Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047158 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 6.3e-67 257.3 129 100.0
CSS0048603 Camellia sinensis var. sinensis HOM05D002350 ORTHO05D000091 4.4e-44 181.4 96 93.8
Actinidia32657 Actinidia chinensis HOM05D002350 ORTHO05D000091 1.3e-16 90.1 79 59.5
Lj7C663T4 Lonicera japonica HOM05D002350 ORTHO05D000091 5.0e-16 88.2 101 53.5
Rhsim03G0237700 Rhododendron simsii HOM05D002350 ORTHO05D000091 3.3e-15 85.5 92 48.9
Cpa.g.sc40.69 Carica papaya HOM05D002350 ORTHO05D000091 3.6e-14 82.0 83 53.0
GSVIVG01015313001 Vitis vinifera HOM05D002350 ORTHO05D000091 6.2e-14 81.3 125 41.6
Manes.16G110000 Manihot esculenta HOM05D002350 ORTHO05D000091 1.4e-13 80.1 81 51.9
CAN.G160.39 Capsicum annuum HOM05D002350 ORTHO05D000091 2.3e-13 79.3 105 41.9
Rhsim01G0145900 Rhododendron simsii HOM05D000449 ORTHO05D023102 2.3e-13 79.3 92 46.7
Gohir.D07G008700 Gossypium hirsutum HOM05D002350 ORTHO05D000091 3.1e-13 79.0 92 46.7
Gorai.001G008800 Gossypium raimondii HOM05D002350 ORTHO05D000091 3.1e-13 79.0 92 46.7
Gohir.A07G008300 Gossypium hirsutum HOM05D002350 ORTHO05D000091 6.8e-13 77.8 61 57.4
Lj4C392G1 Lonicera japonica HOM05D002350 ORTHO05D000091 6.8e-13 77.8 82 51.2
Lj4C391G5 Lonicera japonica HOM05D002350 ORTHO05D000091 1.2e-12 77.0 121 40.5
Cfa003192 Carpinus fangiana HOM05D002350 ORTHO05D000091 2.6e-12 75.9 81 51.9
Duzib168G2169 Durio zibethinus HOM05D002350 ORTHO05D000091 7.5e-12 74.3 89 46.1
Potri.006G164400 Populus trichocarpa HOM05D002350 ORTHO05D000091 7.5e-12 74.3 74 47.3
Nn8g39091 Nelumbo nucifera HOM05D002350 ORTHO05D000091 1.3e-11 73.6 93 45.2
Duzib168G1106 Durio zibethinus HOM05D002350 ORTHO05D000091 1.7e-11 73.2 85 44.7
Nitab4.5_0000165g0040 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.7e-11 73.2 94 48.9
Thhalv10001896m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 2.2e-11 72.8 76 51.3
Sabra06G0136400 Salix brachista HOM05D002350 ORTHO05D000091 2.2e-11 72.8 74 47.3
TAR624G0664 Trochodendron aralioides HOM05D002350 ORTHO05D000091 2.2e-11 72.8 80 48.8
CiPaw.03G226000 Carya illinoinensis HOM05D002350 ORTHO05D000091 3.7e-11 72.0 70 55.7
HanXRQChr16g0507611 Helianthus annuus HOM05D002350 ORTHO05D000091 3.7e-11 72.0 94 42.6
Potri.007G081300 Populus trichocarpa HOM05D002350 ORTHO05D000091 3.7e-11 72.0 69 47.8
EL10Ac8g18397 Beta vulgaris HOM05D002350 ORTHO05D000091 6.4e-11 71.2 66 50.0
ClCG03G016200 Citrullus lanatus HOM05D002350 ORTHO05D000091 6.4e-11 71.2 99 42.4
