Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047245 Camellia sinensis var. sinensis HOM05D001412 ORTHO05D028414 7.2e-40 166.8 83 100.0
CSS0042918 Camellia sinensis var. sinensis HOM05D001412 ORTHO05D002473 2.2e-17 92.0 61 80.3
CSS0044456 Camellia sinensis var. sinensis HOM05D001412 ORTHO05D002473 2.2e-17 92.0 61 80.3
Gohir.A13G193100 Gossypium hirsutum HOM05D001412 ORTHO05D002473 2.9e-17 91.7 61 80.3
Gohir.D06G072000 Gossypium hirsutum HOM05D001412 ORTHO05D002473 2.9e-17 91.7 61 80.3
Gorai.010G084000 Gossypium raimondii HOM05D001412 ORTHO05D002473 2.9e-17 91.7 61 80.3
Gorai.013G227300 Gossypium raimondii HOM05D001412 ORTHO05D002473 2.9e-17 91.7 61 80.3
Rhsim05G0018500 Rhododendron simsii HOM05D001412 ORTHO05D002473 2.9e-17 91.7 61 80.3
SGA_v2.0_scaffold23G10029 Striga asiatica HOM05D001412 ORTHO05D002473 3.8e-17 91.3 44 97.7
vmacro17255 Vaccinium macrocarpon HOM05D001412 ORTHO05D002473 3.8e-17 91.3 61 78.7
Gohir.A06G073300 Gossypium hirsutum HOM05D001412 ORTHO05D002473 5.0e-17 90.9 61 78.7
Actinidia29907 Actinidia chinensis HOM05D001412 ORTHO05D002473 8.5e-17 90.1 44 95.5
Actinidia38452 Actinidia chinensis HOM05D001412 ORTHO05D002473 8.5e-17 90.1 44 95.5
Gohir.D13G198400 Gossypium hirsutum HOM05D001412 ORTHO05D002473 8.5e-17 90.1 60 80.0
Sabra18G0059500 Salix brachista HOM05D001412 ORTHO05D002473 1.5e-16 89.4 50 86.0
TAR622G0136 Trochodendron aralioides HOM05D005263 ORTHO05D006891 1.5e-16 89.4 61 77.0
Ciclev10008716m.g Citrus clementina HOM05D001412 ORTHO05D002473 1.9e-16 89.0 44 95.5
DCAR_011966 Daucus carota HOM05D001412 ORTHO05D002473 1.9e-16 89.0 44 95.5
Potri.006G148700 Populus trichocarpa HOM05D001412 ORTHO05D002473 2.5e-16 88.6 44 93.2
Potri.018G067900 Populus trichocarpa HOM05D001412 ORTHO05D002473 2.5e-16 88.6 44 93.2
Sabra06G0117600 Salix brachista HOM05D001412 ORTHO05D002473 2.5e-16 88.6 44 93.2
Ah.14g085150 Amaranthus hybridus HOM05D001412 ORTHO05D002473 4.2e-16 87.8 61 77.0
AUR62029049 Chenopodium quinoa HOM05D001412 ORTHO05D002473 4.2e-16 87.8 61 75.4
AUR62033945 Chenopodium quinoa HOM05D001412 ORTHO05D002473 5.5e-16 87.4 61 73.8
EL10Ac8g19189 Beta vulgaris HOM05D001412 ORTHO05D002473 9.4e-16 86.7 62 77.4
Hma1.2p1_0672F.1_g201100 Hydrangea macrophylla HOM05D001412 ORTHO05D002473 9.4e-16 86.7 45 95.6
Thecc.09G087100 Theobroma cacao HOM05D001412 ORTHO05D002473 9.4e-16 86.7 62 79.0
Aa31LG8G16510 Aethionema arabicum HOM05D001412 ORTHO05D002473 1.2e-15 86.3 44 90.9
Dinv36777 Davidia involucrata HOM05D001412 ORTHO05D002473 1.6e-15 85.9 62 77.4
Cfa003069 Carpinus fangiana HOM05D001412 ORTHO05D002473 2.1e-15 85.5 45 95.6
Hma1.2p1_1838F.1_g304850 Hydrangea macrophylla HOM05D001412 ORTHO05D002473 2.1e-15 85.5 62 77.4
Lj4A294T56 Lonicera japonica HOM05D001412 ORTHO05D002473 2.1e-15 85.5 62 77.4
