Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047088 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 4.7e-27 123.6 56 100.0
Hma1.2p1_0624F.1_g191410 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 2.3e-26 121.3 55 94.5
Hma1.2p1_1736F.1_g299920 Hydrangea macrophylla HOM05D004321 ORTHO05D004889 2.3e-26 121.3 55 94.5
CSS0020614 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 3.0e-26 120.9 56 96.4
CSS0036330 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 3.0e-26 120.9 56 96.4
Ciclev10013313m.g Citrus clementina HOM05D004321 ORTHO05D004889 4.0e-26 120.6 56 94.6
FvH4_3g35530 Fragaria vesca HOM05D004321 ORTHO05D004889 5.2e-26 120.2 55 92.7
FAN11G1758 Fragaria x ananassa HOM05D004321 ORTHO05D004889 5.2e-26 120.2 55 92.7
FAN21G2447 Fragaria x ananassa HOM05D004321 ORTHO05D004889 8.9e-26 119.4 55 90.9
Ciclev10033281m.g Citrus clementina HOM05D004321 ORTHO05D004889 1.2e-25 119.0 56 91.1
TAR369G0439 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.2e-25 119.0 56 92.9
vmacro20132 Vaccinium macrocarpon HOM05D004321 ORTHO05D004889 1.2e-25 119.0 56 92.9
FAN16G3546 Fragaria x ananassa HOM05D004321 ORTHO05D004889 2.0e-25 118.2 54 92.6
Solyc06g060080.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 2.6e-25 117.9 56 87.5
MD03G1096900 Malus domestica HOM05D004321 ORTHO05D004889 3.4e-25 117.5 56 89.3
CANSAT54G0658 Cannabis sativa HOM05D004321 ORTHO05D004889 4.4e-25 117.1 56 89.3
DCAR_027656 Daucus carota HOM05D004321 ORTHO05D004889 4.4e-25 117.1 56 89.3
Nn2g12809 Nelumbo nucifera HOM05D004321 ORTHO05D004889 4.4e-25 117.1 56 91.1
Atru.chr8.1939 Acer truncatum HOM05D004321 ORTHO05D004889 5.7e-25 116.7 56 91.1
DCAR_015188 Daucus carota HOM05D004321 ORTHO05D004889 5.7e-25 116.7 55 89.1
FAN25G0680 Fragaria x ananassa HOM05D004321 ORTHO05D004889 5.7e-25 116.7 54 90.7
TAR636G2028 Trochodendron aralioides HOM05D004321 ORTHO05D004889 5.7e-25 116.7 56 91.1
MD01G1124900 Malus domestica HOM05D004321 ORTHO05D004889 7.5e-25 116.3 55 90.9
Potri.010G207600 Populus trichocarpa HOM05D004321 ORTHO05D004889 1.3e-24 115.5 55 90.9
TAR633G0306 Trochodendron aralioides HOM05D004321 ORTHO05D004889 1.3e-24 115.5 54 92.6
Prupe.6G081200 Prunus persica HOM05D004321 ORTHO05D004889 1.7e-24 115.2 56 89.3
PGR142G1540 Punica granatum HOM05D004321 ORTHO05D004889 2.2e-24 114.8 55 89.1
RcHm_v2.0_Chr5g0063751 Rosa chinensis HOM05D004321 ORTHO05D004889 2.2e-24 114.8 56 87.5
Hund04987 Selenicereus undatus HOM05D004321 ORTHO05D004889 2.2e-24 114.8 54 92.6
Atru.chr12.498 Acer truncatum HOM05D004321 ORTHO05D004889 3.7e-24 114.0 56 87.5
CAN.G531.3 Capsicum annuum HOM05D004321 ORTHO05D004889 3.7e-24 114.0 56 85.7
Prupe.2G232300 Prunus persica HOM05D004321 ORTHO05D004889 3.7e-24 114.0 55 89.1
CiPaw.14G070600 Carya illinoinensis HOM05D004321 ORTHO05D004889 4.9e-24 113.6 56 89.3
Cc02_g08100 Coffea canephora HOM05D004321 ORTHO05D004889 4.9e-24 113.6 55 87.3
