Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.5e-100 368.2 181 100.0
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.2e-92 343.2 181 91.2
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.2e-92 343.2 179 91.1
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.2e-92 343.2 179 91.1
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 1.0e-91 340.1 181 89.5
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.3e-91 339.7 181 90.1
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 2.3e-91 339.0 181 89.0
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 2.3e-91 339.0 179 91.1
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.0e-91 338.6 179 89.9
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 3.9e-91 338.2 179 92.7
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 5.1e-91 337.8 179 90.5
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 6.7e-91 337.4 181 89.0
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.1e-90 336.7 181 90.1
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.5e-90 336.3 179 89.9
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 1.5e-90 336.3 181 89.0
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.9e-90 335.9 181 91.7
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 7.4e-90 334.0 181 89.0
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.4e-90 334.0 179 88.3
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 9.7e-90 333.6 181 87.8
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.3e-89 333.2 179 88.3
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.3e-89 333.2 181 90.1
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 1.6e-89 332.8 179 89.9
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 2.2e-89 332.4 179 89.9
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.7e-89 331.6 179 87.7
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.8e-89 331.3 170 95.9
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 4.8e-89 331.3 181 87.3
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.1e-88 330.1 182 87.9
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.1e-88 330.1 181 86.2
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 3.1e-88 328.6 179 87.2
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 3.1e-88 328.6 179 86.6
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 4.1e-88 328.2 179 86.6
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 5.3e-88 327.8 181 86.2
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 6.9e-88 327.4 181 85.6
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 9.0e-88 327.0 181 87.3
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 9.0e-88 327.0 181 87.8
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 1.2e-87 326.6 180 87.2
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 2.0e-87 325.9 181 87.3
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 2.6e-87 325.5 176 87.5
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 3.4e-87 325.1 181 85.6
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.0e-86 323.6 181 86.7
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 2.2e-86 322.4 181 85.1
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 2.2e-86 322.4 179 84.4
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 2.2e-86 322.4 203 80.3
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 5.0e-86 321.2 181 84.5
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 6.5e-86 320.9 168 92.3
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 6.5e-86 320.9 176 86.9
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 6.5e-86 320.9 176 86.9
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 8.5e-86 320.5 181 86.2
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 8.5e-86 320.5 181 86.2
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.4e-85 319.7 167 92.8
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 1.9e-85 319.3 181 84.0
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 2.5e-85 318.9 181 85.1
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 4.2e-85 318.2 180 87.2
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 5.5e-85 317.8 175 87.4
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 5.5e-85 317.8 182 83.0
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 5.5e-85 317.8 176 86.4
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 7.2e-85 317.4 176 85.2
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.2e-84 316.6 179 81.0
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 1.2e-84 316.6 176 86.4
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 1.6e-84 316.2 179 81.0
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.6e-84 316.2 181 86.2
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 4.6e-84 314.7 180 86.1
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 7.9e-84 313.9 172 86.6
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 1.8e-83 312.8 172 86.0
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.8e-83 312.8 178 87.1
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 3.0e-83 312.0 173 85.5
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 3.9e-83 311.6 180 85.6
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 5.1e-83 311.2 173 85.5
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 5.1e-83 311.2 182 85.2
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.1e-82 310.1 176 81.8
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.1e-82 310.1 176 83.5
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-82 310.1 181 81.8
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.1e-82 310.1 177 82.5
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.5e-82 309.7 168 90.5
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 2.0e-82 309.3 177 81.9
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 2.5e-82 308.9 175 82.3
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 2.5e-82 308.9 178 86.5
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 3.3e-82 308.5 170 85.9
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 3.3e-82 308.5 177 82.5
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 4.3e-82 308.1 176 82.4
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 4.3e-82 308.1 180 84.4
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 5.7e-82 307.8 176 82.4
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 7.4e-82 307.4 176 82.4
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 7.4e-82 307.4 176 83.0