PGR142G2286 Punica granatum HOM05D001412 ORTHO05D002473 2.7e-15 85.1 45 91.1
MSTRG.19504 Avicennia marina HOM05D001412 ORTHO05D002473 3.6e-15 84.7 45 91.1
BcaC07g41250 Brassica carinata HOM05D001412 ORTHO05D002473 3.6e-15 84.7 45 93.3
CiPaw.03G214000 Carya illinoinensis HOM05D001412 ORTHO05D002473 3.6e-15 84.7 61 75.4
Haze_25926 Corylus avellana HOM05D001412 ORTHO05D002473 3.6e-15 84.7 62 77.4
Thhalv10022701m.g Eutrema salsugineum HOM05D001412 ORTHO05D002473 3.6e-15 84.7 45 93.3
Manes.16G100900 Manihot esculenta HOM05D001412 ORTHO05D002473 3.6e-15 84.7 44 84.1
GSVIVG01015188001 Vitis vinifera HOM05D001412 ORTHO05D002473 3.6e-15 84.7 62 77.4
Dinv42330 Davidia involucrata HOM05D001412 ORTHO05D002473 4.7e-15 84.3 62 75.8
MD02G1081700 Malus domestica HOM05D001412 ORTHO05D002473 4.7e-15 84.3 45 93.3
MD15G1209000 Malus domestica HOM05D001412 ORTHO05D002473 4.7e-15 84.3 45 93.3
TWI63G0787 Tripterygium wilfordii HOM05D001412 ORTHO05D002473 4.7e-15 84.3 45 93.3
Duzib150G1378 Durio zibethinus HOM05D001412 ORTHO05D002473 6.1e-15 84.0 62 75.8
QL02p062340 Quercus lobata HOM05D001412 ORTHO05D002473 6.1e-15 84.0 62 74.2
Aqoxy5G03005 Aquilegia oxysepala HOM05D001412 ORTHO05D002473 8.0e-15 83.6 44 88.6
arahy.Tifrunner.gnm1.ann1.D3QW6U Arachis hypogaea HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
arahy.Tifrunner.gnm1.ann1.K2HVP1 Arachis hypogaea HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
BcaB03g16735 Brassica carinata HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
BcaC06g36589 Brassica carinata HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
A07p01290 Brassica napus HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
A09p59300 Brassica napus HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
C07p02580 Brassica napus HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
C08p42560 Brassica napus HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
BolC7t40656H Brassica oleracea HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
BolC8t51817H Brassica oleracea HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
BraA07t27919Z Brassica rapa HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
BraA09t41312Z Brassica rapa HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 91.1
Rhsim03G0231500 Rhododendron simsii HOM05D001412 ORTHO05D002473 8.0e-15 83.6 45 93.3
Zm00001eb144420 Zea mays HOM05D001412 ORTHO05D002473 8.0e-15 83.6 44 88.6
BcaB08g34868 Brassica carinata HOM05D001412 ORTHO05D002473 1.0e-14 83.2 45 91.1
ClCG11G001720 Citrullus lanatus HOM05D001412 ORTHO05D002473 1.0e-14 83.2 45 91.1
HanXRQChr06g0178581 Helianthus annuus HOM05D001412 ORTHO05D002473 1.0e-14 83.2 61 70.5
Sed0016179 Sechium edule HOM05D001412 ORTHO05D002473 1.0e-14 83.2 45 91.1
TAR629G0305 Trochodendron aralioides HOM05D001412 ORTHO05D002473 1.0e-14 83.2 62 75.8