Duzib150G1289 Durio zibethinus HOM05D002350 ORTHO05D000091 6.4e-11 71.2 77 49.4
MBI04_g17292_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 6.4e-11 71.2 85 45.9
arahy.Tifrunner.gnm1.ann1.9LQV7C Arachis hypogaea HOM05D002350 ORTHO05D000091 8.3e-11 70.9 75 49.3
Cfa003194 Carpinus fangiana HOM05D002350 ORTHO05D000091 8.3e-11 70.9 81 49.4
Solyc06g051190.3 Solanum lycopersicum HOM05D002350 ORTHO05D000091 8.3e-11 70.9 71 50.7
Nitab4.5_0001354g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 1.4e-10 70.1 71 50.7
Thecc.09G101800 Theobroma cacao HOM05D002350 ORTHO05D000091 1.4e-10 70.1 80 45.0
AL3G48310 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.9e-10 69.7 83 44.6
Ciclev10007331m.g Citrus clementina HOM05D002350 ORTHO05D000091 1.9e-10 69.7 100 43.0
Migut.K00531 Erythranthe guttata HOM05D002350 ORTHO05D000091 1.9e-10 69.7 132 34.1
Rhsim03G0237500 Rhododendron simsii HOM05D002350 ORTHO05D000091 1.9e-10 69.7 124 37.1
BcaB08g34892 Brassica carinata HOM05D002350 ORTHO05D000091 3.2e-10 68.9 77 50.6
MBI04_g40931_MAGBIO Magnolia biondii HOM05D002350 ORTHO05D000091 3.2e-10 68.9 130 38.5
Sopen06g017060 Solanum pennellii HOM05D002350 ORTHO05D000091 3.2e-10 68.9 80 45.0
AT2G19910 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 4.1e-10 68.6 83 47.0
arahy.Tifrunner.gnm1.ann1.HAD3B9 Arachis hypogaea HOM05D002350 ORTHO05D000091 4.1e-10 68.6 75 48.0
VMungo0464G0493 Vigna mungo HOM05D002350 ORTHO05D000091 4.1e-10 68.6 76 48.7
Eucgr.C03764 Eucalyptus grandis HOM05D002350 ORTHO05D000091 5.4e-10 68.2 58 55.2
Lalb_Chr14g0371831 Lupinus albus HOM05D002350 ORTHO05D000091 5.4e-10 68.2 101 38.6
PGSC0003DMG402000361 Solanum tuberosum HOM05D002350 ORTHO05D000091 5.4e-10 68.2 70 50.0
Sp3g33240 Schrenkiella parvula HOM05D002350 ORTHO05D000091 7.0e-10 67.8 98 40.8
CAN.G1642.9 Capsicum annuum HOM05D002350 ORTHO05D000091 9.2e-10 67.4 65 53.8
ECA234G0874 Erigeron canadensis HOM05D002350 ORTHO05D000091 9.2e-10 67.4 76 47.4
PGR102G2642 Punica granatum HOM05D002350 ORTHO05D000091 9.2e-10 67.4 74 45.9
Sopen12g003370 Solanum pennellii HOM05D002350 ORTHO05D000091 9.2e-10 67.4 78 46.2
Carub.0003s3417 Capsella rubella HOM05D002350 ORTHO05D000091 1.2e-09 67.0 66 53.0
AUR62010903 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.2e-09 67.0 75 50.7
Haze_25813 Corylus avellana HOM05D002350 ORTHO05D000091 1.2e-09 67.0 89 47.2
FAN23G2545 Fragaria x ananassa HOM05D002350 ORTHO05D000091 1.2e-09 67.0 55 60.0
Hund28809 Selenicereus undatus HOM05D002350 ORTHO05D000091 1.2e-09 67.0 79 44.3
