Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047254 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 3.8e-64 248.1 128 100.0
CSS0020168 Camellia sinensis var. sinensis HOM05D005193 ORTHO05D006316 1.3e-53 213.0 121 92.6
Actinidia10743 Actinidia chinensis HOM05D005193 ORTHO05D006316 6.5e-32 141.0 205 44.9
TAR627G0707 Trochodendron aralioides HOM05D005193 ORTHO05D006316 1.1e-26 123.6 196 40.8
CiPaw.11G192300 Carya illinoinensis HOM05D005193 ORTHO05D006316 1.5e-25 119.8 205 40.0
QL08p009116 Quercus lobata HOM05D005193 ORTHO05D006316 1.7e-24 116.3 207 40.1
Dinv40781 Davidia involucrata HOM05D005193 ORTHO05D006316 2.2e-24 115.9 201 41.3
RhsimUnG0248800 Rhododendron simsii HOM05D005193 ORTHO05D006316 3.8e-24 115.2 152 45.4
Hma1.2p1_0036F.1_g023390 Hydrangea macrophylla HOM05D005193 ORTHO05D006316 5.0e-24 114.8 195 37.9
Duzib268G1225 Durio zibethinus HOM05D005193 ORTHO05D006316 1.5e-23 113.2 197 38.6
Gohir.D01G069100 Gossypium hirsutum HOM05D005193 ORTHO05D006316 3.2e-23 112.1 198 39.4
Thecc.07G032100 Theobroma cacao HOM05D005193 ORTHO05D006316 3.2e-23 112.1 191 39.3
vmacro09699 Vaccinium macrocarpon HOM05D005193 ORTHO05D006316 4.2e-23 111.7 138 47.1
GSVIVG01037690001 Vitis vinifera HOM05D005193 ORTHO05D006316 4.2e-23 111.7 198 39.9
Manes.15G068700 Manihot esculenta HOM05D005193 ORTHO05D006316 7.2e-23 110.9 198 37.9
Haze_09711 Corylus avellana HOM05D005193 ORTHO05D006316 1.6e-22 109.8 229 36.2
Gorai.002G091400 Gossypium raimondii HOM05D005193 ORTHO05D006316 2.7e-22 109.0 198 38.9
Gohir.A01G082500 Gossypium hirsutum HOM05D005193 ORTHO05D006316 3.6e-22 108.6 198 38.4
Nn1g03454 Nelumbo nucifera HOM05D005193 ORTHO05D006316 6.1e-22 107.8 187 38.5
Potri.001G356700 Populus trichocarpa HOM05D005193 ORTHO05D006316 3.0e-21 105.5 194 35.6
CANSAT11G2467 Cannabis sativa HOM05D005193 ORTHO05D006316 1.1e-20 103.6 198 34.3
Ciclev10007388m.g Citrus clementina HOM05D005193 ORTHO05D006316 1.5e-20 103.2 199 37.2
Atru.chr2.3490 Acer truncatum HOM05D005193 ORTHO05D006316 2.0e-20 102.8 198 35.4
MD03G1197400 Malus domestica HOM05D005193 ORTHO05D006316 3.3e-20 102.1 195 35.4
Prupe.4G218100 Prunus persica HOM05D005193 ORTHO05D006316 3.3e-20 102.1 188 38.8
Sabra16G0234700 Salix brachista HOM05D005193 ORTHO05D006316 3.3e-20 102.1 212 33.5
Lj1C877G15 Lonicera japonica HOM05D005193 ORTHO05D006316 9.7e-20 100.5 212 36.3
arahy.Tifrunner.gnm1.ann1.J5TE7C Arachis hypogaea HOM05D005193 ORTHO05D006316 1.7e-19 99.8 193 36.3
arahy.Tifrunner.gnm1.ann1.K04HM7 Arachis hypogaea HOM05D005193 ORTHO05D006316 1.7e-19 99.8 193 36.3
