Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.9e-127 459.1 223 100.0
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 7.5e-84 314.3 226 69.9
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 6.3e-83 311.2 214 72.0
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 6.3e-83 311.2 225 70.2
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 1.7e-75 286.6 225 63.1
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 2.2e-67 259.6 217 59.4
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 8.3e-67 257.7 216 60.6
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 4.1e-66 255.4 226 58.0
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.0e-64 250.8 216 59.3
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.5e-63 246.9 203 62.1
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 1.9e-63 246.5 196 63.8
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 4.0e-61 238.8 226 53.5
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 6.8e-61 238.0 197 61.4
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 8.9e-61 237.7 216 56.9
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 1.2e-60 237.3 214 59.8
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 2.6e-60 236.1 225 55.1
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 4.4e-60 235.3 225 56.0
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.3e-59 233.8 214 59.8
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.3e-59 233.8 214 58.9
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 3.7e-59 232.3 229 54.1
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 6.4e-59 231.5 214 57.9
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 6.4e-59 231.5 197 59.9
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.4e-58 230.3 227 55.1
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 2.4e-58 229.6 231 52.8
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 3.2e-58 229.2 223 55.2
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 7.0e-58 228.0 216 56.0
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 9.2e-58 227.6 223 54.3
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 9.2e-58 227.6 199 59.3
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 1.2e-57 227.3 214 54.2
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 1.2e-57 227.3 197 60.4
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-57 227.3 197 60.4
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.2e-57 227.3 197 60.4
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 2.0e-57 226.5 213 54.0
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 2.0e-57 226.5 197 60.4
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 2.7e-57 226.1 197 58.4
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.8e-57 224.6 197 59.9
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 1.3e-56 223.8 207 56.0
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.9e-56 222.2 215 52.1
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 5.6e-55 218.4 212 53.3
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 5.6e-55 218.4 215 54.4
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 5.6e-55 218.4 215 53.0
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 7.3e-55 218.0 212 57.5
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 7.3e-55 218.0 197 59.4
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 9.5e-55 217.6 215 54.4
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 9.5e-55 217.6 217 53.5
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 1.2e-54 217.2 215 51.6
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 1.6e-54 216.9 196 54.6
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 2.1e-54 216.5 213 53.1
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 2.1e-54 216.5 221 54.8
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 2.8e-54 216.1 216 53.7
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 8.1e-54 214.5 220 51.4
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 8.1e-54 214.5 203 54.2
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 1.1e-53 214.2 195 53.3
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 1.4e-53 213.8 219 52.5
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 1.4e-53 213.8 220 51.4
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 1.4e-53 213.8 204 52.0
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 3.1e-53 212.6 136 74.3
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 4.0e-53 212.2 205 52.7
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 5.2e-53 211.8 218 51.8
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 1.5e-52 210.3 195 55.4
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 2.0e-52 209.9 221 52.9
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 2.6e-52 209.5 218 50.9
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 3.4e-52 209.1 228 50.0
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 4.9e-51 205.3 220 48.6
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 6.4e-51 204.9 203 50.7
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 1.1e-50 204.1 186 53.2
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 1.9e-50 203.4 223 49.8
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 4.1e-50 202.2 198 53.0
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 5.4e-50 201.8 221 49.8
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 1.6e-49 200.3 220 51.8
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 2.7e-49 199.5 202 53.5
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 6.0e-49 198.4 222 47.3
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 1.0e-48 197.6 200 52.5
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 1.7e-48 196.8 222 50.0
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 3.0e-48 196.1 203 52.2
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 8.6e-48 194.5 245 46.5
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 1.1e-47 194.1 196 52.6
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 1.5e-47 193.7 220 50.9
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 2.5e-47 193.0 203 51.2
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 3.3e-47 192.6 229 47.6
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 3.3e-47 192.6 220 47.3
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 4.3e-47 192.2 203 51.2
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 5.6e-47 191.8 195 53.8
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 7.3e-47 191.4 201 51.7
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 9.5e-47 191.0 197 51.3
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 1.2e-46 190.7 202 49.5
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 2.1e-46 189.9 203 50.7
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 2.8e-46 189.5 197 50.8
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 6.2e-46 188.3 203 50.7
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 1.2e-44 184.1 124 65.3
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 9.9e-44 181.0 114 76.3
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 6.4e-43 178.3 120 67.5
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 1.1e-42 177.6 125 68.8
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 1.1e-42 177.6 202 49.5
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 9.2e-42 174.5 176 51.7
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 1.2e-41 174.1 199 49.2
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 3.5e-41 172.6 212 45.3
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.3e-40 170.6 139 59.0
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 1.1e-39 167.5 195 44.6
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 4.2e-34 149.1 88 72.7
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 1.2e-33 147.5 89 76.4
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 8.7e-32 141.4 209 41.1
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 8.7e-32 141.4 117 62.4
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 1.9e-31 140.2 225 38.7
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 4.8e-30 135.6 114 60.5
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 1.5e-28 130.6 220 37.7
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.5e-28 129.0 211 39.8
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 9.9e-28 127.9 145 46.9
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 2.7e-25 119.8 221 37.1
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 5.6e-23 112.1 84 58.3
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 1.5e-20 104.0 79 65.8
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 5.8e-20 102.1 213 33.8
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 1.4e-18 97.4 140 42.1
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 7.1e-18 95.1 47 85.1
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 6.0e-17 92.0 56 69.6
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 6.7e-16 88.6 93 41.9
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 9.6e-15 84.7 85 41.2
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 1.8e-13 80.5 67 55.2
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 5.8e-12 75.5 57 52.6
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 3.8e-11 72.8 100 39.0
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 2.5e-10 70.1 41 75.6
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 3.9e-08 62.8 75 40.0


User provided reference genes

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