Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 3.1e-290 1001.1 514 100.0
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 4.4e-204 714.9 516 72.7
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 3.2e-186 655.6 474 72.2
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 9.2e-186 654.1 498 68.3
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 5.6e-183 644.8 496 67.1
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 3.6e-182 642.1 487 70.4
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 4.7e-182 641.7 479 69.5
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 5.2e-181 638.3 477 68.6
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 1.5e-180 636.7 481 68.4
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 2.6e-180 636.0 461 69.4
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 8.3e-179 630.9 391 80.6
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 3.9e-176 622.1 514 65.2
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 6.6e-176 621.3 474 67.5
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.5e-175 620.2 477 66.2
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 4.3e-175 618.6 475 67.6
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 1.2e-174 617.1 477 66.9
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 6.2e-174 614.8 475 66.1
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 1.4e-173 613.6 491 66.2
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.8e-173 613.2 479 66.4
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 1.5e-172 610.1 484 67.1
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 2.6e-172 609.4 466 67.6
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.4e-172 609.0 479 65.6
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 1.7e-171 606.7 504 64.1
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.9e-171 605.9 475 69.5
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 3.7e-171 605.5 490 64.9
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 1.4e-170 603.6 480 65.0
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.9e-170 603.2 355 85.1
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 3.2e-170 602.4 460 65.9
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 3.2e-170 602.4 466 68.5
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 7.1e-170 601.3 459 66.2
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 7.1e-170 601.3 459 66.9
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 1.2e-169 600.5 459 66.2
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.6e-169 600.1 468 64.3
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.6e-169 600.1 479 64.9
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.7e-169 599.4 468 63.9
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 2.7e-169 599.4 465 66.7
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 3.0e-168 595.9 482 64.3
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 3.9e-168 595.5 482 64.7
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 1.1e-167 594.0 479 64.9
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.5e-167 593.6 506 61.5
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 3.3e-167 592.4 453 66.7
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 2.8e-166 589.3 478 63.0
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 3.6e-166 589.0 476 62.8
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 6.2e-166 588.2 516 61.2
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.3e-165 586.3 453 65.8
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 5.2e-165 585.1 455 64.8
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 6.8e-165 584.7 473 63.4
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 8.9e-165 584.3 487 62.8
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 4.4e-164 582.0 480 62.9
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.7e-163 580.1 477 64.2
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 3.7e-163 578.9 473 63.6
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 4.9e-163 578.6 458 65.3
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.3e-163 577.8 397 71.8
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.1e-162 577.4 397 71.8
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 5.4e-162 575.1 450 64.9
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 5.4e-162 575.1 463 64.1
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 9.2e-162 574.3 487 61.8
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.6e-161 573.5 479 63.3
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 3.5e-161 572.4 458 62.9
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 1.1e-159 567.4 511 59.5
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 3.3e-159 565.8 503 60.4
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 4.3e-159 565.5 519 59.2
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.6e-158 563.5 457 64.1
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 2.1e-158 563.1 483 60.2
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 2.8e-158 562.8 490 60.8
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 3.6e-158 562.4 478 62.8
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 6.2e-158 561.6 474 62.7
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 8.1e-158 561.2 482 61.6
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 8.1e-158 561.2 477 62.7
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 1.8e-157 560.1 459 61.9
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 6.8e-157 558.1 474 62.7
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 3.4e-156 555.8 457 64.1
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 9.9e-156 554.3 457 64.1
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 9.9e-156 554.3 499 57.7
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.1e-154 550.8 494 61.1