FAN21G2135 Fragaria x ananassa HOM05D005193 ORTHO05D006316 3.7e-19 98.6 192 35.9
RcHm_v2.0_Chr5g0040821 Rosa chinensis HOM05D005193 ORTHO05D006316 3.7e-19 98.6 193 35.2
Cc05_g14020 Coffea canephora HOM05D005193 ORTHO05D006316 4.8e-19 98.2 201 33.3
Sopen12g001090 Solanum pennellii HOM05D005193 ORTHO05D006316 6.3e-19 97.8 200 36.5
TPR.G2822 Trifolium pratense HOM05D005193 ORTHO05D006316 1.4e-18 96.7 193 35.2
FvH4_3g23170 Fragaria vesca HOM05D005193 ORTHO05D006316 1.8e-18 96.3 192 35.4
FAN11G0281 Fragaria x ananassa HOM05D005193 ORTHO05D006316 1.8e-18 96.3 192 35.4
Glyma.14G021300 Glycine max HOM05D005193 ORTHO05D006316 2.4e-18 95.9 202 35.6
Nitab4.5_0000168g0220 Nicotiana tabacum HOM05D005193 ORTHO05D006316 2.4e-18 95.9 124 46.8
Nitab4.5_0003450g0040 Nicotiana tabacum HOM05D005193 ORTHO05D006316 2.4e-18 95.9 119 46.2
TWI38G1184 Tripterygium wilfordii HOM05D005193 ORTHO05D006316 2.4e-18 95.9 192 33.3
COL.COLO4_09693 Corchorus olitorius HOM05D005193 ORTHO05D006316 4.1e-18 95.1 198 36.4
Cpa.g.sc12.274 Carica papaya HOM05D005193 ORTHO05D006316 5.3e-18 94.7 205 35.1
FAN16G1885 Fragaria x ananassa HOM05D005193 ORTHO05D006316 5.3e-18 94.7 192 34.9
FAN25G0346 Fragaria x ananassa HOM05D005193 ORTHO05D006316 5.3e-18 94.7 190 35.3
FAN25G2894 Fragaria x ananassa HOM05D005193 ORTHO05D006316 5.3e-18 94.7 190 35.3
Peaxi162Scf00660g00118 Petunia axillaris HOM05D005193 ORTHO05D006316 5.3e-18 94.7 200 35.0
Oeu041839.1 Olea europaea HOM05D005193 ORTHO05D006316 9.1e-18 94.0 200 33.0
VMungo0647G2043 Vigna mungo HOM05D005193 ORTHO05D006316 1.6e-17 93.2 202 34.7
LjContig00272g0004657 Lotus japonicus HOM05D005193 ORTHO05D006316 2.0e-17 92.8 193 35.8
Medtr1g056460 Medicago truncatula HOM05D005193 ORTHO05D006316 2.0e-17 92.8 192 34.4
Phvul.008G270200 Phaseolus vulgaris HOM05D005193 ORTHO05D006316 3.5e-17 92.0 203 34.5
Lsat_1_v5_gn_7_111080 Lactuca sativa HOM05D005193 ORTHO05D006316 4.5e-17 91.7 184 34.2
Aa31LG10G3620 Aethionema arabicum HOM05D005193 ORTHO05D006316 7.7e-17 90.9 190 33.2
BcaB07g33512 Brassica carinata HOM05D005193 ORTHO05D006316 7.7e-17 90.9 190 34.7
Psat6g078440 Pisum sativum HOM05D005193 ORTHO05D006316 1.3e-16 90.1 193 34.2
Carub.0001s3976 Capsella rubella HOM05D005193 ORTHO05D006316 2.2e-16 89.4 190 34.7
ECA236G2682 Erigeron canadensis HOM05D005193 ORTHO05D006316 2.2e-16 89.4 188 35.1
Hund02018 Selenicereus undatus HOM05D005193 ORTHO05D006316 2.2e-16 89.4 193 35.2
MBI07_g09089_MAGBIO Magnolia biondii HOM05D005193 ORTHO05D006316 2.9e-16 89.0 194 34.5
AT1G50730 Arabidopsis thaliana HOM05D005193 ORTHO05D006316 5.0e-16 88.2 190 34.2
