Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047048 Camellia sinensis var. sinensis HOM05D001560 ORTHO05D003613 4.7e-216 754.2 373 100.0
Dinv06700 Davidia involucrata HOM05D001560 ORTHO05D003613 6.5e-141 504.6 435 65.1
Lj2C1229T3 Lonicera japonica HOM05D001560 ORTHO05D003613 8.5e-141 504.2 466 61.8
Actinidia34853 Actinidia chinensis HOM05D001560 ORTHO05D003613 3.6e-139 498.8 467 61.5
Hma1.2p1_0261F.1_g105120 Hydrangea macrophylla HOM05D001560 ORTHO05D003613 3.7e-136 488.8 462 61.3
Nn1g10043 Nelumbo nucifera HOM05D001560 ORTHO05D003613 8.2e-136 487.6 467 60.2
Nn4g26006 Nelumbo nucifera HOM05D001560 ORTHO05D003613 8.2e-136 487.6 467 60.2
CANSAT16G0039 Cannabis sativa HOM05D001560 ORTHO05D003613 1.6e-134 483.4 462 60.6
HanXRQMTg0579631 Helianthus annuus HOM05D001560 ORTHO05D003613 7.7e-134 481.1 467 59.5
Sc04g0005570 Simmondsia chinensis HOM05D001560 ORTHO05D003613 3.2e-132 475.7 469 59.9
DCAR_032442 Daucus carota HOM05D001560 ORTHO05D003613 2.7e-131 472.6 467 58.9
AUR62042345 Chenopodium quinoa HOM05D001560 ORTHO05D003613 1.0e-130 470.7 467 59.3
LjContig00315g0001212 Lotus japonicus HOM05D001560 ORTHO05D003613 6.8e-130 468.0 471 58.6
ATMG00520 Arabidopsis thaliana HOM05D001560 ORTHO05D003613 1.5e-129 466.8 467 58.9
BolSC28t60329H Brassica oleracea HOM05D001560 ORTHO05D003613 2.6e-129 466.1 468 58.5
BraSC77t46661Z Brassica rapa HOM05D001560 ORTHO05D003613 2.6e-129 466.1 468 58.5
CAN.G1180.6 Capsicum annuum HOM05D001560 ORTHO05D003613 2.6e-129 466.1 462 58.7
Ah.10g028460 Amaranthus hybridus HOM05D001560 ORTHO05D003613 4.4e-129 465.3 467 58.0
CARHR282880 Cardamine hirsuta HOM05D001560 ORTHO05D003613 3.7e-128 462.2 467 58.5
Lalb_Chr00c21g0406061 Lupinus albus HOM05D001560 ORTHO05D003613 3.8e-125 452.2 468 57.5
Lalb_Chr00c39g0409051 Lupinus albus HOM05D001560 ORTHO05D003613 3.8e-125 452.2 468 57.5
Lalb_Chr00c39g0409231 Lupinus albus HOM05D001560 ORTHO05D003613 3.8e-125 452.2 468 57.5
Lalb_Chr00c51g0413141 Lupinus albus HOM05D001560 ORTHO05D003613 3.8e-125 452.2 468 57.5
Sp3g25920 Schrenkiella parvula HOM05D001560 ORTHO05D003613 4.2e-124 448.7 457 58.4
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 9.5e-124 447.6 451 59.0
Hund27586 Selenicereus undatus HOM05D001560 ORTHO05D003613 4.7e-123 445.3 464 57.3
Hund27816 Selenicereus undatus HOM05D001560 ORTHO05D003613 4.7e-123 445.3 464 57.3
Hund27900 Selenicereus undatus HOM05D001560 ORTHO05D003613 4.7e-123 445.3 464 57.3
Hund28069 Selenicereus undatus HOM05D001560 ORTHO05D003613 4.7e-123 445.3 464 57.3