QL01p032862 Quercus lobata HOM05D004321 ORTHO05D004889 4.9e-24 113.6 55 87.3
SGA_v2.0_scaffold104G30152 Striga asiatica HOM05D004321 ORTHO05D004889 4.9e-24 113.6 54 87.0
Lalb_Chr14g0374991 Lupinus albus HOM05D004321 ORTHO05D004889 6.3e-24 113.2 56 87.5
Lalb_Chr03g0026871 Lupinus albus HOM05D004321 ORTHO05D004889 8.3e-24 112.8 56 85.7
Potri.008G053000 Populus trichocarpa HOM05D004321 ORTHO05D004889 8.3e-24 112.8 55 87.3
Hund04986 Selenicereus undatus HOM05D004321 ORTHO05D004889 8.3e-24 112.8 54 90.7
CiPaw.13G097400 Carya illinoinensis HOM05D004321 ORTHO05D004889 1.1e-23 112.5 56 87.5
Migut.D00865 Erythranthe guttata HOM05D004321 ORTHO05D004889 1.1e-23 112.5 54 88.9
Phvul.011G067300 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 1.1e-23 112.5 56 87.5
Migut.H00021 Erythranthe guttata HOM05D004321 ORTHO05D004889 1.4e-23 112.1 53 90.6
Oeu031979.1 Olea europaea HOM05D004321 ORTHO05D004889 1.4e-23 112.1 56 87.5
PGSC0003DMG400011781 Solanum tuberosum HOM05D004321 ORTHO05D004889 1.4e-23 112.1 56 83.9
ATR0582G115 Amborella trichopoda HOM05D004321 ORTHO05D004889 1.8e-23 111.7 54 85.2
MSTRG.15649 Avicennia marina HOM05D004321 ORTHO05D004889 1.8e-23 111.7 54 88.9
Ca_19194_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 1.8e-23 111.7 56 87.5
unitig_37.g12533 Utricularia gibba HOM05D000061 ORTHO05D003487 1.8e-23 111.7 53 86.8
Ah.15g096870 Amaranthus hybridus HOM05D004321 ORTHO05D004889 2.4e-23 111.3 54 87.0
Ah.15g096900 Amaranthus hybridus HOM05D004321 ORTHO05D004889 2.4e-23 111.3 54 87.0
CAN.G526.11 Capsicum annuum HOM05D004321 ORTHO05D004889 2.4e-23 111.3 56 83.9
ClCG04G008340 Citrullus lanatus HOM05D004321 ORTHO05D004889 2.4e-23 111.3 56 83.9
Psat0s128g0040 Pisum sativum HOM05D004321 ORTHO05D004889 2.4e-23 111.3 56 85.7
Cc01_g12570 Coffea canephora HOM05D004321 ORTHO05D004889 3.1e-23 110.9 54 87.0
Glyma.12G066300 Glycine max HOM05D004321 ORTHO05D004889 4.1e-23 110.5 56 85.7
Lalb_Chr01g0003821 Lupinus albus HOM05D004321 ORTHO05D004889 4.1e-23 110.5 56 82.1
TWI75G1213 Tripterygium wilfordii HOM05D004321 ORTHO05D004889 4.1e-23 110.5 56 85.7
Ca_01346_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 5.4e-23 110.2 56 85.7
Oeu033243.1 Olea europaea HOM05D004321 ORTHO05D004889 5.4e-23 110.2 56 87.5
Thecc.09G325400 Theobroma cacao HOM05D004321 ORTHO05D004889 5.4e-23 110.2 55 89.1
EL10Ac7g15980 Beta vulgaris HOM05D004321 ORTHO05D004889 7.0e-23 109.8 53 84.9
COL.COLO4_18474 Corchorus olitorius HOM05D004321 ORTHO05D004889 1.2e-22 109.0 55 87.3
Glyma.11G143200 Glycine max HOM05D004321 ORTHO05D004889 1.2e-22 109.0 56 83.9
CsaV3_4G024800 Cucumis sativus L. HOM05D004321 ORTHO05D004889 1.6e-22 108.6 55 81.8
Nitab4.5_0003240g0020 Nicotiana tabacum HOM05D004321 ORTHO05D004889 1.6e-22 108.6 56 83.9
Solyc11g005050.2 Solanum lycopersicum HOM05D004321 ORTHO05D004889 1.6e-22 108.6 56 82.1
HPP92_018999 Vanilla planifolia HOM05D004321 ORTHO05D004889 1.6e-22 108.6 55 81.8
