Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.6e-121 439.5 232 100.0
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 7.9e-121 437.2 232 99.6
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.5e-87 326.6 239 77.4
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.2e-86 322.8 241 75.9
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 2.2e-86 322.8 238 76.9
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 6.4e-86 321.2 235 75.3
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.4e-80 303.5 238 73.5
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 3.2e-77 292.4 215 77.2
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 4.1e-77 292.0 189 84.1
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 3.5e-76 288.9 236 72.9
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 4.6e-76 288.5 236 70.8
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 2.5e-74 282.7 240 68.3
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 4.3e-74 282.0 239 66.5
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 4.3e-74 282.0 239 68.2
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 4.3e-74 282.0 245 67.3
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.2e-73 280.4 240 67.5
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 1.6e-73 280.0 235 69.8
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 2.1e-73 279.6 238 66.8
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 4.7e-73 278.5 244 68.9
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 8.1e-73 277.7 239 66.9
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.1e-72 277.3 235 71.5
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.4e-72 276.9 242 68.6
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 2.3e-72 276.2 188 78.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 4.0e-72 275.4 239 66.9
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 6.8e-72 274.6 229 68.1
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 1.2e-71 273.9 235 68.5
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 4.4e-71 271.9 234 67.5
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 7.5e-71 271.2 235 68.9
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 1.3e-70 270.4 187 77.5
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 1.3e-70 270.4 189 77.2
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 2.2e-70 269.6 242 67.8
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 2.2e-70 269.6 235 68.1
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 3.7e-70 268.9 238 68.9
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 3.7e-70 268.9 187 77.5
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 6.4e-70 268.1 189 77.8
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 6.4e-70 268.1 237 67.1
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 2.4e-69 266.2 235 66.8
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 2.4e-69 266.2 189 74.1
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 2.4e-69 266.2 271 60.5
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 3.2e-69 265.8 235 66.0
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 5.4e-69 265.0 238 67.2
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 1.2e-68 263.8 236 68.2
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.2e-68 263.8 236 67.4
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.1e-68 263.1 235 66.0
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 4.6e-68 261.9 198 72.2
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 6.0e-68 261.5 191 75.4
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 6.0e-68 261.5 227 66.5
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 7.8e-68 261.2 227 66.1
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 7.8e-68 261.2 236 64.4
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.0e-67 260.8 183 77.6
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.0e-67 260.8 244 65.6
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.0e-67 260.8 244 65.6
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.0e-67 260.8 185 75.1
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.3e-67 260.4 237 65.8
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.3e-67 260.4 182 78.6
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 3.0e-67 259.2 245 63.3
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 3.9e-67 258.8 180 76.7
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 8.6e-67 257.7 249 60.6
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.1e-66 257.3 254 63.4
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.3e-66 255.8 190 72.1
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 3.3e-66 255.8 255 60.4
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 5.6e-66 255.0 256 62.1
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 7.3e-66 254.6 240 62.1
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 7.3e-66 254.6 183 76.0
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.2e-65 253.8 183 74.9
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.2e-65 253.8 183 74.9
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.2e-65 253.8 183 74.9
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 1.2e-65 253.8 182 71.4
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 3.6e-65 252.3 216 65.3
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 4.7e-65 251.9 183 74.3
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 6.2e-65 251.5 183 74.3
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 8.1e-65 251.1 183 74.9
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 8.1e-65 251.1 183 74.3
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 1.1e-64 250.8 183 73.2
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 1.4e-64 250.4 179 76.0
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.4e-64 250.4 195 68.2
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 4.0e-64 248.8 184 73.4
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 5.2e-64 248.4 184 70.7
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 6.8e-64 248.1 206 69.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 6.8e-64 248.1 243 63.0
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 6.8e-64 248.1 190 71.1
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 1.2e-63 247.3 219 64.8
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.2e-63 247.3 229 62.9
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 3.4e-63 245.7 235 62.1
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 4.4e-63 245.4 165 78.2
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.3e-62 243.8 219 66.7
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 1.7e-62 243.4 309 51.5
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.9e-62 242.7 242 60.7
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 6.4e-62 241.5 218 64.7
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 6.4e-62 241.5 218 64.7
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 6.4e-62 241.5 182 69.8
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.4e-61 240.4 183 69.9
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 4.1e-61 238.8 187 71.1
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 9.2e-61 237.7 235 62.6
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 9.2e-61 237.7 237 64.1
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 4.6e-60 235.3 236 59.7
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 3.9e-59 232.3 237 59.1
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.8e-57 226.1 203 63.1
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 2.0e-55 219.9 182 63.7
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 3.4e-55 219.2 252 59.1
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 7.6e-55 218.0 242 55.4
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 7.1e-53 211.5 160 75.0
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 7.1e-53 211.5 165 68.5
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.2e-52 210.7 184 66.8
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 5.1e-51 205.3 213 55.4
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 4.3e-50 202.2 188 62.8
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 2.1e-49 199.9 193 57.5
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.7e-44 183.0 235 52.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 9.6e-42 174.5 179 56.4
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 3.7e-41 172.6 143 63.6
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.8e-41 172.2 125 74.4
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.5e-39 165.6 216 53.7
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 8.4e-38 161.4 193 50.3
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 6.0e-36 155.2 262 44.3
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.8e-33 145.6 108 73.1
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.9e-32 141.7 101 73.3
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 4.5e-31 139.0 101 71.3
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 4.9e-30 135.6 151 53.6
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.9e-30 135.6 94 72.3
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 8.4e-30 134.8 167 50.3
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 9.3e-29 131.3 194 44.3
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 3.5e-28 129.4 189 45.0
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 7.9e-28 128.3 189 44.4
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.0e-27 127.9 211 41.7
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 9.7e-26 121.3 72 81.9
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 2.8e-25 119.8 97 71.1
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 4.8e-25 119.0 110 56.4
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.1e-24 117.9 168 41.7
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 5.3e-24 115.5 97 59.8
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 5.3e-24 115.5 140 49.3
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 3.8e-22 109.4 153 47.1
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 7.2e-21 105.1 205 39.0
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.6e-20 102.8 82 65.9
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.3e-17 94.4 169 39.1
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.7e-17 94.0 93 62.4
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 2.9e-14 83.2 131 41.2
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 4.2e-13 79.3 122 44.3
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 4.4e-10 69.3 178 33.1
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 9.1e-08 61.6 51 64.7
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 9.1e-08 61.6 240 31.2
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 3.4e-07 59.7 53 66.0


User provided reference genes

Program Settings