Hund28866 Selenicereus undatus HOM05D001560 ORTHO05D003613 4.7e-123 445.3 464 57.3
Hund28883 Selenicereus undatus HOM05D001560 ORTHO05D003613 4.7e-123 445.3 464 57.3
Hund12886 Selenicereus undatus HOM05D001560 ORTHO05D003613 1.0e-122 444.1 464 57.5
Hund29205 Selenicereus undatus HOM05D001560 ORTHO05D003613 1.4e-122 443.7 464 57.1
Hund28082 Selenicereus undatus HOM05D001560 ORTHO05D003613 5.2e-122 441.8 463 57.0
ClCG10G004690 Citrullus lanatus HOM05D001560 ORTHO05D003613 8.9e-122 441.0 455 56.9
PGR028G0023 Punica granatum HOM05D001560 ORTHO05D003613 6.3e-120 434.9 452 56.6
PGR071G0003 Punica granatum HOM05D001560 ORTHO05D003613 6.3e-120 434.9 452 56.6
SabraMtG0009600 Salix brachista HOM05D001560 ORTHO05D003613 5.0e-117 425.2 469 55.9
Sed0013276 Sechium edule HOM05D001560 ORTHO05D003613 1.2e-115 420.6 374 63.6
arahy.Tifrunner.gnm1.ann1.7G246T Arachis hypogaea HOM05D001560 ORTHO05D003613 1.4e-114 417.2 379 64.1
arahy.Tifrunner.gnm1.ann1.JTWL6Q Arachis hypogaea HOM05D001560 ORTHO05D003613 1.4e-114 417.2 379 64.1
Nn1g09975 Nelumbo nucifera HOM05D001560 ORTHO05D003613 5.7e-113 411.8 417 57.1
CDE02G0303 Ceratophyllum demersum HOM05D001560 ORTHO05D003613 1.1e-111 407.5 383 61.9
RhsimMtG0005500 Rhododendron simsii HOM05D001560 ORTHO05D003613 1.4e-111 407.1 344 67.4
Lsat_1_v5_gn_5_16600 Lactuca sativa HOM05D001560 ORTHO05D003613 5.6e-108 395.2 372 61.8
COL.COLO4_04089 Corchorus olitorius HOM05D001560 ORTHO05D003613 4.9e-104 382.1 345 63.8
Ca_14833_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 1.4e-103 380.6 407 56.0
Ca_22165_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 1.4e-103 380.6 407 56.0
Cpa.g.sc89.22 Carica papaya HOM05D001560 ORTHO05D003613 3.5e-102 375.9 402 56.0
HanXRQChr10g0297191 Helianthus annuus HOM05D001560 ORTHO05D003613 4.6e-102 375.6 355 60.6
Sopen11g018210 Solanum pennellii HOM05D001560 ORTHO05D003613 6.6e-101 371.7 400 54.8
Sed0003843 Sechium edule HOM05D001560 ORTHO05D003613 3.3e-100 369.4 373 57.4
Lsat_1_v5_gn_3_89520 Lactuca sativa HOM05D001560 ORTHO05D003613 2.0e-97 360.1 311 65.0
unitig_87.g27957 Utricularia gibba HOM05D001560 ORTHO05D003613 1.3e-96 357.5 396 54.5
SHI45575 Sapria himalayana HOM05D001560 ORTHO05D003613 2.2e-96 356.7 445 51.9
SHI38463 Sapria himalayana HOM05D001560 ORTHO05D003613 2.7e-94 349.7 363 57.6
Gorai.005G104100 Gossypium raimondii HOM05D001560 ORTHO05D003613 3.9e-93 345.9 308 63.6
TPR.G162 Trifolium pratense HOM05D001560 ORTHO05D003613 1.8e-90 337.0 329 59.3
AUR62038665 Chenopodium quinoa HOM05D001560 ORTHO05D003613 4.0e-90 335.9 316 60.8