Lsat_1_v5_gn_8_86900 Lactuca sativa HOM05D001412 ORTHO05D002473 1.4e-14 82.8 61 70.5
Peaxi162Scf00028g00412 Petunia axillaris HOM05D001412 ORTHO05D002473 1.4e-14 82.8 62 74.2
VMungo1215G0238 Vigna mungo HOM05D001412 ORTHO05D002473 1.4e-14 82.8 64 71.9
CiPaw.04G148400 Carya illinoinensis HOM05D001412 ORTHO05D002473 1.8e-14 82.4 62 72.6
Migut.L01503 Erythranthe guttata HOM05D001412 ORTHO05D002473 1.8e-14 82.4 62 74.2
Oeu017605.1 Olea europaea HOM05D001412 ORTHO05D002473 1.8e-14 82.4 45 91.1
RcHm_v2.0_Chr2g0093621 Rosa chinensis HOM05D001412 ORTHO05D002473 1.8e-14 82.4 45 88.9
Hund06670 Selenicereus undatus HOM05D001412 ORTHO05D002473 1.8e-14 82.4 62 74.2
Cc06_g11530 Coffea canephora HOM05D001412 ORTHO05D002473 2.3e-14 82.0 44 86.4
DCAR_024711 Daucus carota HOM05D001412 ORTHO05D001460 2.3e-14 82.0 61 72.1
Lj6g0021045 Lotus japonicus HOM05D001412 ORTHO05D002473 2.3e-14 82.0 51 76.5
Lalb_Chr08g0232301 Lupinus albus HOM05D001412 ORTHO05D002473 2.3e-14 82.0 45 86.7
PGSC0003DMG400023358 Solanum tuberosum HOM05D001412 ORTHO05D002473 2.3e-14 82.0 64 73.4
unitig_578.g16417 Utricularia gibba HOM05D001412 ORTHO05D002473 2.3e-14 82.0 62 74.2
AL3G48760 Arabidopsis lyrata HOM05D001412 ORTHO05D002473 3.0e-14 81.6 45 86.7
AT2G19490 Arabidopsis thaliana HOM05D001412 ORTHO05D002473 3.0e-14 81.6 45 86.7
Carub.0003s3378 Capsella rubella HOM05D001412 ORTHO05D002473 3.0e-14 81.6 45 86.7
CAN.G694.21 Capsicum annuum HOM05D001412 ORTHO05D002473 3.0e-14 81.6 62 74.2
CARHR109930 Cardamine hirsuta HOM05D001412 ORTHO05D002473 3.0e-14 81.6 45 86.7
Migut.J00582 Erythranthe guttata HOM05D001412 ORTHO05D002473 3.0e-14 81.6 45 86.7
Eucgr.C03475 Eucalyptus grandis HOM05D001412 ORTHO05D002473 3.0e-14 81.6 45 84.4
HanXRQChr04g0126181 Helianthus annuus HOM05D001412 ORTHO05D002473 3.0e-14 81.6 61 68.9
Oeu006023.1 Olea europaea HOM05D001412 ORTHO05D002473 3.0e-14 81.6 48 83.3
Sp3g32870 Schrenkiella parvula HOM05D001412 ORTHO05D002473 3.0e-14 81.6 45 86.7
Actinidia25245 Actinidia chinensis HOM05D001412 ORTHO05D002473 4.0e-14 81.3 62 72.6
MSTRG.10553 Avicennia marina HOM05D001412 ORTHO05D002473 4.0e-14 81.3 45 91.1
COL.COLO4_18188 Corchorus olitorius HOM05D001412 ORTHO05D002473 4.0e-14 81.3 45 88.9
Gohir.A11G136200 Gossypium hirsutum HOM05D001412 ORTHO05D002473 4.0e-14 81.3 61 73.8
TPR.G9470 Trifolium pratense HOM05D001412 ORTHO05D002473 4.0e-14 81.3 62 71.0
Eucgr.C00874 Eucalyptus grandis HOM05D001412 ORTHO05D002473 5.2e-14 80.9 45 86.7
Gohir.A12G037500 Gossypium hirsutum HOM05D001412 ORTHO05D002473 5.2e-14 80.9 61 73.8
Manes.03G031097 Manihot esculenta HOM05D001412 ORTHO05D002473 5.2e-14 80.9 45 84.4
Medtr4g126040 Medicago truncatula HOM05D001412 ORTHO05D002473 5.2e-14 80.9 62 69.4
Prupe.7G207400 Prunus persica HOM05D001412 ORTHO05D002473 5.2e-14 80.9 45 86.7
