Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 2.0e-36 155.2 76 100.0
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 2.4e-13 78.6 41 80.5
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 1.5e-12 75.9 35 91.4
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.8e-12 73.9 39 79.5
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 5.8e-12 73.9 39 79.5
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 2.9e-11 71.6 34 88.2
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 3.8e-11 71.2 34 85.3
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.4e-11 70.1 34 85.3
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 8.4e-11 70.1 34 85.3
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 1.4e-10 69.3 34 85.3
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 1.4e-10 69.3 38 78.9
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 1.4e-10 69.3 57 59.6
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 1.4e-10 69.3 34 85.3
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 1.4e-10 69.3 34 82.4
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.4e-10 69.3 34 82.4
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 1.9e-10 68.9 35 82.9
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 1.9e-10 68.9 36 77.8
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 1.9e-10 68.9 34 82.4
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.9e-10 68.9 32 96.9
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.9e-10 68.9 34 82.4
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.9e-10 68.9 34 82.4
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 2.4e-10 68.6 34 82.4
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 3.2e-10 68.2 34 82.4
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.2e-10 68.2 34 91.2
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 3.2e-10 68.2 34 79.4
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 3.2e-10 68.2 36 80.6
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 4.1e-10 67.8 58 53.4
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 4.1e-10 67.8 36 80.6
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 4.1e-10 67.8 37 75.7
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 5.4e-10 67.4 34 79.4
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 5.4e-10 67.4 34 79.4
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 5.4e-10 67.4 34 79.4
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 5.4e-10 67.4 35 82.9
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.4e-10 67.4 35 82.9
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 5.4e-10 67.4 34 85.3
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 7.1e-10 67.0 31 96.8
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 7.1e-10 67.0 34 82.4
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 7.1e-10 67.0 59 52.5
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 7.1e-10 67.0 34 85.3
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 7.1e-10 67.0 34 79.4
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 7.1e-10 67.0 40 70.0
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 9.2e-10 66.6 34 85.3
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 9.2e-10 66.6 28 96.4
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.2e-09 66.2 34 82.4
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 1.2e-09 66.2 34 76.5
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 1.2e-09 66.2 34 82.4
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 1.2e-09 66.2 33 84.8
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 1.6e-09 65.9 57 56.1
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 85.3
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 85.3
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 85.3
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 82.4
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 82.4
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 82.4
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 82.4
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 82.4
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 82.4
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.1e-09 65.5 44 65.9
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.1e-09 65.5 44 65.9
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.1e-09 65.5 44 65.9
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 2.1e-09 65.5 38 73.7
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 82.4
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 82.4
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 2.1e-09 65.5 34 82.4
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 85.3
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 85.3
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 85.3
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 85.3
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 85.3
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 85.3
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 79.4
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 2.7e-09 65.1 36 75.0
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 82.4
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 82.4
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 82.4
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 79.4
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 82.4
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 2.7e-09 65.1 34 79.4
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 3.5e-09 64.7 34 82.4
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 3.5e-09 64.7 34 82.4
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 3.5e-09 64.7 34 82.4
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 3.5e-09 64.7 34 79.4
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 3.5e-09 64.7 34 82.4
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 4.6e-09 64.3 34 76.5
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 82.4
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 6.0e-09 63.9 36 72.2
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 6.0e-09 63.9 34 79.4
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 7.8e-09 63.5 32 87.5
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 7.8e-09 63.5 34 76.5
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 7.8e-09 63.5 34 79.4
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 7.8e-09 63.5 34 76.5
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 7.8e-09 63.5 34 76.5
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 1.0e-08 63.2 34 79.4
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 1.3e-08 62.8 34 76.5
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.7e-08 62.4 34 79.4
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 1.7e-08 62.4 34 82.4
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 2.3e-08 62.0 34 79.4
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 2.3e-08 62.0 34 76.5
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 2.3e-08 62.0 34 76.5
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 6.6e-08 60.5 36 72.2
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 1.5e-07 59.3 28 85.7
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 4.3e-07 57.8 36 72.2
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 4.3e-07 57.8 34 76.5
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 4.3e-07 57.8 32 75.0
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 7.3e-07 57.0 35 74.3
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 3.6e-06 54.7 35 65.7
Os07g0447200 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 6.2e-06 53.9 31 71.0


User provided reference genes

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