Hund29084 Selenicereus undatus HOM05D001560 ORTHO05D003613 4.0e-90 335.9 364 53.6
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 5.2e-90 335.5 409 51.6
Potri.007G062302 Populus trichocarpa HOM05D001560 ORTHO05D003613 8.9e-90 334.7 404 52.0
CsaV3_UNG210420 Cucumis sativus L. HOM05D001560 ORTHO05D003613 1.0e-85 321.2 414 48.8
SHI35482 Sapria himalayana HOM05D001560 ORTHO05D003613 9.0e-82 308.1 387 52.5
SHI38584 Sapria himalayana HOM05D001560 ORTHO05D003613 2.6e-81 306.6 449 47.2
HanXRQChr09g0251121 Helianthus annuus HOM05D001560 ORTHO05D003613 1.3e-80 304.3 302 58.9
AL3G44410 Arabidopsis lyrata HOM05D001560 ORTHO05D003613 1.7e-80 303.9 298 61.1
arahy.Tifrunner.gnm1.ann1.K9CWE8 Arachis hypogaea HOM05D001560 ORTHO05D003613 1.7e-80 303.9 339 55.2
SHI38561 Sapria himalayana HOM05D001560 ORTHO05D003613 3.8e-80 302.8 449 47.0
HanXRQChr01g0012841 Helianthus annuus HOM05D001560 ORTHO05D003613 2.4e-79 300.1 390 49.2
SHI36270 Sapria himalayana HOM05D001560 ORTHO05D003613 1.2e-78 297.7 415 47.0
CAN.G745.35 Capsicum annuum HOM05D001560 ORTHO05D003613 1.0e-77 294.7 262 62.2
Nitab4.5_0000886g0180 Nicotiana tabacum HOM05D001560 ORTHO05D003613 1.7e-72 277.3 438 45.0
SHI36625 Sapria himalayana HOM05D001560 ORTHO05D003613 6.4e-72 275.4 406 44.6
SHI35000 Sapria himalayana HOM05D001560 ORTHO05D003613 1.1e-71 274.6 328 54.6
SHI49510 Sapria himalayana HOM05D001560 ORTHO05D003613 3.5e-70 269.6 326 52.8
Hund12883 Selenicereus undatus HOM05D001560 ORTHO05D003613 5.1e-69 265.8 366 47.8
Peaxi162Scf00348g00514 Petunia axillaris HOM05D001560 ORTHO05D003613 5.8e-65 252.3 321 50.5
Solyc09g056070.1 Solanum lycopersicum HOM05D001560 ORTHO05D003613 1.7e-64 250.8 341 47.2
SHI34996 Sapria himalayana HOM05D001560 ORTHO05D003613 1.9e-63 247.3 298 52.7
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 6.0e-62 242.3 230 61.7
Nn4g26009 Nelumbo nucifera HOM05D001560 ORTHO05D003613 1.5e-60 237.7 203 64.5
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 2.6e-57 226.9 220 60.5
Nitab4.5_0001152g0950 Nicotiana tabacum HOM05D001560 ORTHO05D003613 3.4e-57 226.5 307 50.5
Peaxi162Scf00622g00016 Petunia axillaris HOM05D001560 ORTHO05D003613 7.6e-57 225.3 202 62.4
Nitab4.5_0000307g0340 Nicotiana tabacum HOM05D001560 ORTHO05D003613 8.4e-56 221.9 178 65.7
SHI36372 Sapria himalayana HOM05D001560 ORTHO05D003613 3.2e-55 219.9 262 55.0
CAN.G1321.15 Capsicum annuum HOM05D001560 ORTHO05D003613 1.2e-54 218.0 244 54.9
SHI36584 Sapria himalayana HOM05D001560 ORTHO05D003613 1.1e-50 204.9 311 46.0
