Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047250 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 5.2e-69 264.2 132 100.0
CSS0031703 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 4.6e-57 224.6 143 84.6
CSS0042031 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 4.6e-57 224.6 143 84.6
CSS0044553 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 5.6e-55 217.6 128 88.3
Actinidia13669 Actinidia chinensis HOM05D005032 ORTHO05D006268 7.4e-55 217.2 143 81.8
Rhsim12G0082300 Rhododendron simsii HOM05D005032 ORTHO05D006268 2.1e-54 215.7 143 80.4
ECA234G2686 Erigeron canadensis HOM05D005032 ORTHO05D006268 2.0e-52 209.1 143 78.3
Lj6A762T40 Lonicera japonica HOM05D005032 ORTHO05D006268 2.0e-52 209.1 143 78.3
Lj6A763T35 Lonicera japonica HOM05D005032 ORTHO05D006268 2.0e-52 209.1 143 78.3
vmacro01369 Vaccinium macrocarpon HOM05D005032 ORTHO05D006268 3.4e-52 208.4 143 78.3
HanXRQChr16g0529611 Helianthus annuus HOM05D005032 ORTHO05D006268 7.6e-52 207.2 143 76.9
Lsat_1_v5_gn_4_18881 Lactuca sativa HOM05D005032 ORTHO05D006268 1.7e-51 206.1 143 76.2
CSS0010323 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 2.2e-51 205.7 143 76.9
CSS0024978 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 2.2e-51 205.7 143 76.9
Lsat_1_v5_gn_3_59981 Lactuca sativa HOM05D005032 ORTHO05D006268 4.9e-51 204.5 143 75.5
DCAR_026721 Daucus carota HOM05D005032 ORTHO05D006268 6.4e-51 204.1 143 76.9
Dinv21116 Davidia involucrata HOM05D005032 ORTHO05D006268 1.4e-50 203.0 143 77.6
HanXRQChr17g0552231 Helianthus annuus HOM05D005032 ORTHO05D006268 1.9e-50 202.6 143 76.2
ECA246G3837 Erigeron canadensis HOM05D005032 ORTHO05D006268 2.4e-50 202.2 143 76.9
arahy.Tifrunner.gnm1.ann1.HPX6PX Arachis hypogaea HOM05D005032 ORTHO05D006268 7.1e-50 200.7 143 76.9
CSS0021499 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 9.3e-50 200.3 142 79.6
Atru.chr11.1329 Acer truncatum HOM05D005032 ORTHO05D006268 1.6e-49 199.5 143 76.2
arahy.Tifrunner.gnm1.ann1.WF5P9Q Arachis hypogaea HOM05D005032 ORTHO05D006268 2.1e-49 199.1 143 76.2
Lj5g0015640 Lotus japonicus HOM05D005032 ORTHO05D006268 3.5e-49 198.4 143 76.2
Gohir.A13G053540 Gossypium hirsutum HOM05D005032 ORTHO05D006268 6.0e-49 197.6 143 75.5
VMungo0720G2532 Vigna mungo HOM05D005032 ORTHO05D006268 7.9e-49 197.2 143 74.1
Glyma.10G276200 Glycine max HOM05D005032 ORTHO05D006268 1.0e-48 196.8 143 74.1
Phvul.007G025400 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 1.0e-48 196.8 143 73.4
TAR374G1139 Trochodendron aralioides HOM05D005032 ORTHO05D006268 1.0e-48 196.8 143 74.8
AUR62002904 Chenopodium quinoa HOM05D005032 ORTHO05D006268 1.3e-48 196.4 143 74.1
AUR62035263 Chenopodium quinoa HOM05D005032 ORTHO05D006268 1.3e-48 196.4 143 74.1
Sc04g0004960 Simmondsia chinensis HOM05D005032 ORTHO05D006268 1.8e-48 196.1 143 74.1
