Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047095 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.2e-82 308.9 159 100.0
CSS0010224 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.6e-80 301.6 159 98.1
CSS0045184 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.0e-79 300.1 159 97.5
CSS0043236 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.4e-79 299.7 159 96.9
CSS0031021 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 2.3e-79 298.9 159 96.2
CSS0007988 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.0e-79 298.5 159 96.9
CSS0032709 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 3.9e-79 298.1 159 96.9
CSS0037322 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 4.4e-78 294.7 159 96.2
CSS0037751 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D014541 1.3e-74 283.1 159 93.1
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 1.3e-37 160.2 87 94.3
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 7.8e-35 151.0 87 86.2
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.5e-33 146.7 87 85.1
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 1.5e-33 146.7 87 83.9
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 1.2e-30 137.1 87 78.2
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 1.2e-30 137.1 87 78.2
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 2.6e-30 136.0 87 77.0
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 5.8e-30 134.8 87 77.0
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 7.6e-30 134.4 87 79.3
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 9.9e-30 134.0 85 77.6
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 9.9e-30 134.0 85 77.6
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 1.7e-29 133.3 87 79.3
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 2.9e-29 132.5 87 78.2
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 4.9e-29 131.7 87 75.9
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 6.4e-29 131.3 85 77.6
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 6.4e-29 131.3 87 74.7
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 8.4e-29 131.0 104 71.2
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 1.1e-28 130.6 87 73.6
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.1e-28 130.6 87 74.7
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.1e-28 130.6 87 74.7
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 1.4e-28 130.2 87 74.7
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 4.1e-28 128.6 87 73.6
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 4.1e-28 128.6 87 73.6
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 4.1e-28 128.6 87 78.2
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 5.4e-28 128.3 87 72.4
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 7.1e-28 127.9 87 70.1
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 2.7e-27 125.9 87 73.6
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 2.7e-27 125.9 87 70.1
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 7.8e-27 124.4 87 73.6
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 1.3e-26 123.6 87 73.6
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 1.7e-26 123.2 87 73.6
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 2.3e-26 122.9 87 70.1
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 2.3e-26 122.9 87 70.1
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 3.0e-26 122.5 88 70.5
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 3.0e-26 122.5 87 71.3
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 8.6e-26 120.9 87 69.0
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 1.1e-25 120.6 87 67.8
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 1.5e-25 120.2 87 71.3
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 1.5e-25 120.2 87 72.4
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 2.5e-25 119.4 87 71.3
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 2.5e-25 119.4 87 69.0
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 4.3e-25 118.6 85 68.2
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 5.6e-25 118.2 87 70.1
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 1.6e-24 116.7 87 69.0
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.6e-24 116.7 87 70.1
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 3.6e-24 115.5 87 69.0
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 4.7e-24 115.2 87 70.1
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 4.7e-24 115.2 87 70.1
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 6.2e-24 114.8 87 67.8
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 6.2e-24 114.8 87 69.0
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 6.2e-24 114.8 87 69.0
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 8.1e-24 114.4 87 69.0
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 8.1e-24 114.4 88 69.3
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 1.1e-23 114.0 87 69.0
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 1.1e-23 114.0 87 67.8
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 1.8e-23 113.2 87 69.0
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 2.4e-23 112.8 95 62.1
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 3.1e-23 112.5 96 63.5
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 3.1e-23 112.5 87 66.7
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 3.1e-23 112.5 89 65.2
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 4.0e-23 112.1 87 66.7
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 4.0e-23 112.1 95 61.1
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 5.2e-23 111.7 87 65.5
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 6.8e-23 111.3 87 65.5
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 1.2e-22 110.5 87 66.7
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 1.2e-22 110.5 87 63.2
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 1.2e-22 110.5 87 65.5
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 2.0e-22 109.8 87 65.5
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 2.6e-22 109.4 87 64.4
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 3.4e-22 109.0 96 61.5
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 3.4e-22 109.0 87 65.5
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 4.4e-22 108.6 87 63.2
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 4.4e-22 108.6 87 63.2
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 2.9e-21 105.9 117 45.3
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 3.8e-21 105.5 85 62.4
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 3.8e-21 105.5 85 62.4
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 3.8e-21 105.5 85 62.4
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 3.8e-21 105.5 96 60.4
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 4.9e-21 105.1 85 61.2
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 4.9e-21 105.1 85 61.2
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 4.9e-21 105.1 96 60.4
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 6.4e-21 104.8 85 62.4
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 8.4e-21 104.4 85 62.4
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 1.1e-20 104.0 85 61.2
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 1.4e-20 103.6 95 57.9
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 1.9e-20 103.2 84 61.9
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 1.9e-20 103.2 87 64.4
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 3.2e-20 102.4 110 49.1
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 4.2e-20 102.1 85 60.0
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 5.4e-20 101.7 86 62.8
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 5.4e-20 101.7 87 58.6
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 9.3e-20 100.9 110 48.2
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 1.2e-19 100.5 87 60.9
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 2.7e-19 99.4 87 58.6
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 3.5e-19 99.0 87 57.5
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 6.0e-19 98.2 85 61.2
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 6.0e-19 98.2 87 60.9
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 1.0e-18 97.4 78 61.5
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 1.7e-18 96.7 96 57.3
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 5.1e-18 95.1 110 44.5
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 2.1e-16 89.7 93 52.7
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 6.2e-16 88.2 88 56.8
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 6.2e-16 88.2 100 51.0
Psat4g083840 Pisum sativum HOM05D003697 ORTHO05D014541 1.4e-15 87.0 81 60.5
Cpa.g.sc30.4 Carica papaya HOM05D003697 ORTHO05D005452 1.8e-15 86.7 62 71.0
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 1.2e-14 84.0 113 42.5
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 1.5e-14 83.6 95 48.4
TPR.G34678 Trifolium pratense HOM05D003697 ORTHO05D014541 2.1e-11 73.2 85 51.8
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 6.0e-11 71.6 90 43.3
Psat7g199600 Pisum sativum HOM05D003697 ORTHO05D023078 2.3e-10 69.7 72 54.2
Psat5g083120 Pisum sativum HOM05D003697 ORTHO05D002190 8.7e-10 67.8 62 59.7


User provided reference genes

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