Solyc11g030890.3 Solanum lycopersicum HOM05D001560 ORTHO05D003613 1.8e-50 204.1 190 62.6
ClCG06G008570 Citrullus lanatus HOM05D001560 ORTHO05D003613 5.3e-50 202.6 296 47.0
Lsat_1_v5_gn_4_121001 Lactuca sativa HOM05D001560 ORTHO05D003613 2.6e-49 200.3 178 62.9
SHI46061 Sapria himalayana HOM05D001560 ORTHO05D003613 1.1e-47 194.9 257 49.4
BraSC48t46281Z Brassica rapa HOM05D001560 ORTHO05D003613 1.4e-47 194.5 238 50.0
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 2.5e-47 193.7 432 39.1
CAN.G85.15 Capsicum annuum HOM05D001560 ORTHO05D003613 3.2e-47 193.4 197 57.9
SHI38843 Sapria himalayana HOM05D001560 ORTHO05D003613 1.4e-45 188.0 169 63.9
SHI37900 Sapria himalayana HOM05D001560 ORTHO05D003613 8.8e-45 185.3 404 37.6
PSO675G8388 Papaver somniferum HOM05D001560 ORTHO05D003613 4.8e-43 179.5 253 47.8
SHI40317 Sapria himalayana HOM05D001560 ORTHO05D003613 6.3e-43 179.1 406 36.9
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 3.4e-41 173.3 378 37.0
SHI34998 Sapria himalayana HOM05D001560 ORTHO05D003613 4.5e-41 172.9 147 63.9
Nitab4.5_0000307g0350 Nicotiana tabacum HOM05D001560 ORTHO05D003613 2.2e-40 170.6 221 48.9
Nn4g26010 Nelumbo nucifera HOM05D001560 ORTHO05D003613 6.5e-40 169.1 150 63.3
ClCG10G004710 Citrullus lanatus HOM05D001560 ORTHO05D003613 8.5e-40 168.7 241 45.6
Lsat_1_v5_gn_6_108960 Lactuca sativa HOM05D001560 ORTHO05D003613 1.9e-39 167.5 171 53.8
SHI43894 Sapria himalayana HOM05D001560 ORTHO05D003613 2.5e-39 167.2 304 40.8
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 7.2e-39 165.6 186 52.2
Hma1.2p1_0079F.1_g041900 Hydrangea macrophylla HOM05D001560 ORTHO05D003613 1.6e-38 164.5 98 85.7
ATR0693G347 Amborella trichopoda HOM05D001560 ORTHO05D003613 6.1e-38 162.5 177 55.9
CAN.G497.19 Capsicum annuum HOM05D001560 ORTHO05D003613 8.8e-37 158.7 93 86.0
BolSC28t60405H Brassica oleracea HOM05D001560 ORTHO05D003613 1.1e-36 158.3 109 77.1
BolSC28t60433H Brassica oleracea HOM05D001560 ORTHO05D003613 1.1e-36 158.3 109 77.1
Hund29341 Selenicereus undatus HOM05D001560 ORTHO05D003613 2.4e-34 150.6 175 54.9
Nitab4.5_0002739g0180 Nicotiana tabacum HOM05D001560 ORTHO05D003613 4.1e-34 149.8 106 74.5
Sopen09g021510 Solanum pennellii HOM05D001560 ORTHO05D013554 5.9e-33 146.0 100 77.0
Rhsim07G0227200 Rhododendron simsii HOM05D000187 ORTHO05D000230 1.4e-31 141.4 78 89.7
TWI75G1342 Tripterygium wilfordii HOM05D001560 ORTHO05D003613 4.7e-30 136.3 130 60.0
Peaxi162Scf00348g00515 Petunia axillaris HOM05D001560 ORTHO05D003613 6.1e-30 136.0 96 72.9
Ca_14832_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 1.4e-29 134.8 98 75.5