Gohir.D13G070800 Gossypium hirsutum HOM05D005032 ORTHO05D006268 2.3e-48 195.7 143 74.8
Gorai.013G081000 Gossypium raimondii HOM05D005032 ORTHO05D006268 2.3e-48 195.7 143 74.8
MD13G1044800 Malus domestica HOM05D005032 ORTHO05D006268 2.3e-48 195.7 143 74.1
MD16G1046200 Malus domestica HOM05D005032 ORTHO05D006268 2.3e-48 195.7 143 74.1
RcHm_v2.0_Chr4g0435621 Rosa chinensis HOM05D005032 ORTHO05D006268 2.3e-48 195.7 143 74.8
GSVIVG01011930001 Vitis vinifera HOM05D005032 ORTHO05D006268 2.3e-48 195.7 143 74.1
FvH4_4g27760 Fragaria vesca HOM05D005032 ORTHO05D006268 5.1e-48 194.5 143 74.1
FAN12G2852 Fragaria x ananassa HOM05D005032 ORTHO05D006268 5.1e-48 194.5 143 74.1
Cc00_g17470 Coffea canephora HOM05D005032 ORTHO05D006268 6.7e-48 194.1 143 72.7
Haze_17453 Corylus avellana HOM05D005032 ORTHO05D006268 6.7e-48 194.1 143 74.8
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 6.7e-48 194.1 143 73.4
MBI13_g09687_MAGBIO Magnolia biondii HOM05D005032 ORTHO05D006268 8.7e-48 193.7 143 72.7
Manes.14G099000 Manihot esculenta HOM05D005032 ORTHO05D006268 8.7e-48 193.7 143 74.1
Thecc.02G359100 Theobroma cacao HOM05D005032 ORTHO05D006268 8.7e-48 193.7 143 73.4
Cfa018616 Carpinus fangiana HOM05D005032 ORTHO05D006268 1.1e-47 193.4 143 74.8
Glyma.20G113500 Glycine max HOM05D005032 ORTHO05D006268 1.1e-47 193.4 143 72.0
Medtr1g111330 Medicago truncatula HOM05D005032 ORTHO05D006268 1.1e-47 193.4 143 73.4
FAN07G0299 Fragaria x ananassa HOM05D005032 ORTHO05D006268 1.5e-47 193.0 143 73.4
FAN22G0537 Fragaria x ananassa HOM05D005032 ORTHO05D006268 1.9e-47 192.6 143 73.4
Potri.008G118200 Populus trichocarpa HOM05D005032 ORTHO05D006268 2.5e-47 192.2 143 73.4
Psat6g229600 Pisum sativum HOM05D005032 ORTHO05D006268 3.3e-47 191.8 143 72.7
TPR.G26307 Trifolium pratense HOM05D005032 ORTHO05D006268 3.3e-47 191.8 143 72.7
EL10Ac6g14461 Beta vulgaris HOM05D005032 ORTHO05D006268 4.3e-47 191.4 143 73.4
Ca_11190_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 5.6e-47 191.0 143 72.7
Nn3g17775 Nelumbo nucifera HOM05D005032 ORTHO05D006268 7.4e-47 190.7 141 73.8
Gohir.A12G169300 Gossypium hirsutum HOM05D005032 ORTHO05D006268 9.6e-47 190.3 143 73.4
Gohir.D12G172600 Gossypium hirsutum HOM05D005032 ORTHO05D006268 9.6e-47 190.3 143 73.4
Hund25090 Selenicereus undatus HOM05D005032 ORTHO05D006268 1.3e-46 189.9 143 73.4
TWI79G0027 Tripterygium wilfordii HOM05D005032 ORTHO05D006268 1.6e-46 189.5 143 71.3
Gorai.008G185100 Gossypium raimondii HOM05D005032 ORTHO05D006268 2.1e-46 189.1 143 72.7
Sabra08G0089600 Salix brachista HOM05D005032 ORTHO05D006268 2.1e-46 189.1 143 72.7
PSO782G1090 Papaver somniferum HOM05D005032 ORTHO05D006268 2.8e-46 188.7 143 69.9
Lalb_Chr02g0146101 Lupinus albus HOM05D005032 ORTHO05D006268 3.7e-46 188.3 143 72.7
Potri.010G128100 Populus trichocarpa HOM05D005032 ORTHO05D006268 3.7e-46 188.3 143 72.7
