Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.7e-88 329.3 173 100.0
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 3.5e-49 198.7 209 54.1
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.3e-46 190.3 184 58.2
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 4.8e-46 188.3 114 81.6
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 4.8e-46 188.3 114 81.6
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 6.3e-46 188.0 119 77.3
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 2.4e-45 186.0 124 74.2
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.0e-44 183.0 111 82.0
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 4.5e-44 181.8 129 72.9
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 5.9e-44 181.4 209 53.6
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 1.0e-43 180.6 127 72.4
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.7e-43 179.9 121 73.6
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 5.0e-43 178.3 128 71.1
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 6.5e-43 177.9 137 68.6
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 8.5e-43 177.6 124 71.8
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 8.5e-43 177.6 121 71.1
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 1.1e-42 177.2 120 70.0
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 3.2e-42 175.6 116 75.0
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 4.2e-42 175.3 151 62.9
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 4.2e-42 175.3 122 70.5
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 4.2e-42 175.3 157 59.9
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.2e-41 173.7 118 68.6
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-41 173.7 121 72.7
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-41 173.7 121 72.7
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.6e-41 173.3 133 66.2
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 2.1e-41 172.9 152 60.5
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 2.7e-41 172.6 208 49.0
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 2.7e-41 172.6 207 47.8
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 6.1e-41 171.4 127 66.9
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 6.1e-41 171.4 118 69.5
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 7.9e-41 171.0 152 60.5
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 7.9e-41 171.0 127 66.1
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.0e-40 170.6 133 65.4
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.0e-40 170.6 116 70.7
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.4e-40 170.2 118 71.2
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 3.0e-40 169.1 176 52.3
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.0e-40 169.1 127 65.4
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 8.8e-40 167.5 153 54.2
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.5e-39 166.8 151 62.3
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.0e-39 166.4 177 52.5
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 3.3e-39 165.6 177 52.5
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.3e-39 165.6 147 61.9
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 4.3e-39 165.2 159 56.0
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 4.3e-39 165.2 153 55.6
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 4.3e-39 165.2 178 58.4
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 4.3e-39 165.2 119 68.1
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 7.4e-39 164.5 154 59.1
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 2.8e-38 162.5 153 54.2
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 3.7e-38 162.2 163 57.1
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 6.3e-38 161.4 153 53.6
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 1.1e-37 160.6 153 52.3
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 1.1e-37 160.6 133 65.4
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.1e-37 160.6 148 60.8
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.8e-37 159.8 114 65.8
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 2.4e-37 159.5 150 55.3
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.4e-37 159.5 145 59.3
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 3.1e-37 159.1 125 65.6
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.5e-36 156.8 96 80.2
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 1.5e-36 156.8 122 62.3
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 2.6e-36 156.0 104 74.0
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.4e-36 155.6 143 58.0
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 4.5e-36 155.2 116 70.7
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.9e-36 154.8 158 57.0
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 1.7e-35 153.3 154 52.6
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 2.2e-35 152.9 154 51.9
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 3.8e-35 152.1 155 52.3
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 5.0e-35 151.8 158 52.5
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 5.0e-35 151.8 189 49.2
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 6.5e-35 151.4 117 65.0
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.4e-34 150.2 163 51.5
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.9e-34 149.8 121 60.3
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.7e-33 146.0 118 62.7
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.0e-32 144.1 147 53.7
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 3.0e-32 142.5 150 52.7
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.3e-31 139.0 116 64.7
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 9.7e-31 137.5 139 54.0
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 2.8e-30 136.0 293 37.2
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 8.2e-30 134.4 206 41.3
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 4.0e-24 115.5 125 43.2
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 4.4e-23 112.1 115 43.5
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.7e-23 111.7 125 39.2
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 5.7e-23 111.7 126 40.5
