Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 0.0e+00 1110.5 574 100.0
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 2.4e-288 995.0 584 87.5
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 1.9e-285 985.3 575 86.3
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 3.3e-285 984.6 574 89.9
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 3.1e-283 978.0 571 86.9
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 8.7e-278 959.9 573 85.5
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 1.5e-274 949.1 574 84.5
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.0e-274 948.7 567 84.3
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 1.3e-273 946.0 566 85.5
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 2.9e-273 944.9 554 86.1
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 1.4e-272 942.6 564 84.4
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 5.5e-272 940.6 579 82.6
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 9.3e-272 939.9 571 83.4
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 1.6e-271 939.1 567 84.5
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 1.6e-271 939.1 571 84.2
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 6.1e-271 937.2 532 87.8
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 7.9e-271 936.8 574 82.2
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.8e-270 935.6 572 82.0
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 2.3e-270 935.3 567 84.8
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 5.1e-270 934.1 519 89.0
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 6.7e-270 933.7 571 82.1
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 8.7e-270 933.3 573 82.7
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 8.7e-270 933.3 552 85.1
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.1e-269 932.9 560 84.5
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 1.1e-269 932.9 521 89.4
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.5e-269 932.6 578 82.2
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.9e-269 932.2 560 84.3
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 4.3e-269 931.0 557 85.1
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 5.7e-269 930.6 566 81.8
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 5.7e-269 930.6 563 83.8
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 7.4e-269 930.2 568 84.0
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 1.3e-268 929.5 568 82.4
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 2.8e-268 928.3 571 84.6
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 8.2e-268 926.8 568 82.4
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 1.8e-267 925.6 568 83.6
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.1e-267 924.9 561 84.0
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 2.6e-266 921.8 584 79.5
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.7e-265 919.1 548 83.6
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 2.2e-265 918.7 540 85.0
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 7.2e-264 913.7 597 79.4
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 2.7e-263 911.8 531 85.7
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 4.6e-263 911.0 559 81.4
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 7.9e-263 910.2 520 86.7
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 1.0e-262 909.8 562 81.5
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.0e-262 909.8 575 80.3
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 1.0e-262 909.8 579 80.0
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-262 909.4 576 80.2
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 3.0e-262 908.3 515 87.4
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 3.9e-262 907.9 538 84.8
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 3.9e-262 907.9 565 81.9
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 6.7e-262 907.1 528 86.4
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.1e-261 906.4 562 81.7
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 1.1e-261 906.4 580 80.0
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.0e-261 905.6 564 81.4
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 2.0e-261 905.6 533 85.0
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 5.7e-261 904.0 539 83.7
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 5.7e-261 904.0 550 82.7
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 5.7e-261 904.0 531 85.1
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.4e-261 903.7 577 80.4
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 1.3e-260 902.9 518 86.7
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 6.3e-260 900.6 557 81.1
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 1.4e-259 899.4 521 86.6
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 1.8e-259 899.0 549 83.1
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 1.8e-259 899.0 530 84.7
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.9e-259 897.1 577 80.1
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 1.5e-258 896.0 524 84.5
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 1.5e-258 896.0 524 84.5
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 1.5e-258 896.0 524 84.5
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 3.4e-258 894.8 525 84.8
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 5.9e-258 894.0 529 84.9
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 7.7e-258 893.6 524 84.2
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 7.7e-258 893.6 524 84.2
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.0e-257 893.3 525 84.6
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 1.0e-257 893.3 559 81.0
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 1.3e-257 892.9 521 85.4
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 5.0e-257 891.0 528 85.0
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 5.0e-257 891.0 553 81.2
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 5.0e-257 891.0 517 86.5
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 1.1e-256 889.8 558 80.3
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.1e-256 889.8 504 86.7
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 3.2e-256 888.3 565 79.6
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 2.1e-255 885.6 540 82.6
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.1e-255 885.6 561 80.2
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 6.1e-255 884.0 533 83.1
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 7.9e-255 883.6 533 82.7
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 1.8e-254 882.5 570 79.1