Hund28811 Selenicereus undatus HOM05D002350 ORTHO05D000091 1.2e-09 67.0 79 44.3
arahy.Tifrunner.gnm1.ann1.2RFB5Y Arachis hypogaea HOM05D002350 ORTHO05D000091 1.6e-09 66.6 76 47.4
arahy.Tifrunner.gnm1.ann1.7X0VYH Arachis hypogaea HOM05D002350 ORTHO05D000091 1.6e-09 66.6 76 47.4
AUR62021424 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.6e-09 66.6 87 47.1
AUR62021426 Chenopodium quinoa HOM05D002350 ORTHO05D000091 1.6e-09 66.6 62 50.0
Rhsim01G0146500 Rhododendron simsii HOM05D026357 ORTHO05D023102 1.6e-09 66.6 94 42.6
Atru.chr7.1447 Acer truncatum HOM05D002350 ORTHO05D000091 2.0e-09 66.2 74 47.3
Lsat_1_v5_gn_5_144600 Lactuca sativa HOM05D002350 ORTHO05D000091 2.7e-09 65.9 82 46.3
CARHR110370 Cardamine hirsuta HOM05D002350 ORTHO05D000091 3.5e-09 65.5 64 50.0
HanXRQChr16g0503801 Helianthus annuus HOM05D002350 ORTHO05D000091 3.5e-09 65.5 81 46.9
QL02p042039 Quercus lobata HOM05D002350 ORTHO05D000091 3.5e-09 65.5 72 52.8
RcHm_v2.0_Chr2g0091711 Rosa chinensis HOM05D002350 ORTHO05D000091 3.5e-09 65.5 62 50.0
Thhalv10001897m.g Eutrema salsugineum HOM05D002350 ORTHO05D000091 4.6e-09 65.1 54 53.7
Oeu064190.1 Olea europaea HOM05D002350 ORTHO05D000091 4.6e-09 65.1 65 50.8
Sed0013258 Sechium edule HOM05D002350 ORTHO05D000091 4.6e-09 65.1 95 37.9
BolC8t51797H Brassica oleracea HOM05D002350 ORTHO05D000091 6.0e-09 64.7 76 48.7
FvH4_1g05990 Fragaria vesca HOM05D002350 ORTHO05D000091 6.0e-09 64.7 55 58.2
AL3G48270 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 7.8e-09 64.3 66 48.5
BcaC06g36656 Brassica carinata HOM05D002350 ORTHO05D000091 7.8e-09 64.3 71 43.7
BolC7t40580H Brassica oleracea HOM05D002350 ORTHO05D000091 7.8e-09 64.3 71 43.7
Carub.0003s3418 Capsella rubella HOM05D002350 ORTHO05D000091 7.8e-09 64.3 83 41.0
Glyma.01G008700 Glycine max HOM05D002350 ORTHO05D000091 7.8e-09 64.3 58 53.4
HanXRQChr16g0503771 Helianthus annuus HOM05D002350 ORTHO05D000091 7.8e-09 64.3 81 46.9
C07p01760 Brassica napus HOM05D002350 ORTHO05D000091 1.0e-08 63.9 71 43.7
BcaC07g41231 Brassica carinata HOM05D002350 ORTHO05D000091 1.3e-08 63.5 76 47.4
C08p42360 Brassica napus HOM05D002350 ORTHO05D000091 1.3e-08 63.5 76 47.4
BraA09t41291Z Brassica rapa HOM05D002350 ORTHO05D000091 1.3e-08 63.5 76 46.1
Os01g0198100 Oryza sativa ssp. japonica HOM05D002350 ORTHO05D000091 1.3e-08 63.5 98 34.7
Psat1g046880 Pisum sativum HOM05D002350 ORTHO05D000091 1.3e-08 63.5 71 47.9
AT2G19930 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 1.7e-08 63.2 66 48.5
A10p17220 Brassica napus HOM05D002350 ORTHO05D000091 1.7e-08 63.2 65 50.8