PGR102G0428 Punica granatum HOM05D005032 ORTHO05D006268 3.7e-46 188.3 143 71.3
QL01p044542 Quercus lobata HOM05D005032 ORTHO05D006268 3.7e-46 188.3 143 72.0
Migut.E00317 Erythranthe guttata HOM05D005032 ORTHO05D006268 6.2e-46 187.6 143 70.6
CiPaw.15G004700 Carya illinoinensis HOM05D005032 ORTHO05D006268 1.1e-45 186.8 143 73.4
Nitab4.5_0000672g0140 Nicotiana tabacum HOM05D005032 ORTHO05D006268 1.1e-45 186.8 143 70.6
PSO063G0757 Papaver somniferum HOM05D005032 ORTHO05D006268 1.1e-45 186.8 143 69.2
CDE05G1095 Ceratophyllum demersum HOM05D005032 ORTHO05D006268 1.8e-45 186.0 143 69.9
Nitab4.5_0003642g0010 Nicotiana tabacum HOM05D005032 ORTHO05D006268 1.8e-45 186.0 143 70.6
Glyma.01G084500 Glycine max HOM05D005032 ORTHO05D006268 2.4e-45 185.7 143 69.9
THA.LOC104808234 Tarenaya hassleriana HOM05D005032 ORTHO05D006268 3.1e-45 185.3 144 72.2
CAN.G656.42 Capsicum annuum HOM05D005032 ORTHO05D006268 4.0e-45 184.9 143 72.0
Lalb_Chr17g0341981 Lupinus albus HOM05D005032 ORTHO05D006268 4.0e-45 184.9 143 67.8
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 4.0e-45 184.9 143 71.3
Lj2g0024967 Lotus japonicus HOM05D005032 ORTHO05D006268 5.3e-45 184.5 143 70.6
Sopen05g005490 Solanum pennellii HOM05D005032 ORTHO05D006268 5.3e-45 184.5 143 70.6
Ciclev10031322m.g Citrus clementina HOM05D005032 ORTHO05D006268 6.9e-45 184.1 143 69.9
Medtr5g054780 Medicago truncatula HOM05D005032 ORTHO05D006268 6.9e-45 184.1 143 71.3
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 6.9e-45 184.1 143 70.6
Sabra10G0097300 Salix brachista HOM05D005032 ORTHO05D006268 2.0e-44 182.6 143 69.2
TPR.G38289 Trifolium pratense HOM05D005032 ORTHO05D006268 2.6e-44 182.2 143 69.2
CANSAT64G1793 Cannabis sativa HOM05D005032 ORTHO05D006268 4.5e-44 181.4 144 71.5
Eucgr.B03034 Eucalyptus grandis HOM05D005032 ORTHO05D006268 4.5e-44 181.4 143 67.8
Prupe.1G307200 Prunus persica HOM05D005032 ORTHO05D006268 5.8e-44 181.0 133 73.7
Aqoxy3G03931 Aquilegia oxysepala HOM05D005032 ORTHO05D006268 7.6e-44 180.6 147 67.3
SalBow8G5398 Salvia bowleyana HOM05D005032 ORTHO05D006268 7.6e-44 180.6 143 69.9
PGSC0003DMG402012961 Solanum tuberosum HOM05D005032 ORTHO05D006268 7.6e-44 180.6 143 69.9
MELO3C012225.2 Cucumis melo HOM05D005032 ORTHO05D006268 1.0e-43 180.3 141 68.8
CsaV3_5G034080 Cucumis sativus L. HOM05D005032 ORTHO05D006268 1.0e-43 180.3 141 68.8
SEGI_10382 Sequoiadendron giganteum HOM05D005032 ORTHO05D006268 1.0e-43 180.3 143 67.1
Solyc05g009670.3 Solanum lycopersicum HOM05D005032 ORTHO05D006268 1.0e-43 180.3 143 69.9
MSTRG.2252 Avicennia marina HOM05D005032 ORTHO05D006268 1.3e-43 179.9 143 69.2
Sed0015336 Sechium edule HOM05D005032 ORTHO05D006268 1.7e-43 179.5 141 68.8
Os02g0580100 Oryza sativa ssp. japonica HOM05D005032 ORTHO05D006268 4.9e-43 177.9 143 66.4
ClCG05G022930 Citrullus lanatus HOM05D005032 ORTHO05D006268 6.5e-43 177.6 141 67.4