Nitab4.5_0000322g0010 Nicotiana tabacum HOM05D004321 ORTHO05D004889 2.0e-22 108.2 54 85.2
CAN.G711.6 Capsicum annuum HOM05D004321 ORTHO05D004889 2.7e-22 107.8 56 80.4
Cpa.g.sc190.10 Carica papaya HOM05D004321 ORTHO05D004889 2.7e-22 107.8 55 83.6
Ca_31212_v3 Cicer arietinum L. HOM05D004321 ORTHO05D004889 2.7e-22 107.8 54 85.2
Manes.04G032700 Manihot esculenta HOM05D004321 ORTHO05D004889 2.7e-22 107.8 55 85.5
Phvul.L002443 Phaseolus vulgaris HOM05D004321 ORTHO05D004889 2.7e-22 107.8 56 85.7
Psat7g219560 Pisum sativum HOM05D004321 ORTHO05D004889 2.7e-22 107.8 54 83.3
Sed0023983 Sechium edule HOM05D004321 ORTHO05D004889 2.7e-22 107.8 55 80.0
Lsat_1_v5_gn_5_168880 Lactuca sativa HOM05D004321 ORTHO05D004889 3.5e-22 107.5 55 85.5
Nitab4.5_0001168g0080 Nicotiana tabacum HOM05D004321 ORTHO05D004889 3.5e-22 107.5 56 82.1
Nitab4.5_0002045g0030 Nicotiana tabacum HOM05D004321 ORTHO05D004889 3.5e-22 107.5 56 82.1
Lj3g0011964 Lotus japonicus HOM05D004321 ORTHO05D004889 4.5e-22 107.1 56 82.1
HanXRQChr05g0132661 Helianthus annuus HOM05D004321 ORTHO05D004889 5.9e-22 106.7 56 83.9
Medtr4g063080 Medicago truncatula HOM05D004321 ORTHO05D004889 5.9e-22 106.7 56 80.4
Sed0004580 Sechium edule HOM05D004321 ORTHO05D004889 5.9e-22 106.7 56 78.6
PGSC0003DMG402006052 Solanum tuberosum HOM05D004321 ORTHO05D004889 5.9e-22 106.7 56 80.4
MELO3C003114.2 Cucumis melo HOM05D004321 ORTHO05D004889 7.8e-22 106.3 55 80.0
Glyma.15G041300 Glycine max HOM05D004321 ORTHO05D004889 7.8e-22 106.3 56 83.9
Medtr2g096370 Medicago truncatula HOM05D004321 ORTHO05D004889 1.0e-21 105.9 56 80.4
Manes.11G132700 Manihot esculenta HOM05D004321 ORTHO05D004889 1.3e-21 105.5 55 83.6
SalBow1G1058 Salvia bowleyana HOM05D004321 ORTHO05D004889 1.7e-21 105.1 55 76.4
SalBow1G8509 Salvia bowleyana HOM05D004321 ORTHO05D004889 1.7e-21 105.1 55 76.4
Gohir.A05G097300 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 81.8
Gohir.A05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 81.8
Gohir.D03G128000 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 81.8
Gohir.D05G097400 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 81.8
Gohir.D05G097500 Gossypium hirsutum HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 81.8
Gorai.003G134700 Gossypium raimondii HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 81.8
Gorai.009G101100 Gossypium raimondii HOM05D004321 ORTHO05D004889 2.3e-21 104.8 55 81.8
HanXRQChr02g0044521 Helianthus annuus HOM05D004321 ORTHO05D004889 3.9e-21 104.0 54 83.3
Gohir.A03G040001 Gossypium hirsutum HOM05D004321 ORTHO05D004889 5.0e-21 103.6 55 80.0
Gorai.009G101000 Gossypium raimondii HOM05D004321 ORTHO05D004889 6.6e-21 103.2 55 80.0
HanXRQChr05g0143771 Helianthus annuus HOM05D004321 ORTHO05D004889 8.6e-21 102.8 54 83.3
PSO339G6107 Papaver somniferum HOM05D004321 ORTHO05D004889 1.9e-20 101.7 51 84.3
