Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.6e-52 208.4 99 100.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.6e-52 208.4 99 100.0
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 2.1e-38 162.2 98 79.6
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.8e-38 161.8 96 79.2
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 3.0e-37 158.3 98 80.6
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 4.0e-37 157.9 102 78.4
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 4.0e-37 157.9 101 74.3
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 5.2e-37 157.5 99 77.8
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 6.8e-37 157.1 97 74.2
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 8.8e-37 156.8 99 76.8
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 1.5e-36 156.0 101 78.2
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 2.0e-36 155.6 99 77.8
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 2.6e-36 155.2 98 77.6
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 7.5e-36 153.7 100 76.0
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.3e-35 152.9 100 76.0
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.7e-35 152.5 98 73.5
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.7e-35 152.5 98 73.5
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 3.7e-35 151.4 98 75.5
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 1.1e-34 149.8 93 76.3
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 1.4e-34 149.4 102 71.6
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.8e-34 149.1 101 71.3
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 1.8e-34 149.1 98 71.4
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.1e-34 148.3 99 75.8
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 7.0e-34 147.1 100 71.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 9.2e-34 146.7 98 72.4
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.2e-33 146.4 98 72.4
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.6e-33 146.0 98 71.4
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.7e-33 145.2 89 77.5
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 2.7e-33 145.2 89 77.5
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.5e-33 144.8 87 80.5
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 3.5e-33 144.8 100 73.0
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.5e-33 144.8 98 70.4
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.5e-33 144.8 98 70.4
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 4.5e-33 144.4 71 100.0
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 5.9e-33 144.1 84 79.8
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 5.9e-33 144.1 100 69.0
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 7.8e-33 143.7 99 71.7
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 7.8e-33 143.7 100 73.0
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 7.8e-33 143.7 100 71.0
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 7.8e-33 143.7 98 70.4
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.0e-32 143.3 102 71.6
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.3e-32 142.9 99 73.7
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 1.3e-32 142.9 103 70.9
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.3e-32 142.9 99 71.7
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.3e-32 142.1 100 73.0
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.3e-32 142.1 99 71.7
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 2.9e-32 141.7 100 72.0
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 2.9e-32 141.7 101 73.3
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 2.9e-32 141.7 101 73.3
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.9e-32 141.7 100 69.0
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 2.9e-32 141.7 100 67.0
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 3.8e-32 141.4 100 64.0
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 5.0e-32 141.0 101 73.3
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 5.0e-32 141.0 97 69.1
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 5.0e-32 141.0 101 72.3
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 6.6e-32 140.6 100 68.0
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 6.6e-32 140.6 100 72.0
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 6.6e-32 140.6 101 73.3
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 6.6e-32 140.6 99 70.7
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 6.6e-32 140.6 100 66.0
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 8.6e-32 140.2 103 68.9
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.1e-31 139.8 101 72.3
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 1.1e-31 139.8 105 68.6
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 1.1e-31 139.8 99 67.7
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 1.1e-31 139.8 100 70.0
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.5e-31 139.4 99 66.7
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 1.5e-31 139.4 103 68.9
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 1.9e-31 139.0 101 67.3
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.5e-31 138.7 100 72.0
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 2.5e-31 138.7 99 70.7
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 4.3e-31 137.9 105 68.6
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 4.3e-31 137.9 100 67.0
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 4.3e-31 137.9 100 67.0
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 5.6e-31 137.5 100 66.0
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 7.3e-31 137.1 97 66.0
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 9.5e-31 136.7 104 68.3
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 9.5e-31 136.7 87 75.9
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.2e-30 136.3 102 66.7
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.6e-30 136.0 89 76.4
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 2.8e-30 135.2 88 77.3
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 2.8e-30 135.2 101 64.4
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.8e-30 135.2 98 63.3
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 3.6e-30 134.8 102 64.7
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 3.6e-30 134.8 101 66.3
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 3.6e-30 134.8 100 69.0
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 4.7e-30 134.4 74 79.7
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 4.7e-30 134.4 102 64.7
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.4e-29 132.9 99 67.7
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 1.4e-29 132.9 105 64.8
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 1.8e-29 132.5 100 70.0
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 3.0e-29 131.7 99 66.7
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 4.0e-29 131.3 99 67.7
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 4.0e-29 131.3 99 66.7
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 4.0e-29 131.3 103 66.0
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.0e-29 131.3 88 72.7
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 5.2e-29 131.0 97 68.0
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 5.2e-29 131.0 108 61.1
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 6.8e-29 130.6 99 62.6
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.5e-28 129.4 101 62.4
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 2.0e-28 129.0 99 66.7
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 2.0e-28 129.0 102 64.7
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 2.6e-28 128.6 101 60.4
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 4.4e-28 127.9 89 69.7
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 5.7e-28 127.5 104 64.4
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 9.8e-28 126.7 99 64.6
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 9.8e-28 126.7 99 65.7
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 1.3e-27 126.3 90 67.8
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.3e-27 126.3 99 65.7
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.3e-27 126.3 94 69.1
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 1.7e-27 125.9 101 63.4
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 2.9e-27 125.2 90 65.6
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 3.7e-27 124.8 98 65.3
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 6.4e-27 124.0 97 64.9
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 6.4e-27 124.0 97 64.9
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 8.3e-27 123.6 89 69.7
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 2.4e-26 122.1 127 55.1
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 4.1e-26 121.3 87 69.0
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.0e-26 120.6 90 67.8
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.2e-25 119.8 87 63.2
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 2.7e-25 118.6 99 61.6
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.5e-25 118.2 89 64.0
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 3.5e-25 118.2 89 70.8
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 5.9e-25 117.5 75 70.7
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 7.8e-25 117.1 100 61.0
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.0e-24 116.7 99 60.6
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.3e-24 115.5 90 66.7
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.1e-23 113.2 90 60.0
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 3.6e-22 108.2 88 63.6
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 1.7e-19 99.4 77 61.0
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.1e-18 96.7 50 78.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.4e-18 96.3 74 66.2
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 1.9e-18 95.9 73 68.5
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 7.0e-18 94.0 79 58.2
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.7e-17 92.0 109 49.5
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 4.6e-17 91.3 75 64.0
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 9.5e-15 83.6 75 54.7
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 1.2e-14 83.2 75 56.0
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 2.1e-14 82.4 86 50.0
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 3.6e-14 81.6 102 52.0
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 8.1e-14 80.5 74 54.1
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 2.3e-13 79.0 74 60.8
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 2.6e-12 75.5 72 58.3
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 7.5e-12 73.9 67 56.7
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 9.9e-12 73.6 54 66.7
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 7.1e-10 67.4 94 44.7
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 9.2e-10 67.0 35 77.1
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.7e-09 65.5 71 45.1
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 1.1e-07 60.1 51 68.6
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 1.1e-07 60.1 51 68.6
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 1.1e-07 60.1 86 38.4
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 3.3e-07 58.5 46 56.5


User provided reference genes

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