Psat2g101480 Pisum sativum HOM05D005032 ORTHO05D006268 8.4e-43 177.2 143 68.5
Peaxi162Scf00380g00811 Petunia axillaris HOM05D005032 ORTHO05D006268 1.9e-42 176.0 146 68.5
ATR0097G002 Amborella trichopoda HOM05D005032 ORTHO05D006268 2.5e-42 175.6 143 65.7
CiPaw.16G004100 Carya illinoinensis HOM05D005032 ORTHO05D006268 5.5e-42 174.5 143 69.2
Ah.03g137830 Amaranthus hybridus HOM05D005032 ORTHO05D006268 2.7e-41 172.2 133 70.7
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 3.5e-41 171.8 143 64.3
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 7.9e-41 170.6 143 66.4
Aa31LG7G9000 Aethionema arabicum HOM05D005032 ORTHO05D006268 1.0e-40 170.2 145 66.9
Zm00001eb245170 Zea mays HOM05D005032 ORTHO05D006268 1.0e-40 170.2 143 65.0
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 1.3e-40 169.9 143 63.6
AT1G25500 Arabidopsis thaliana HOM05D005032 ORTHO05D006268 3.0e-40 168.7 144 66.7
Duzib248G0180 Durio zibethinus HOM05D005032 ORTHO05D006268 3.9e-40 168.3 133 70.7
Thhalv10007483m.g Eutrema salsugineum HOM05D005032 ORTHO05D006268 1.1e-39 166.8 144 66.7
CARHR025960 Cardamine hirsuta HOM05D005032 ORTHO05D006268 2.5e-39 165.6 144 66.0
Sp1g22710 Schrenkiella parvula HOM05D005032 ORTHO05D006268 5.7e-39 164.5 144 64.6
Carub.0001s2498 Capsella rubella HOM05D005032 ORTHO05D006268 2.2e-38 162.5 144 63.9
AL1G39800 Arabidopsis lyrata HOM05D005032 ORTHO05D006268 2.8e-38 162.2 149 64.4
A08p27010 Brassica napus HOM05D005032 ORTHO05D006268 8.2e-38 160.6 144 63.9
C03p72880 Brassica napus HOM05D005032 ORTHO05D006268 8.2e-38 160.6 144 63.9
BolC3t19586H Brassica oleracea HOM05D005032 ORTHO05D006268 8.2e-38 160.6 144 63.9
BraA08t34647Z Brassica rapa HOM05D005032 ORTHO05D006268 8.2e-38 160.6 144 63.9
Actinidia38384 Actinidia chinensis HOM05D005032 ORTHO05D006268 6.9e-37 157.5 146 67.8
HPP92_006145 Vanilla planifolia HOM05D005032 ORTHO05D006268 1.3e-35 153.3 133 62.4
unitig_699.g19492 Utricularia gibba HOM05D005032 ORTHO05D006268 1.9e-34 149.4 143 59.4
Mapoly0004s0207 Marchantia polymorpha HOM05D005032 ORTHO05D006268 2.8e-30 135.6 141 49.6
SMO165G0124 Selaginella moellendorffii HOM05D005032 ORTHO05D006268 8.2e-30 134.0 141 51.8
Oeu004599.1 Olea europaea HOM05D005032 ORTHO05D006268 1.6e-25 119.8 143 53.1
BcaB03g12017 Brassica carinata HOM05D005032 ORTHO05D006268 1.4e-16 90.1 87 62.1
BcaC01g01701 Brassica carinata HOM05D005032 ORTHO05D006268 1.4e-16 90.1 88 61.4
COL.COLO4_07886 Corchorus olitorius HOM05D005032 ORTHO05D006268 1.1e-15 87.0 139 45.3
BcaB03g14048 Brassica carinata HOM05D005032 ORTHO05D006268 6.3e-14 81.3 87 58.6
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 1.8e-13 79.7 101 40.6
BcaC01g01716 Brassica carinata HOM05D005032 ORTHO05D006268 3.5e-12 75.5 57 66.7


User provided reference genes

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