Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 5.6e-59 230.7 116 100.0
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 3.3e-51 204.9 116 87.1
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 5.3e-49 197.6 116 82.8
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 9.0e-49 196.8 115 81.7
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 2.0e-48 195.7 115 80.9
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 2.6e-48 195.3 113 82.3
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 2.6e-48 195.3 115 81.7
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 2.6e-48 195.3 114 80.7
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 2.6e-48 195.3 115 80.9
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.4e-48 194.9 115 80.9
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 5.9e-48 194.1 115 80.9
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 5.9e-48 194.1 115 80.9
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.0e-47 193.4 116 80.2
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 1.0e-47 193.4 112 81.2
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.3e-47 193.0 115 80.0
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.7e-47 192.6 116 81.0
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 2.2e-47 192.2 116 82.8
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 2.9e-47 191.8 114 80.7
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 3.8e-47 191.4 112 79.5
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 3.8e-47 191.4 116 80.2
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 5.0e-47 191.0 116 81.9
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 6.5e-47 190.7 112 78.6
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 6.5e-47 190.7 116 78.4
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 6.5e-47 190.7 116 76.7
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 1.1e-46 189.9 111 81.1
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 1.1e-46 189.9 111 81.1
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.4e-46 189.5 111 80.2
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 1.9e-46 189.1 111 81.1
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.9e-46 189.1 116 76.7
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 1.9e-46 189.1 111 82.9
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 2.5e-46 188.7 112 80.4
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.5e-46 188.7 115 79.1
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.2e-46 188.0 112 78.6
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 4.2e-46 188.0 116 78.4
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 4.2e-46 188.0 116 78.4
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 5.5e-46 187.6 111 79.3
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 7.2e-46 187.2 111 80.2
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 7.2e-46 187.2 111 78.4
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 9.4e-46 186.8 111 79.3
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 9.4e-46 186.8 116 76.7
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.2e-45 186.4 116 76.7
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.2e-45 186.4 116 81.0
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 1.2e-45 186.4 116 77.6
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 1.6e-45 186.0 111 78.4
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 2.1e-45 185.7 116 79.3
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 2.1e-45 185.7 111 77.5
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 2.7e-45 185.3 111 79.3
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 2.7e-45 185.3 116 77.6
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 6.1e-45 184.1 116 75.9
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 6.1e-45 184.1 109 78.9
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 7.9e-45 183.7 116 75.9
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 1.4e-44 183.0 115 75.7
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 1.4e-44 183.0 111 76.6
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 2.3e-44 182.2 111 79.3
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 3.0e-44 181.8 116 76.7
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 3.9e-44 181.4 116 75.9
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 3.9e-44 181.4 112 80.4
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 5.1e-44 181.0 113 77.0
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 6.7e-44 180.6 116 75.9
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 6.7e-44 180.6 112 79.5
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 8.8e-44 180.3 116 75.9
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 8.8e-44 180.3 115 78.3
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 8.8e-44 180.3 114 77.2
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 1.5e-43 179.5 116 75.0
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 2.0e-43 179.1 116 75.9
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 2.0e-43 179.1 116 75.9
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 3.3e-43 178.3 112 77.7
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 5.7e-43 177.6 111 76.6
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.3e-42 176.4 116 72.4
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 1.7e-42 176.0 116 75.0
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 2.2e-42 175.6 86 98.8
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 2.2e-42 175.6 111 76.6
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.8e-42 175.3 110 74.5
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 2.8e-42 175.3 111 73.9
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 4.8e-42 174.5 116 75.9
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 6.3e-42 174.1 111 73.0
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 8.2e-42 173.7 111 73.9
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 1.1e-41 173.3 111 73.0
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.8e-41 172.6 108 75.0
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 2.4e-41 172.2 111 73.0
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 3.1e-41 171.8 111 72.1
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 3.1e-41 171.8 111 72.1
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 3.1e-41 171.8 111 72.1
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 4.1e-41 171.4 111 72.1
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 4.1e-41 171.4 111 72.1
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 4.1e-41 171.4 112 71.4
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 5.3e-41 171.0 111 73.0
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 6.9e-41 170.6 114 74.6
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.2e-40 169.9 111 73.0
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 2.0e-40 169.1 111 69.4
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 2.6e-40 168.7 112 73.2
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 1.7e-39 166.0 111 69.4
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 2.2e-39 165.6 140 62.9
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 8.5e-39 163.7 115 68.7
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 1.9e-38 162.5 111 68.5
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 1.9e-38 162.5 115 68.7
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 2.5e-38 162.2 109 70.6
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 3.2e-38 161.8 126 62.7
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 1.6e-37 159.5 132 60.6
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 1.0e-36 156.8 95 75.8
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 2.3e-36 155.6 108 68.5
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 8.8e-36 153.7 101 71.3
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 1.1e-35 153.3 113 66.4
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 3.3e-35 151.8 108 67.6
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 4.1e-33 144.8 110 61.8
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.5e-32 142.9 81 79.0
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 2.0e-32 142.5 106 64.2
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 3.5e-32 141.7 179 48.6
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 3.5e-32 141.7 115 60.9
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.7e-31 139.4 86 73.3
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 8.5e-31 137.1 107 63.6
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.9e-30 136.0 134 54.5
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 9.4e-30 133.7 100 71.0
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.4e-28 129.8 87 75.9
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 8.8e-28 127.1 106 56.6
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.1e-27 126.7 105 57.1
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 2.0e-27 125.9 91 65.9
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.7e-27 124.4 76 76.3
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 3.5e-24 115.2 67 80.6
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 7.7e-24 114.0 109 49.5
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 1.7e-23 112.8 75 73.3
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 1.7e-23 112.8 75 73.3
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 1.5e-22 109.8 70 75.7
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 5.5e-22 107.8 111 49.5
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.5e-22 107.8 59 81.4
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 5.5e-22 107.8 72 66.7
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 2.3e-20 102.4 70 71.4
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.6e-19 99.0 78 61.5
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 1.7e-18 96.3 95 44.2
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 4.8e-18 94.7 54 79.6
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.1e-17 93.6 61 77.0
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 7.7e-16 87.4 54 79.6
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 1.1e-14 83.6 52 75.0
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.8e-09 66.2 47 68.1
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 5.0e-07 58.2 58 51.7
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 5.0e-07 58.2 60 46.7
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 7.2e-06 54.3 38 65.8


User provided reference genes

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