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 1.0e-152 544.3 443 64.1
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 1.5e-151 540.4 487 59.5
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 1.9e-151 540.0 454 61.0
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.3e-147 527.3 342 78.1
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 2.9e-147 526.2 466 60.3
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.4e-146 523.9 404 67.1
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 1.2e-145 520.8 505 57.2
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 3.5e-145 519.2 476 59.2
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 1.7e-144 516.9 500 57.0
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 6.6e-144 515.0 483 58.8
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 1.3e-142 510.8 488 56.1
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 2.8e-142 509.6 464 58.6
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 8.1e-142 508.1 462 58.4
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 1.5e-140 503.8 462 58.9
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 1.5e-140 503.8 462 58.7
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 3.2e-138 496.1 466 56.9
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 5.4e-138 495.4 420 62.6
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 1.0e-136 491.1 466 56.7
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 1.8e-128 463.8 515 50.1
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 3.5e-121 439.5 480 50.2
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 3.9e-120 436.0 502 50.0
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 6.7e-120 435.3 354 66.1
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 6.3e-118 428.7 501 49.5
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 4.5e-116 422.5 424 56.1
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 2.0e-108 397.1 378 53.7
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 2.0e-108 397.1 419 50.1
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 1.5e-103 380.9 400 51.0
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.0e-100 370.5 348 61.5
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 5.0e-99 365.9 370 54.1
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.1e-89 332.4 218 73.9
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.0e-75 288.5 190 74.2
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 4.3e-74 283.1 378 41.8
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 3.1e-56 223.8 183 64.5
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 2.4e-45 187.6 212 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 1.9e-42 177.9 317 35.0
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.3e-38 165.2 159 60.4
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 6.6e-35 152.9 165 53.9
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 3.9e-27 127.1 106 56.6
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 7.6e-23 112.8 137 48.2
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 4.6e-20 103.6 232 28.9
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 9.0e-16 89.4 88 55.7
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 2.0e-15 88.2 294 26.5
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 2.0e-15 88.2 294 26.5
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 5.8e-15 86.7 323 22.0
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 1.6e-09 68.6 163 30.7
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.6e-09 68.6 91 48.4
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 2.1e-09 68.2 223 24.2
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 2.1e-09 68.2 223 24.2
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 3.7e-09 67.4 139 27.3
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 4.8e-09 67.0 121 27.3
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 1.8e-08 65.1 179 27.9
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.8e-08 65.1 122 27.0
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 2.4e-08 64.7 122 27.0
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 3.1e-08 64.3 122 27.0
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 6.9e-08 63.2 115 25.2
Aqoxy1G01011 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 2.6e-07 61.2 103 30.1
FvH4_2g04590 Fragaria vesca HOM05D003056 ORTHO05D003422 4.5e-07 60.5 133 29.3
FAN15G3015 Fragaria x ananassa HOM05D003056 ORTHO05D003422 4.5e-07 60.5 133 29.3
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 4.5e-07 60.5 256 23.8
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 7.6e-07 59.7 118 26.3
HPP92_002379 Vanilla planifolia HOM05D005862 ORTHO05D007731 1.3e-06 58.9 206 22.8
DCAR_026261 Daucus carota HOM05D006999 ORTHO05D008936 1.7e-06 58.5 245 24.5
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 1.7e-06 58.5 207 23.2
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 1.7e-06 58.5 138 24.6
Potri.009G092100 Populus trichocarpa HOM05D003056 ORTHO05D003422 2.9e-06 57.8 237 25.3
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 3.8e-06 57.4 99 30.3
CANSAT64G2603 Cannabis sativa HOM05D007157 ORTHO05D009045 3.8e-06 57.4 241 21.2
Medtr7g056613 Medicago truncatula HOM05D001779 ORTHO05D001753 3.8e-06 57.4 159 27.7
FAN24G1521 Fragaria x ananassa HOM05D003056 ORTHO05D003422 5.0e-06 57.0 133 28.6
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 5.0e-06 57.0 226 23.5
MD10G1101600 Malus domestica HOM05D003056 ORTHO05D003422 6.5e-06 56.6 161 24.8
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 8.5e-06 56.2 152 26.3
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 8.5e-06 56.2 119 26.9
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 8.5e-06 56.2 119 26.9


User provided reference genes

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