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 7.5e-23 111.3 136 43.4
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 7.5e-23 111.3 125 42.4
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 9.7e-23 110.9 136 42.6
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 9.7e-23 110.9 125 41.6
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.7e-22 110.2 124 37.1
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.8e-22 109.4 123 40.7
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 6.3e-22 108.2 113 39.8
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 8.2e-22 107.8 124 41.1
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 8.2e-22 107.8 136 41.2
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 8.2e-22 107.8 125 38.4
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 1.1e-21 107.5 127 41.7
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.4e-21 107.1 137 43.1
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 1.4e-21 107.1 114 43.9
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.8e-21 106.7 144 38.9
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.4e-21 106.3 126 41.3
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 2.4e-21 106.3 126 41.3
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 2.4e-21 106.3 126 40.5
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 3.1e-21 105.9 126 40.5
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 3.1e-21 105.9 116 42.2
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 4.1e-21 105.5 71 73.2
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 4.1e-21 105.5 125 40.0
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 5.3e-21 105.1 125 37.6
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 5.3e-21 105.1 141 38.3
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 5.3e-21 105.1 125 37.6
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 9.1e-21 104.4 126 38.9
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 9.1e-21 104.4 125 40.8
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 1.2e-20 104.0 127 40.9
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 2.0e-20 103.2 115 44.3
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 2.0e-20 103.2 120 43.3
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.0e-20 103.2 125 39.2
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 3.5e-20 102.4 127 38.6
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.0e-19 100.9 123 39.0
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 1.7e-19 100.1 126 37.3
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 1.7e-19 100.1 127 39.4
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.7e-19 100.1 126 37.3
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.2e-19 99.8 126 38.1
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 5.0e-19 98.6 127 36.2
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 5.0e-19 98.6 125 38.4
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 6.5e-19 98.2 147 37.4
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.1e-18 97.4 127 33.9
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.9e-18 96.7 126 36.5
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 2.5e-18 96.3 113 42.5
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 2.5e-18 96.3 166 33.1
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 2.5e-18 96.3 123 37.4
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 3.2e-18 95.9 127 36.2
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 3.2e-18 95.9 126 35.7
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 4.2e-18 95.5 114 44.7
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 4.2e-18 95.5 126 35.7
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 7.2e-18 94.7 138 35.5
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 7.2e-18 94.7 144 36.1
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 2.1e-17 93.2 164 29.9
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 2.7e-17 92.8 123 36.6
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.7e-17 92.8 123 35.8
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 3.6e-17 92.4 143 37.1
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 3.0e-16 89.4 111 38.7
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 5.2e-16 88.6 153 37.3
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 5.2e-16 88.6 132 37.1
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 6.8e-16 88.2 114 39.5
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 1.2e-15 87.4 121 38.8
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 9.8e-15 84.3 90 42.2
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 4.8e-14 82.0 124 36.3
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 4.1e-13 79.0 105 38.1
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 2.0e-12 76.6 51 70.6
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 2.2e-11 73.2 87 36.8
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.9e-11 72.8 144 31.2
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 8.5e-11 71.2 87 39.1
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.1e-10 70.9 87 39.1
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 2.5e-10 69.7 180 27.8
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 4.2e-10 68.9 125 31.2
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.2e-09 67.4 77 41.6
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.2e-09 67.4 135 30.4
Gohir.D02G109300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.6e-09 65.9 43 72.1
ClCG01G012270 Citrullus lanatus HOM05D003796 ORTHO05D022376 8.0e-09 64.7 40 75.0
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.0e-08 64.3 79 49.4
Phvul.005G006900 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.0e-08 64.3 56 60.7
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.8e-08 63.5 79 49.4
Nitab4.5_0003575g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.3e-08 63.2 43 69.8
Psat5g230640 Pisum sativum HOM05D003796 ORTHO05D004486 2.3e-08 63.2 63 54.0
Sed0002366 Sechium edule HOM05D003796 ORTHO05D004486 2.3e-08 63.2 46 60.9
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 4.0e-08 62.4 143 32.9
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 3.4e-07 59.3 124 32.3


User provided reference genes

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