Sed0000909 Sechium edule HOM05D001412 ORTHO05D002473 5.2e-14 80.9 45 86.7
THA.LOC104814625 Tarenaya hassleriana HOM05D001412 ORTHO05D002473 5.2e-14 80.9 45 88.9
arahy.Tifrunner.gnm1.ann1.HY2LYN Arachis hypogaea HOM05D001412 ORTHO05D002473 6.8e-14 80.5 62 72.6
arahy.Tifrunner.gnm1.ann1.Y11TJZ Arachis hypogaea HOM05D001412 ORTHO05D002473 6.8e-14 80.5 62 72.6
Ca_02171_v3 Cicer arietinum L. HOM05D001412 ORTHO05D002473 6.8e-14 80.5 62 71.0
Ca_21284_v3 Cicer arietinum L. HOM05D001412 ORTHO05D002473 6.8e-14 80.5 66 68.2
Lj4g0010593 Lotus japonicus HOM05D001412 ORTHO05D002473 6.8e-14 80.5 62 71.0
Lalb_Chr07g0180891 Lupinus albus HOM05D001412 ORTHO05D002473 6.8e-14 80.5 62 71.0
Phvul.003G135600 Phaseolus vulgaris HOM05D001412 ORTHO05D002473 6.8e-14 80.5 62 71.0
Phvul.009G231500 Phaseolus vulgaris HOM05D001412 ORTHO05D002473 6.8e-14 80.5 62 71.0
SHI05040 Sapria himalayana HOM05D001412 ORTHO05D002473 6.8e-14 80.5 45 88.9
VMungo1309G0772 Vigna mungo HOM05D001412 ORTHO05D002473 6.8e-14 80.5 62 71.0
MBI07_g07552_MAGBIO Magnolia biondii HOM05D001412 ORTHO05D002473 8.8e-14 80.1 62 74.2
Medtr2g039670 Medicago truncatula HOM05D001412 ORTHO05D002473 8.8e-14 80.1 62 69.4
Nitab4.5_0006126g0010 Nicotiana tabacum HOM05D001412 ORTHO05D002473 8.8e-14 80.1 62 72.6
Solyc05g055780.4 Solanum lycopersicum HOM05D001412 ORTHO05D002473 8.8e-14 80.1 62 72.6
Sopen05g034190 Solanum pennellii HOM05D001412 ORTHO05D002473 8.8e-14 80.1 62 72.6
TWI32G1321 Tripterygium wilfordii HOM05D001412 ORTHO05D002473 8.8e-14 80.1 62 71.0
FvH4_1g07730 Fragaria vesca HOM05D001412 ORTHO05D002473 1.2e-13 79.7 45 86.7
FAN19G1811 Fragaria x ananassa HOM05D001412 ORTHO05D002473 1.2e-13 79.7 45 86.7
FAN23G2148 Fragaria x ananassa HOM05D001412 ORTHO05D002473 1.2e-13 79.7 45 86.7
FAN26G1529 Fragaria x ananassa HOM05D001412 ORTHO05D002473 1.2e-13 79.7 45 86.7
FAN26G1795 Fragaria x ananassa HOM05D001412 ORTHO05D002473 1.2e-13 79.7 45 86.7
FAN28G0937 Fragaria x ananassa HOM05D001412 ORTHO05D002473 1.2e-13 79.7 45 86.7
Manes.03G035200 Manihot esculenta HOM05D001412 ORTHO05D002473 1.2e-13 79.7 45 86.7
TPR.G13421 Trifolium pratense HOM05D001412 ORTHO05D002473 1.2e-13 79.7 62 69.4
HPP92_002720 Vanilla planifolia HOM05D001412 ORTHO05D002473 1.2e-13 79.7 62 75.8
ATR0582G297 Amborella trichopoda HOM05D001412 ORTHO05D002473 1.5e-13 79.3 62 72.6
Glyma.09G064300 Glycine max HOM05D001412 ORTHO05D002473 1.5e-13 79.3 62 69.4
Glyma.15G170600 Glycine max HOM05D001412 ORTHO05D002473 1.5e-13 79.3 62 69.4
Nn3g16219 Nelumbo nucifera HOM05D001412 ORTHO05D002473 1.5e-13 79.3 62 74.2
Zm00001eb365600 Zea mays HOM05D001412 ORTHO05D002473 1.5e-13 79.3 44 81.8
MELO3C031352.2 Cucumis melo HOM05D001412 ORTHO05D002473 2.0e-13 79.0 44 79.5
CsaV3_2G001420 Cucumis sativus L. HOM05D001412 ORTHO05D002473 2.6e-13 78.6 44 79.5
