.D09G147700 Gossypium hirsutum HOM05D003265 ORTHO05D003819 2.6e-08 65.5 211 30.8
Lsat_1_v5_gn_1_53881 Lactuca sativa HOM05D003265 ORTHO05D003819 2.6e-08 65.5 365 28.2
Nitab4.5_0001142g0090 Nicotiana tabacum HOM05D000855 ORTHO05D002321 2.6e-08 65.5 370 27.8
Os05g0121800 Oryza sativa ssp. japonica HOM05D003265 ORTHO05D003819 2.6e-08 65.5 136 33.1
Solyc06g005660.3 Solanum lycopersicum HOM05D014857 ORTHO05D015078 2.6e-08 65.5 409 27.1
TWI77G0315 Tripterygium wilfordii HOM05D003265 ORTHO05D003819 2.6e-08 65.5 619 24.7
Lj5g0012648 Lotus japonicus HOM05D003265 ORTHO05D003819 3.4e-08 65.1 121 44.6
Nitab4.5_0003895g0030 Nicotiana tabacum HOM05D000855 ORTHO05D002321 3.4e-08 65.1 372 27.2
Sp5g09010 Schrenkiella parvula HOM05D003265 ORTHO05D003819 3.4e-08 65.1 208 30.8
A09p46340 Brassica napus HOM05D003265 ORTHO05D003819 4.5e-08 64.7 123 39.0
Lsat_1_v5_gn_9_68001 Lactuca sativa HOM05D014857 ORTHO05D015078 4.5e-08 64.7 365 32.9
Lj1g0005050 Lotus japonicus HOM05D003265 ORTHO05D003819 4.5e-08 64.7 115 38.3
Phvul.004G075600 Phaseolus vulgaris HOM05D003265 ORTHO05D003819 4.5e-08 64.7 87 39.1
unitig_746.g26760 Utricularia gibba HOM05D003265 ORTHO05D003819 4.5e-08 64.7 97 42.3
Zm00001eb322540 Zea mays HOM05D003265 ORTHO05D003819 4.5e-08 64.7 162 34.0
SHI12573 Sapria himalayana HOM05D003265 ORTHO05D003819 5.9e-08 64.3 113 40.7
Solyc09g007340.4 Solanum lycopersicum HOM05D000855 ORTHO05D002321 5.9e-08 64.3 588 25.7
PGSC0003DMG400001737 Solanum tuberosum HOM05D003265 ORTHO05D003819 5.9e-08 64.3 700 23.7
Thhalv10010259m.g Eutrema salsugineum HOM05D003265 ORTHO05D003819 7.7e-08 63.9 190 31.1
QL01p036413 Quercus lobata HOM05D006507 ORTHO05D007296 7.7e-08 63.9 91 42.9
Carub.0005s1987 Capsella rubella HOM05D003265 ORTHO05D003819 1.0e-07 63.5 119 37.8
Sabra06G0103300 Salix brachista HOM05D003265 ORTHO05D003819 1.0e-07 63.5 200 32.5
Sopen09g002240 Solanum pennellii HOM05D003265 ORTHO05D003819 1.0e-07 63.5 588 25.2
AT3G53320 Arabidopsis thaliana HOM05D003265 ORTHO05D003819 1.3e-07 63.2 135 34.8
Cpa.g.sc114.39 Carica papaya HOM05D000666 ORTHO05D001431 1.3e-07 63.2 356 27.0
Aa31LG5G22370 Aethionema arabicum HOM05D003265 ORTHO05D003819 1.7e-07 62.8 109 38.5
EL10Ac7g17351 Beta vulgaris HOM05D003265 ORTHO05D003819 1.7e-07 62.8 184 31.0
C08p28530 Brassica napus HOM05D003265 ORTHO05D003819 1.7e-07 62.8 188 29.8
Lj2A107T58 Lonicera japonica HOM05D003265 ORTHO05D003819 1.7e-07 62.8 384 27.3
Oeu057239.1 Olea europaea HOM05D003265 ORTHO05D015078 1.7e-07 62.8 556 26.3
Lalb_Chr19g0129491 Lupinus albus HOM05D003265 ORTHO05D003819 2.2e-07 62.4 119 32.8
BcaB06g28974 Brassica carinata HOM05D003265 ORTHO05D003819 2.9e-07 62.0 179 33.0
CAN.G608.11 Capsicum annuum HOM05D003265 ORTHO05D003819 2.9e-07 62.0 309 28.8
CARHR163240 Cardamine hirsuta HOM05D003265 ORTHO05D003819 2.9e-07 62.0 114 40.4
TPR.G30247 Trifolium pratense HOM05D003265 ORTHO05D003819 2.9e-07 62.0 304 29.3
ECA246G0591 Erigeron canadensis HOM05D014857 ORTHO05D015078 3.8e-07 61.6 81 45.7
Potri.006G131650 Populus trichocarpa HOM05D003265 ORTHO05D003819 5.0e-07 61.2 299 35.8
Sopen06g001640 Solanum pennellii HOM05D014857 ORTHO05D015078 5.0e-07 61.2 396 26.8
SalBow4G0859 Salvia bowleyana HOM05D003265 ORTHO05D003819 6.5e-07 60.8 626 24.8
AL5G34230 Arabidopsis lyrata HOM05D003265 ORTHO05D003819 1.1e-06 60.1 167 32.9
BraA09t40099Z Brassica rapa HOM05D003265 ORTHO05D003819 1.1e-06 60.1 123 39.0
CDE04G0439 Ceratophyllum demersum HOM05D000106 ORTHO05D003819 1.1e-06 60.1 396 26.3
CDE07G1131 Ceratophyllum demersum HOM05D003265 ORTHO05D003819 1.4e-06 59.7 125 36.0
Cfa011382 Carpinus fangiana HOM05D006507 ORTHO05D007296 1.9e-06 59.3 93 41.9
Haze_23947 Corylus avellana HOM05D006507 ORTHO05D007296 3.2e-06 58.5 93 41.9
MD01G1131600 Malus domestica HOM05D003265 ORTHO05D003819 7.2e-06 57.4 210 29.0
Actinidia05272 Actinidia chinensis HOM05D003265 ORTHO05D003819 9.4e-06 57.0 79 39.2
SEGI_16529 Sequoiadendron giganteum HOM05D006507 ORTHO05D007296 9.4e-06 57.0 78 43.6


User provided reference genes

Program Settings