BraA10t43806Z Brassica rapa HOM05D002350 ORTHO05D000091 1.7e-08 63.2 65 50.8
Migut.N01382 Erythranthe guttata HOM05D002350 ORTHO05D000091 1.7e-08 63.2 71 45.1
FAN19G2534 Fragaria x ananassa HOM05D002350 ORTHO05D000091 1.7e-08 63.2 55 56.4
THA.LOC104808318 Tarenaya hassleriana HOM05D002350 ORTHO05D000091 1.7e-08 63.2 75 42.7
Medtr6g088660 Medicago truncatula HOM05D002350 ORTHO05D000091 2.3e-08 62.8 92 40.2
Nitab4.5_0000566g0160 Nicotiana tabacum HOM05D002350 ORTHO05D000091 2.3e-08 62.8 88 42.0
Phvul.004G176400 Phaseolus vulgaris HOM05D002350 ORTHO05D000091 2.3e-08 62.8 57 52.6
RcHm_v2.0_Chr2g0091671 Rosa chinensis HOM05D002350 ORTHO05D000091 2.3e-08 62.8 64 53.1
BcaB03g16779 Brassica carinata HOM05D002350 ORTHO05D000091 3.0e-08 62.4 69 49.3
BraA07t27873Z Brassica rapa HOM05D002350 ORTHO05D000091 3.0e-08 62.4 71 42.3
AUR62010901 Chenopodium quinoa HOM05D002350 ORTHO05D000091 3.0e-08 62.4 60 50.0
Cc06_g10350 Coffea canephora HOM05D002350 ORTHO05D000091 3.0e-08 62.4 88 40.9
Aa31LG8G16870 Aethionema arabicum HOM05D002350 ORTHO05D000091 3.9e-08 62.0 67 44.8
CsaV3_1G039730 Cucumis sativus L. HOM05D002350 ORTHO05D000091 3.9e-08 62.0 97 38.1
Lj2g0003052 Lotus japonicus HOM05D002350 ORTHO05D000091 3.9e-08 62.0 77 42.9
Nitab4.5_0011131g0010 Nicotiana tabacum HOM05D002350 ORTHO05D000091 3.9e-08 62.0 74 48.6
A07p00750 Brassica napus HOM05D002350 ORTHO05D000091 5.0e-08 61.6 71 42.3
A09p59080 Brassica napus HOM05D002350 ORTHO05D000091 5.0e-08 61.6 75 46.7
Oeu064188.1 Olea europaea HOM05D002350 ORTHO05D000091 5.0e-08 61.6 75 44.0
Ah.14g083290 Amaranthus hybridus HOM05D002350 ORTHO05D000091 6.6e-08 61.2 62 45.2
Aqoxy7G03876 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 6.6e-08 61.2 82 42.7
RcHm_v2.0_Chr4g0418181 Rosa chinensis HOM05D002350 ORTHO05D000091 6.6e-08 61.2 55 52.7
Hund26256 Selenicereus undatus HOM05D002350 ORTHO05D000091 8.6e-08 60.8 72 47.2
MSTRG.10607 Avicennia marina HOM05D002350 ORTHO05D000091 1.1e-07 60.5 71 43.7
BcaB03g16778 Brassica carinata HOM05D002350 ORTHO05D000091 1.1e-07 60.5 71 46.5
SalBow5G3880 Salvia bowleyana HOM05D002350 ORTHO05D000091 1.5e-07 60.1 71 43.7
AL3G48290 Arabidopsis lyrata HOM05D002350 ORTHO05D000091 1.9e-07 59.7 93 36.6
A01p33770 Brassica napus HOM05D002350 ORTHO05D000091 1.9e-07 59.7 69 46.4
ECA236G2339 Erigeron canadensis HOM05D002350 ORTHO05D000091 1.9e-07 59.7 86 37.2
Peaxi162Scf00665g00310 Petunia axillaris HOM05D002350 ORTHO05D000091 1.9e-07 59.7 71 45.1
Lsat_1_v5_gn_8_96860 Lactuca sativa HOM05D002350 ORTHO05D000091 2.5e-07 59.3 76 42.1