AL5G25260 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 3.3e-20 100.9 56 76.8
AL8G36130 Arabidopsis lyrata HOM05D004321 ORTHO05D004889 3.3e-20 100.9 56 76.8
AT3G46430 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 3.3e-20 100.9 56 76.8
AT5G59613 Arabidopsis thaliana HOM05D004321 ORTHO05D004889 3.3e-20 100.9 56 76.8
Thhalv10015813m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 3.3e-20 100.9 56 76.8
Aa31LG4G15480 Aethionema arabicum HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 76.8
BcaB01g04562 Brassica carinata HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 75.0
A02p07010 Brassica napus HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 75.0
BraA02t05781Z Brassica rapa HOM05D004321 ORTHO05D004889 4.3e-20 100.5 56 75.0
CARHR273120 Cardamine hirsuta HOM05D004321 ORTHO05D004889 5.6e-20 100.1 56 75.0
BcaC01g06508 Brassica carinata HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
BcaC03g13996 Brassica carinata HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
A03p11570 Brassica napus HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
A10p16870 Brassica napus HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
C02p12350 Brassica napus HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
C03p13450 Brassica napus HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
BolC2t07335H Brassica oleracea HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
BolC3t13802H Brassica oleracea HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
BraA03t10470Z Brassica rapa HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
BraA10t43766Z Brassica rapa HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
Carub.0005s1223 Capsella rubella HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
Carub.0008s2029 Capsella rubella HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
CARHR154850 Cardamine hirsuta HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
Sp5g15250 Schrenkiella parvula HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
Sp6g21320 Schrenkiella parvula HOM05D004321 ORTHO05D004889 9.5e-20 99.4 56 75.0
Thhalv10003016m.g Eutrema salsugineum HOM05D004321 ORTHO05D004889 1.6e-19 98.6 56 75.0
arahy.Tifrunner.gnm1.ann1.CZHF5K Arachis hypogaea HOM05D004321 ORTHO05D004889 2.1e-19 98.2 55 74.5
BcaB08g36233 Brassica carinata HOM05D004321 ORTHO05D004889 2.1e-19 98.2 56 73.2
BcaB08g36235 Brassica carinata HOM05D004321 ORTHO05D004889 2.8e-19 97.8 56 73.2
BcaC04g19749 Brassica carinata HOM05D004321 ORTHO05D004889 2.8e-19 97.8 56 73.2
C09p52020 Brassica napus HOM05D004321 ORTHO05D004889 2.8e-19 97.8 56 73.2
BolC9t58064H Brassica oleracea HOM05D004321 ORTHO05D004889 2.8e-19 97.8 56 73.2
Zm00001eb355680 Zea mays HOM05D004321 ORTHO05D004889 2.8e-19 97.8 55 72.7
Aqoxy2G02059 Aquilegia oxysepala HOM05D004321 ORTHO05D004889 4.7e-19 97.1 53 77.4
Peaxi162Scf01003g00014 Petunia axillaris HOM05D004321 ORTHO05D004889 4.7e-19 97.1 55 74.5
