Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 8.2e-61 236.9 120 100.0
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.1e-44 181.4 118 82.2
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 9.1e-44 180.3 120 79.2
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.5e-38 162.9 138 65.9
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.7e-37 158.3 119 71.4
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 4.8e-37 157.9 120 70.8
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 6.3e-37 157.5 120 70.8
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 2.4e-36 155.6 113 71.7
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 1.2e-35 153.3 122 69.7
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.0e-35 152.5 121 70.2
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 1.3e-34 149.8 116 72.4
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.2e-34 149.1 125 68.8
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 2.9e-34 148.7 121 66.1
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.8e-34 148.3 121 69.4
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 5.0e-34 147.9 121 69.4
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 5.0e-34 147.9 114 70.2
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 6.5e-34 147.5 120 65.8
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 1.1e-33 146.7 98 75.5
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.4e-33 146.4 119 67.2
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.4e-33 146.4 121 67.8
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 2.5e-33 145.6 121 67.8
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 3.2e-33 145.2 122 68.9
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 3.2e-33 145.2 120 68.3
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 3.2e-33 145.2 121 67.8
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 3.2e-33 145.2 120 64.2
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 4.2e-33 144.8 117 66.7
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 4.2e-33 144.8 122 67.2
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 4.2e-33 144.8 120 65.8
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 5.5e-33 144.4 121 69.4
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 5.5e-33 144.4 121 66.9
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 7.2e-33 144.1 120 65.0
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 7.2e-33 144.1 92 77.2
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 7.2e-33 144.1 114 68.4
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 9.4e-33 143.7 121 67.8
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-32 143.3 120 65.0
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.2e-32 143.3 122 67.2
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.6e-32 142.9 123 63.4
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 1.6e-32 142.9 117 66.7
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.6e-32 142.9 119 67.2
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 3.6e-32 141.7 117 66.7
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 3.6e-32 141.7 113 69.0
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 3.6e-32 141.7 113 69.0
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.7e-32 141.4 124 66.9
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 4.7e-32 141.4 120 65.0
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 4.7e-32 141.4 115 67.0
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 8.0e-32 140.6 120 65.8
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.0e-31 140.2 121 67.8
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 1.0e-31 140.2 122 64.8
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 1.0e-31 140.2 121 65.3
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 1.4e-31 139.8 114 68.4
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 1.8e-31 139.4 117 64.1
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 2.3e-31 139.0 117 61.5
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 3.0e-31 138.7 108 70.4
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 3.9e-31 138.3 117 63.2
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 5.2e-31 137.9 117 63.2
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 6.7e-31 137.5 124 62.1
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 1.1e-30 136.7 114 65.8
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 2.0e-30 136.0 124 61.3
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.0e-30 136.0 124 61.3
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 2.6e-30 135.6 79 82.3
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 3.3e-30 135.2 122 61.5
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 3.3e-30 135.2 88 73.9
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 7.4e-30 134.0 115 64.3
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 1.3e-29 133.3 121 62.0
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 1.3e-29 133.3 112 61.6
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.3e-29 133.3 115 63.5
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 1.3e-29 133.3 119 63.9
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 3.7e-29 131.7 121 62.0
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 3.7e-29 131.7 120 62.5
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 6.3e-29 131.0 121 62.8
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 6.3e-29 131.0 120 60.0
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 8.2e-29 130.6 120 60.0
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 8.2e-29 130.6 123 61.8
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 8.2e-29 130.6 120 60.8
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 8.2e-29 130.6 113 60.2
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.1e-28 130.2 118 63.6
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.1e-28 130.2 115 60.9
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.1e-28 130.2 116 64.7
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.4e-28 129.8 121 60.3
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.4e-28 129.8 80 81.2
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.4e-28 129.8 80 81.2
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.4e-28 129.8 80 81.2
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.4e-28 129.8 74 85.1
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.4e-28 129.8 104 64.4
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.8e-28 129.4 78 79.5
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 3.1e-28 128.6 120 59.2
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 3.1e-28 128.6 120 59.2
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 4.1e-28 128.3 73 84.9
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 5.3e-28 127.9 124 60.5
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 5.3e-28 127.9 122 58.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 7.0e-28 127.5 117 62.4
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 7.0e-28 127.5 121 56.2
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 9.1e-28 127.1 123 61.0
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 9.1e-28 127.1 110 61.8
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 9.1e-28 127.1 110 61.8
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-27 126.7 142 54.9
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-27 126.7 109 63.3
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.2e-27 126.7 75 77.3
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.6e-27 126.3 117 61.5
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.6e-27 126.3 120 60.0
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 2.0e-27 125.9 123 61.0
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 2.0e-27 125.9 82 74.4
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 4.5e-27 124.8 90 71.1
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 7.7e-27 124.0 104 62.5
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 7.7e-27 124.0 104 62.5
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 7.7e-27 124.0 104 62.5
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.0e-26 123.6 115 61.7
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.0e-26 123.6 85 72.9
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.0e-26 123.6 90 70.0
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 3.8e-26 121.7 98 67.3
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 6.5e-26 120.9 91 67.0
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 8.5e-26 120.6 123 56.1
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.1e-25 120.2 120 56.7
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 2.5e-25 119.0 120 54.2
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 2.5e-25 119.0 82 69.5
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 9.4e-25 117.1 99 67.7
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.2e-24 116.7 96 58.3
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 2.1e-24 115.9 152 50.0
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.0e-23 113.6 84 69.0
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 1.8e-23 112.8 73 69.9
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 6.7e-23 110.9 64 79.7
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 3.3e-22 108.6 139 49.6
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.8e-21 105.5 85 58.8
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.1e-20 103.6 88 59.1
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 1.4e-20 103.2 59 81.4
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 9.1e-20 100.5 95 57.9
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.3e-18 96.7 65 72.3
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.7e-18 96.3 73 63.0
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 2.9e-18 95.5 104 48.1
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 8.5e-18 94.0 99 54.5
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 7.2e-17 90.9 121 48.8
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 6.1e-16 87.8 102 50.0
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 6.1e-16 87.8 110 50.0
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 4.0e-15 85.1 77 57.1
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 6.8e-15 84.3 111 47.7
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 2.6e-14 82.4 99 49.5
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 6.8e-07 57.8 83 41.0


User provided reference genes

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