Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.8e-60 234.6 113 100.0
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 3.8e-60 234.6 113 100.0
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.3e-28 129.8 118 61.9
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 1.5e-27 126.3 123 61.0
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 8.3e-23 110.5 113 59.3
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 2.4e-22 109.0 107 56.1
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 3.2e-22 108.6 113 58.4
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.3e-20 103.2 111 54.1
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 6.2e-18 94.4 113 48.7
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 1.8e-17 92.8 122 46.7
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 3.1e-17 92.0 115 50.4
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 4.0e-17 91.7 112 49.1
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 5.2e-17 91.3 121 49.6
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 5.2e-17 91.3 110 48.2
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 1.2e-16 90.1 98 53.1
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 3.4e-16 88.6 113 44.2
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 5.8e-16 87.8 113 46.9
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 1.7e-15 86.3 108 47.2
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 4.9e-15 84.7 103 43.7
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 4.9e-15 84.7 107 44.9
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 6.4e-15 84.3 114 42.1
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.1e-14 83.6 107 46.7
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 1.1e-14 83.6 120 45.0
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 1.9e-14 82.8 113 45.1
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 1.9e-14 82.8 123 46.3
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 2.4e-14 82.4 115 48.7
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 3.2e-14 82.0 112 47.3
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 7.0e-14 80.9 111 45.0
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 1.2e-13 80.1 119 46.2
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 1.6e-13 79.7 116 47.4
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.6e-13 79.7 112 47.3
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 2.7e-13 79.0 124 46.8
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 2.7e-13 79.0 116 40.5
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 3.5e-13 78.6 111 45.9
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 3.5e-13 78.6 114 43.0
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 4.6e-13 78.2 119 42.9
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 6.0e-13 77.8 116 40.5
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 6.0e-13 77.8 109 46.8
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 7.8e-13 77.4 111 45.0
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 7.8e-13 77.4 106 44.3
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.0e-12 77.0 112 42.9
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 1.3e-12 76.6 124 46.8
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.7e-12 76.3 114 44.7
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 2.3e-12 75.9 116 39.7
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 3.0e-12 75.5 106 43.4
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 3.9e-12 75.1 110 43.6
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 5.0e-12 74.7 130 41.5
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 5.0e-12 74.7 108 43.5
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 6.6e-12 74.3 116 44.0
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 8.6e-12 73.9 125 40.0
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 8.6e-12 73.9 127 44.1
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 8.6e-12 73.9 123 41.5
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 1.1e-11 73.6 109 42.2
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 1.1e-11 73.6 110 43.6
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 1.5e-11 73.2 109 42.2
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.5e-11 73.2 115 40.9
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 2.5e-11 72.4 111 43.2
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 2.5e-11 72.4 110 41.8
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 5.6e-11 71.2 111 44.1
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 7.3e-11 70.9 119 40.3
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 9.5e-11 70.5 116 43.1
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 9.5e-11 70.5 119 39.5
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 1.2e-10 70.1 127 43.3
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 1.2e-10 70.1 127 43.3
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 1.2e-10 70.1 127 43.3
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 1.2e-10 70.1 125 36.8
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 1.6e-10 69.7 127 43.3
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 1.6e-10 69.7 127 43.3
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 1.6e-10 69.7 110 42.7
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 2.1e-10 69.3 121 40.5
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 2.1e-10 69.3 125 44.0
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 2.1e-10 69.3 118 39.8
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 3.6e-10 68.6 110 40.9
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 4.7e-10 68.2 110 40.9
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 4.7e-10 68.2 110 40.9
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 6.2e-10 67.8 110 40.9
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 6.2e-10 67.8 110 40.9
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 6.2e-10 67.8 113 36.3
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 6.2e-10 67.8 101 41.6
Actinidia25963 Actinidia chinensis HOM05D006292 ORTHO05D006110 8.1e-10 67.4 88 52.3
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 8.1e-10 67.4 110 40.9
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 8.1e-10 67.4 113 41.6
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 1.4e-09 66.6 110 40.0
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 1.4e-09 66.6 116 38.8
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.1e-09 65.5 79 48.1
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.1e-09 65.5 79 49.4
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.1e-09 65.5 79 49.4
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 3.1e-09 65.5 112 41.1
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 5.2e-09 64.7 109 38.5
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 6.8e-09 64.3 110 36.4
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 6.8e-09 64.3 110 40.0
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 6.8e-09 64.3 110 36.4
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 6.8e-09 64.3 123 40.7
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 6.8e-09 64.3 110 38.2
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 6.8e-09 64.3 123 40.7
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 8.9e-09 63.9 110 36.4
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 8.9e-09 63.9 115 40.9
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 8.9e-09 63.9 110 40.9
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 8.9e-09 63.9 111 38.7
SGA_v2.0_scaffold198G41102 Striga asiatica HOM05D006292 ORTHO05D006110 1.2e-08 63.5 122 38.5
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 2.0e-08 62.8 117 37.6
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 2.0e-08 62.8 122 39.3
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 3.4e-08 62.0 104 38.5
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 5.8e-08 61.2 112 40.2
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 7.5e-08 60.8 121 37.2
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 9.9e-08 60.5 107 39.3
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 9.9e-08 60.5 106 37.7
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 1.3e-07 60.1 110 39.1
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 1.3e-07 60.1 110 39.1
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 1.3e-07 60.1 110 39.1
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 1.3e-07 60.1 122 37.7
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.3e-07 60.1 123 35.8
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.3e-07 60.1 119 42.9
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.3e-07 60.1 119 42.9
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 1.7e-07 59.7 110 37.3
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 1.7e-07 59.7 110 37.3
Gohir.A03G000800 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.2e-07 59.3 123 36.6
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 2.9e-07 58.9 122 34.4
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.7e-07 58.5 119 42.0
SGA_v2.0_scaffold6G03157 Striga asiatica HOM05D006292 ORTHO05D006110 4.9e-07 58.2 114 38.6
BcaC06g31447 Brassica carinata HOM05D011808 ORTHO05D006110 6.4e-07 57.8 122 37.7
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 6.4e-07 57.8 128 35.9
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 8.3e-07 57.4 126 34.9
Gohir.D03G171400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.4e-06 56.6 123 36.6
Gorai.003G182000 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.4e-06 56.6 123 36.6
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.4e-06 56.6 123 34.1
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 1.9e-06 56.2 127 33.1
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 2.4e-06 55.8 95 35.8
SalBow6G3663 Salvia bowleyana HOM05D006292 ORTHO05D006110 2.4e-06 55.8 78 37.2
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 9.2e-06 53.9 110 35.5


User provided reference genes

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