THA.LOC109116048 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 4.7e-19 97.1 55 72.7
THA.LOC104814874 Tarenaya hassleriana HOM05D004321 ORTHO05D004889 6.1e-19 96.7 54 72.2
arahy.Tifrunner.gnm1.ann1.NFV9ZK Arachis hypogaea HOM05D004321 ORTHO05D004889 8.0e-19 96.3 54 74.1
Haze_24057 Corylus avellana HOM05D004321 ORTHO05D004889 2.3e-18 94.7 89 53.9
Os03g0606200 Oryza sativa ssp. japonica HOM05D004321 ORTHO05D004889 2.3e-18 94.7 53 71.7
Lalb_Chr24g0394261 Lupinus albus HOM05D004321 ORTHO05D004889 1.1e-15 85.9 40 87.5
MD11G1143400 Malus domestica HOM05D004321 ORTHO05D004889 1.9e-15 85.1 40 85.0
Sc12g0001610 Simmondsia chinensis HOM05D004321 ORTHO05D004889 2.4e-15 84.7 39 89.7
SGA_v2.0_scaffold199G41163 Striga asiatica HOM05D004321 ORTHO05D004889 2.4e-15 84.7 40 85.0
CSS0040757 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 9.2e-15 82.8 54 64.8
Glyma.13G333000 Glycine max HOM05D004321 ORTHO05D004889 9.2e-15 82.8 40 85.0
VMungo0720G0686 Vigna mungo HOM05D004321 ORTHO05D004889 4.6e-14 80.5 40 85.0
CSS0037228 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 3.0e-13 77.8 54 66.7
MBI14_g11678_MAGBIO Magnolia biondii HOM05D004321 ORTHO05D004889 3.0e-13 77.8 40 75.0
Zm00001eb022520 Zea mays HOM05D003081 ORTHO05D004889 3.0e-13 77.8 47 68.1
Zm00001eb120950 Zea mays HOM05D004321 ORTHO05D004889 3.0e-13 77.8 47 68.1
Sabra08G0038100 Salix brachista HOM05D004321 ORTHO05D004889 5.0e-13 77.0 40 80.0
Aa31sc23G280 Aethionema arabicum HOM05D004321 ORTHO05D004889 4.3e-12 73.9 40 75.0
RcHm_v2.0_Chr1g0360701 Rosa chinensis HOM05D004321 ORTHO05D004889 5.6e-12 73.6 40 75.0
RcHm_v2.0_Chr7g0223231 Rosa chinensis HOM05D004321 ORTHO05D004889 7.3e-12 73.2 40 75.0
CSS0027128 Camellia sinensis var. sinensis HOM05D004321 ORTHO05D004889 1.2e-11 72.4 39 79.5
HanXRQChr05g0129691 Helianthus annuus HOM05D004321 ORTHO05D004889 1.2e-11 72.4 34 85.3
RcHm_v2.0_Chr1g0340881 Rosa chinensis HOM05D004321 ORTHO05D004889 1.8e-10 68.6 40 75.0
RcHm_v2.0_Chr1g0367621 Rosa chinensis HOM05D004321 ORTHO05D004889 1.8e-10 68.6 40 75.0
RcHm_v2.0_Chr6g0265721 Rosa chinensis HOM05D004321 ORTHO05D004889 1.8e-10 68.6 40 75.0
RcHm_v2.0_Chr3g0463581 Rosa chinensis HOM05D004321 ORTHO05D004889 4.0e-10 67.4 40 75.0
RcHm_v2.0_Chr2g0162431 Rosa chinensis HOM05D004321 ORTHO05D004889 2.0e-09 65.1 40 72.5
Sc21g0005590 Simmondsia chinensis HOM05D000500 ORTHO05D000367 2.9e-08 61.2 55 50.9
RcHm_v2.0_Chr7g0198591 Rosa chinensis HOM05D004321 ORTHO05D004889 4.1e-07 57.4 29 79.3
Zm00001eb421570 Zea mays HOM05D019028 ORTHO05D446816 6.0e-06 53.5 36 61.1
AagrBONN_evm.TU.Sc2ySwM_368.1086 Anthoceros agrestis HOM05D060648 ORTHO05D023521 7.8e-06 53.1 42 54.8
Zm00001eb134980 Zea mays HOM05D019028 ORTHO05D442488 7.8e-06 53.1 36 58.3
Zm00001eb417700 Zea mays HOM05D019028 ORTHO05D004889 7.8e-06 53.1 36 58.3


User provided reference genes

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