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.3e-252 876.3 494 89.9
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 8.2e-252 873.6 538 81.0
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 4.1e-251 871.3 583 76.5
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.0e-250 869.0 528 83.5
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 5.9e-250 867.5 572 77.4
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 5.9e-250 867.5 569 77.3
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 7.7e-250 867.1 518 83.2
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.1e-248 863.2 520 82.1
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 3.6e-247 858.2 557 78.3
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 1.1e-245 853.2 528 81.4
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 2.2e-244 849.0 499 84.0
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 2.9e-241 838.6 569 75.4
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 3.8e-241 838.2 564 76.4
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 1.1e-240 836.6 551 76.4
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 2.7e-239 832.0 473 87.5
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 6.3e-236 820.8 467 87.2
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 8.5e-233 810.4 519 78.6
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 3.2e-232 808.5 572 74.7
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 1.4e-230 803.1 484 84.3
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 1.1e-227 793.5 548 72.3
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 6.1e-223 777.7 494 76.7
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 4.0e-222 775.0 491 76.0
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 8.3e-220 767.3 491 75.2
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 2.1e-215 752.7 540 73.5
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 2.0e-213 746.1 419 86.2
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 4.1e-211 738.4 419 85.7
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 1.3e-209 733.4 405 90.4
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.2e-205 720.3 572 68.0
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.7e-204 716.5 536 70.1
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 2.2e-204 716.1 501 71.3
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 5.6e-200 701.4 573 65.8
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.2e-196 689.5 498 68.1
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 6.2e-191 671.4 460 72.6
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 3.1e-190 669.1 577 64.5
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 5.4e-187 658.3 522 64.6
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 8.7e-185 651.0 487 64.3
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 6.9e-174 614.8 507 64.9
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.7e-172 610.1 318 94.3
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.1e-167 593.2 568 57.9
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 1.3e-161 573.9 356 83.1
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 1.8e-161 573.5 505 60.2
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 4.8e-159 565.5 429 65.5
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 7.6e-157 558.1 505 59.6
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-156 557.0 505 59.4
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.0e-156 555.4 501 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 2.3e-137 493.4 331 72.5
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-132 478.0 502 53.4
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 4.1e-126 456.1 611 48.1
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 3.8e-124 449.5 500 47.4
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 6.4e-103 379.0 531 39.7
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-97 361.3 431 49.7
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 3.4e-88 330.1 346 54.9
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 2.2e-87 327.4 425 41.4
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 3.1e-73 280.4 171 83.6
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 6.9e-73 279.3 526 38.8
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.7e-69 267.3 167 76.0
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 4.9e-63 246.5 256 52.7
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.3e-55 221.9 410 38.3
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 1.0e-52 212.2 476 34.9
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 5.3e-49 199.9 140 72.1
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.0e-44 184.1 105 84.8
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 6.9e-41 172.9 106 85.8
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 6.9e-41 172.9 116 78.4
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 4.2e-38 163.7 139 59.0
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 8.5e-31 139.4 95 81.1
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 1.1e-30 139.0 80 83.8
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 2.7e-29 134.4 77 88.3
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 3.6e-21 107.5 65 84.6
BcaC05g26027 Brassica carinata HOM05D001920 ORTHO05D024365 1.0e-20 105.9 80 68.8
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 1.0e-20 105.9 76 67.1
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.1e-17 95.9 54 88.9
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 1.4e-17 95.5 74 52.7
SGA_v2.0_scaffold26G11215 Striga asiatica HOM05D001920 ORTHO05D024365 7.0e-17 93.2 50 90.0
MBI17_g36954_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D012920 4.5e-16 90.5 65 72.3
C05p19930 Brassica napus HOM05D001920 ORTHO05D024365 1.0e-12 79.3 53 73.6
C06p01410 Brassica napus HOM05D001920 ORTHO05D024365 6.7e-12 76.6 98 48.0
ECA232G0588 Erigeron canadensis HOM05D000006 ORTHO05D000001 8.8e-12 76.3 49 77.6
BolC5t30691H Brassica oleracea HOM05D001920 ORTHO05D024365 2.6e-11 74.7 43 81.4
Lj7A259T19 Lonicera japonica HOM05D001920 ORTHO05D235283 1.7e-10 72.0 155 36.8
ATR0009G024 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.2e-08 65.9 81 46.9
Lsat_1_v5_gn_6_51140 Lactuca sativa HOM05D001920 ORTHO05D233273 1.6e-08 65.5 52 61.5
Lsat_1_v5_gn_1_94900 Lactuca sativa HOM05D001920 ORTHO05D231497 1.3e-07 62.4 52 57.7
ATR0009G028 Amborella trichopoda HOM05D001920 ORTHO05D005408 1.9e-06 58.5 44 59.1
Cfa024452 Carpinus fangiana HOM05D001920 ORTHO05D123033 7.2e-06 56.6 199 25.6


User provided reference genes

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