RcHm_v2.0_Chr2g0091721 Rosa chinensis HOM05D002350 ORTHO05D000091 2.5e-07 59.3 65 49.2
Cc06_g10360 Coffea canephora HOM05D002350 ORTHO05D000091 3.3e-07 58.9 97 40.2
RcHm_v2.0_Chr5g0014401 Rosa chinensis HOM05D002350 ORTHO05D000091 3.3e-07 58.9 54 51.9
Haze_25814 Corylus avellana HOM05D002350 ORTHO05D000091 4.3e-07 58.5 76 47.4
MELO3C015406.2 Cucumis melo HOM05D002350 ORTHO05D000091 4.3e-07 58.5 76 40.8
DCAR_018379 Daucus carota HOM05D002350 ORTHO05D000091 4.3e-07 58.5 64 46.9
FAN19G1217 Fragaria x ananassa HOM05D002350 ORTHO05D000091 5.6e-07 58.2 62 45.2
FAN26G1444 Fragaria x ananassa HOM05D002350 ORTHO05D000091 5.6e-07 58.2 62 45.2
FAN26G3334 Fragaria x ananassa HOM05D002350 ORTHO05D000091 5.6e-07 58.2 62 45.2
Prupe.7G221200 Prunus persica HOM05D002350 ORTHO05D000091 5.6e-07 58.2 54 51.9
TPR.G21372 Trifolium pratense HOM05D002350 ORTHO05D000091 5.6e-07 58.2 53 50.9
ATR0705G139 Amborella trichopoda HOM05D002350 ORTHO05D000091 7.3e-07 57.8 62 46.8
AT2G19920 Arabidopsis thaliana HOM05D002350 ORTHO05D000091 7.3e-07 57.8 72 40.3
BcaC06g36654 Brassica carinata HOM05D002350 ORTHO05D000091 7.3e-07 57.8 76 47.4
C07p01790 Brassica napus HOM05D002350 ORTHO05D000091 7.3e-07 57.8 76 47.4
BolC7t40582H Brassica oleracea HOM05D002350 ORTHO05D000091 7.3e-07 57.8 76 47.4
MD02G1064400 Malus domestica HOM05D002350 ORTHO05D000091 7.3e-07 57.8 56 46.4
COL.COLO4_34763 Corchorus olitorius HOM05D002350 ORTHO05D000091 9.5e-07 57.4 61 55.7
FvH4_1g05980 Fragaria vesca HOM05D002350 ORTHO05D000091 9.5e-07 57.4 62 45.2
Peaxi162Scf00824g00114 Petunia axillaris HOM05D002350 ORTHO05D000091 1.2e-06 57.0 87 40.2
Rhsim01G0117800 Rhododendron simsii HOM05D026357 ORTHO05D023102 1.2e-06 57.0 67 47.8
Zm00001eb088530 Zea mays HOM05D054927 ORTHO05D000091 1.6e-06 56.6 74 43.2
A07p00720 Brassica napus HOM05D002350 ORTHO05D000091 2.8e-06 55.8 80 45.0
BraA07t27871Z Brassica rapa HOM05D002350 ORTHO05D000091 2.8e-06 55.8 80 45.0
PSO210G2001 Papaver somniferum HOM05D002350 ORTHO05D000091 2.8e-06 55.8 86 43.0
DCAR_018431 Daucus carota HOM05D002350 ORTHO05D000091 3.6e-06 55.5 63 47.6
Aqoxy6G02291 Aquilegia oxysepala HOM05D002350 ORTHO05D000091 6.2e-06 54.7 88 39.8
CANSAT56G1437 Cannabis sativa HOM05D002350 ORTHO05D000091 6.2e-06 54.7 62 43.5
CDE05G2808 Ceratophyllum demersum HOM05D002350 ORTHO05D000091 6.2e-06 54.7 60 40.0
PSO210G7085 Papaver somniferum HOM05D002350 ORTHO05D000091 8.1e-06 54.3 84 41.7


User provided reference genes

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