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 7.4e-82 307.4 176 83.0
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 9.7e-82 307.0 177 84.7
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 1.3e-81 306.6 176 82.4
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.3e-81 306.6 178 83.7
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 1.7e-81 306.2 179 83.8
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 2.2e-81 305.8 181 79.6
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.2e-81 305.8 181 80.7
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.2e-81 305.8 173 84.4
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 2.8e-81 305.4 169 85.8
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 3.7e-81 305.1 176 82.4
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 3.7e-81 305.1 176 82.4
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 4.8e-81 304.7 200 77.5
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 8.2e-81 303.9 179 81.0
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 1.1e-80 303.5 181 77.3
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 1.4e-80 303.1 183 81.4
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 1.8e-80 302.8 179 80.4
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 2.4e-80 302.4 177 81.4
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.4e-80 302.4 177 81.4
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 2.4e-80 302.4 177 81.4
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 3.1e-80 302.0 177 81.4
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 6.9e-80 300.8 177 80.8
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 1.2e-79 300.1 168 88.7
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 2.6e-79 298.9 177 80.8
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.4e-79 298.5 169 84.6
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 5.9e-79 297.7 182 81.9
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 5.9e-79 297.7 182 81.9
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 7.7e-79 297.4 166 84.3
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 8.5e-78 293.9 180 81.7
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 3.2e-77 292.0 161 87.0
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 7.2e-77 290.8 177 80.8
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 9.4e-77 290.4 181 80.1
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 9.4e-77 290.4 168 81.5
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.6e-76 289.7 181 79.6
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 1.6e-76 289.7 179 77.7
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 2.7e-76 288.9 168 82.1
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 7.9e-76 287.3 169 81.7
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 7.9e-76 287.3 168 80.4
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 3.0e-75 285.4 178 78.7
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.5e-74 283.1 253 62.1
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 3.7e-73 278.5 150 91.3
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 1.5e-71 273.1 168 79.2
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 7.7e-71 270.8 178 73.0
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.9e-69 266.2 182 71.4
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 9.4e-69 263.8 179 70.4
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 5.7e-66 254.6 148 83.8
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 7.4e-66 254.2 176 70.5
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.8e-65 252.3 179 73.7
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 1.3e-62 243.4 175 66.9
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.7e-62 243.0 169 67.5
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 2.0e-58 229.6 174 63.2
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 2.0e-50 203.0 134 73.9
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 1.7e-49 199.9 166 58.4
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.0e-46 190.7 172 60.5
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 3.8e-46 188.7 100 95.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.1e-40 168.7 102 84.3
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.6e-36 156.8 116 69.0
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.6e-31 140.2 80 83.8
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.1e-29 134.0 182 39.0
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 1.5e-29 133.7 169 40.8
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.1e-27 127.5 75 82.7
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.1e-27 127.5 75 82.7
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 1.1e-27 127.5 69 84.1
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.9e-24 116.7 57 93.0
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 1.6e-23 113.6 100 60.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.0e-22 109.4 54 94.4
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 3.3e-21 105.9 51 98.0
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.3e-19 99.8 165 35.8
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 4.0e-19 99.0 62 75.8
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 8.9e-19 97.8 55 81.8
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 2.6e-18 96.3 165 35.8
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 1.1e-13 80.9 90 48.9
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 1.8e-11 73.6 45 75.6
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 3.1e-11 72.8 51 70.6
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 4.0e-11 72.4 88 47.7
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 5.2e-11 72.0 37 89.2
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 5.8e-10 68.6 55 63.6
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 7.6e-10 68.2 38 86.8
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.4e-08 63.9 42 73.8
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 2.4e-08 63.2 50 62.0
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 4.2e-08 62.4 42 69.0
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 9.3e-08 61.2 38 73.7
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 9.3e-08 61.2 38 73.7
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 1.3e-06 57.4 43 65.1


User provided reference genes

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