ECA236G3807 Erigeron canadensis HOM05D001412 ORTHO05D002473 2.6e-13 78.6 62 69.4
Glyma.17G053900 Glycine max HOM05D001412 ORTHO05D002473 2.6e-13 78.6 62 69.4
Psat1g140080 Pisum sativum HOM05D001412 ORTHO05D002473 2.6e-13 78.6 62 67.7
Sc14g0000710 Simmondsia chinensis HOM05D001412 ORTHO05D002473 4.4e-13 77.8 61 68.9
Cpa.g.sc61.12 Carica papaya HOM05D001412 ORTHO05D002473 5.7e-13 77.4 45 82.2
CDE05G3022 Ceratophyllum demersum HOM05D001412 ORTHO05D002473 5.7e-13 77.4 62 71.0
Atru.chr7.1615 Acer truncatum HOM05D001412 ORTHO05D002473 9.8e-13 76.6 62 64.5
CDE05G3162 Ceratophyllum demersum HOM05D001412 ORTHO05D002473 9.8e-13 76.6 62 69.4
vmacro06299 Vaccinium macrocarpon HOM05D001412 ORTHO05D002473 1.3e-12 76.3 45 86.7
SEGI_37152 Sequoiadendron giganteum HOM05D001412 ORTHO05D002473 2.8e-12 75.1 45 86.7
Os11g0302700 Oryza sativa ssp. japonica HOM05D001412 ORTHO05D002473 4.8e-12 74.3 45 80.0
Os01g0901200 Oryza sativa ssp. japonica HOM05D001412 ORTHO05D002473 8.3e-12 73.6 62 66.1
PSO017G0435 Papaver somniferum HOM05D001412 ORTHO05D002473 3.1e-11 71.6 43 76.7
PSO478G3238 Papaver somniferum HOM05D001412 ORTHO05D002473 3.1e-11 71.6 43 76.7
Hma1.2p1_1453F.1_g284320 Hydrangea macrophylla HOM05D001412 ORTHO05D028414 7.0e-11 70.5 63 63.5
AagrBONN_evm.TU.Sc2ySwM_362.1779 Anthoceros agrestis HOM05D001412 ORTHO05D002473 9.1e-11 70.1 45 75.6
ClCG03G015460 Citrullus lanatus HOM05D001412 ORTHO05D002473 1.2e-10 69.7 62 62.9
VMungo0647G2575 Vigna mungo HOM05D001412 ORTHO05D028414 1.2e-10 69.7 45 80.0
Sc18g0002180 Simmondsia chinensis HOM05D001412 ORTHO05D002473 2.0e-10 68.9 45 71.1
MELO3C004628.2 Cucumis melo HOM05D001412 ORTHO05D002473 1.7e-09 65.9 46 76.1
Hma1.2p1_0476F.1_g160810 Hydrangea macrophylla HOM05D001412 ORTHO05D002473 1.7e-09 65.9 56 69.6
Nitab4.5_0003493g0020 Nicotiana tabacum HOM05D001412 ORTHO05D002473 2.9e-09 65.1 49 73.5
Sed0001537 Sechium edule HOM05D001412 ORTHO05D002473 8.5e-09 63.5 62 59.7
HPP92_009445 Vanilla planifolia HOM05D001412 ORTHO05D028414 2.5e-08 62.0 62 59.7
PRCOL_00003016 Prasinoderma coloniale HOM05D001412 ORTHO05D002473 7.2e-08 60.5 45 66.7
Mapoly0006s0306 Marchantia polymorpha HOM05D001412 ORTHO05D002473 1.2e-07 59.7 46 69.6
HPP92_009348 Vanilla planifolia HOM05D001466 ORTHO05D001452 1.2e-07 59.7 49 67.3
Pp3c17_14880 Physcomitrium patens HOM05D001412 ORTHO05D002473 2.1e-07 58.9 43 65.1
SEGI_30988 Sequoiadendron giganteum HOM05D001412 ORTHO05D002473 1.0e-06 56.6 44 63.6
CsaV3_2G001430 Cucumis sativus L. HOM05D001412 ORTHO05D002473 4.0e-06 54.7 61 57.4
TAR633G2298 Trochodendron aralioides HOM05D001412 ORTHO05D002473 5.2e-06 54.3 45 60.0
GSVIVG01005038001 Vitis vinifera HOM05D001412 ORTHO05D002473 6.8e-06 53.9 41 63.4


User provided reference genes

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