Ca_11685_v3 Cicer arietinum L. HOM05D005193 ORTHO05D006316 1.1e-15 87.0 196 33.7
Sp1g37570 Schrenkiella parvula HOM05D005193 ORTHO05D006316 1.1e-15 87.0 170 34.7
BcaC08g43253 Brassica carinata HOM05D005193 ORTHO05D006316 1.9e-15 86.3 190 33.7
A06p02890 Brassica napus HOM05D005193 ORTHO05D006316 1.9e-15 86.3 191 34.0
BraA06t23495Z Brassica rapa HOM05D005193 ORTHO05D006316 1.9e-15 86.3 191 34.0
Lalb_Chr17g0348621 Lupinus albus HOM05D005193 ORTHO05D006316 1.9e-15 86.3 117 46.2
C06p05990 Brassica napus HOM05D005193 ORTHO05D006316 3.2e-15 85.5 195 33.3
BolC6t35712H Brassica oleracea HOM05D005193 ORTHO05D006316 3.2e-15 85.5 195 33.3
HanXRQChr11g0335911 Helianthus annuus HOM05D005193 ORTHO05D006316 5.5e-15 84.7 179 35.2
Aqoxy1G03394 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 1.2e-14 83.6 192 33.3
MELO3C013149.2 Cucumis melo HOM05D005193 ORTHO05D006316 4.7e-14 81.6 188 33.5
Thhalv10011218m.g Eutrema salsugineum HOM05D005193 ORTHO05D006316 4.7e-14 81.6 199 33.2
Aqoxy4G01697 Aquilegia oxysepala HOM05D005193 ORTHO05D006316 8.0e-14 80.9 192 32.8
ClCG09G010950 Citrullus lanatus HOM05D005193 ORTHO05D006316 1.8e-13 79.7 190 32.6
Eucgr.F03483 Eucalyptus grandis HOM05D005193 ORTHO05D006316 2.3e-13 79.3 185 32.4
CsaV3_7G021980 Cucumis sativus L. HOM05D005193 ORTHO05D006316 3.0e-13 79.0 188 32.4
Migut.M01736 Erythranthe guttata HOM05D005193 ORTHO05D006316 3.0e-13 79.0 202 30.7
CARHR040830 Cardamine hirsuta HOM05D005193 ORTHO05D006316 8.8e-13 77.4 168 32.7
THA.LOC104816145 Tarenaya hassleriana HOM05D005193 ORTHO05D006316 8.8e-13 77.4 190 32.6
Sed0015549 Sechium edule HOM05D005193 ORTHO05D006316 3.4e-12 75.5 185 31.9
MSTRG.6941 Avicennia marina HOM05D005193 ORTHO05D006316 4.4e-12 75.1 169 32.5
Ah.06g182590 Amaranthus hybridus HOM05D005193 ORTHO05D006316 9.8e-12 73.9 184 32.1
PSO210G7537 Papaver somniferum HOM05D005193 ORTHO05D006316 9.8e-12 73.9 194 30.9
arahy.Tifrunner.gnm1.ann1.6PV7EE Arachis hypogaea HOM05D005193 ORTHO05D006316 4.8e-11 71.6 62 59.7
PSO832G1529 Papaver somniferum HOM05D005193 ORTHO05D006316 2.4e-10 69.3 126 34.9
CAN.G1219.2 Capsicum annuum HOM05D005193 ORTHO05D006316 5.4e-10 68.2 62 53.2
PGR031G1204 Punica granatum HOM05D005193 ORTHO05D006316 1.6e-09 66.6 189 29.1
CDE02G0065 Ceratophyllum demersum HOM05D005193 ORTHO05D006316 2.0e-09 66.2 128 34.4
AUR62015822 Chenopodium quinoa HOM05D005193 ORTHO05D006316 1.1e-07 60.5 191 30.9
AUR62020399 Chenopodium quinoa HOM05D005193 ORTHO05D006316 7.2e-07 57.8 170 30.0


User provided reference genes

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