Ca_22164_v3 Cicer arietinum L. HOM05D001560 ORTHO05D010874 1.4e-29 134.8 98 75.5
SHI27345 Sapria himalayana HOM05D001560 ORTHO05D003613 8.8e-29 132.1 102 66.7
SHI54049 Sapria himalayana HOM05D001560 ORTHO05D003613 1.3e-27 128.3 102 65.7
SHI36374 Sapria himalayana HOM05D001560 ORTHO05D003613 1.7e-27 127.9 150 48.7
SHI37134 Sapria himalayana HOM05D001560 ORTHO05D003613 3.7e-27 126.7 152 46.1
GSVIVG01006203001 Vitis vinifera HOM05D001560 ORTHO05D003613 4.8e-27 126.3 140 50.7
Solyc09g057820.1 Solanum lycopersicum HOM05D001560 ORTHO05D003613 1.4e-26 124.8 133 52.6
Psat1g001600 Pisum sativum HOM05D001560 ORTHO05D003613 3.5e-25 120.2 76 81.6
SHI37382 Sapria himalayana HOM05D001560 ORTHO05D003613 1.7e-24 117.9 177 45.2
SHI36773 Sapria himalayana HOM05D001560 ORTHO05D010994 7.2e-23 112.5 88 68.2
SHI36784 Sapria himalayana HOM05D001560 ORTHO05D010994 7.2e-23 112.5 88 68.2
SHI51797 Sapria himalayana HOM05D001560 ORTHO05D003613 3.6e-22 110.2 99 60.6
HanXRQChr13g0415511 Helianthus annuus HOM05D001560 ORTHO05D003613 1.8e-21 107.8 111 59.5
SHI38532 Sapria himalayana HOM05D001560 ORTHO05D003613 1.8e-21 107.8 176 42.6
CSS0014898 Camellia sinensis var. sinensis HOM05D001560 ORTHO05D003613 2.6e-20 104.0 71 73.2
GSVIVG01000512001 Vitis vinifera HOM05D001560 ORTHO05D003613 5.7e-20 102.8 60 80.0
SEGI_16710 Sequoiadendron giganteum HOM05D001560 ORTHO05D003613 1.3e-19 101.7 403 29.5
SEGI_26668 Sequoiadendron giganteum HOM05D001560 ORTHO05D003613 8.2e-19 99.0 403 29.0
C01p34990 Brassica napus HOM05D001560 ORTHO05D003613 2.4e-18 97.4 125 49.6
Solyc11g030880.1 Solanum lycopersicum HOM05D001560 ORTHO05D003613 7.0e-18 95.9 65 70.8
SHI35186 Sapria himalayana HOM05D000743 ORTHO05D000580 9.1e-18 95.5 73 63.0
Ca_22176_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 2.7e-17 94.0 71 74.6
SHI53219 Sapria himalayana HOM05D001560 ORTHO05D003613 4.5e-17 93.2 76 60.5
CARHR287190 Cardamine hirsuta HOM05D001560 ORTHO05D003613 1.0e-16 92.0 240 33.8
TPR.G33338 Trifolium pratense HOM05D001560 ORTHO05D003613 5.5e-15 86.3 77 64.9
HanXRQChr08g0236181 Helianthus annuus HOM05D001560 ORTHO05D003613 3.6e-14 83.6 93 54.8
SHI38214 Sapria himalayana HOM05D001560 ORTHO05D003613 8.0e-14 82.4 50 74.0
Peaxi162Scf00931g00038 Petunia axillaris HOM05D001560 ORTHO05D003613 1.8e-13 81.3 177 37.9
Solyc01g011060.1 Solanum lycopersicum HOM05D001560 ORTHO05D003613 1.5e-12 78.2 83 53.0
arahy.Tifrunner.gnm1.ann1.K50RJN Arachis hypogaea HOM05D005210 ORTHO05D011782 2.6e-12 77.4 42 85.7
CAN.G623.2 Capsicum annuum HOM05D001560 ORTHO05D003613 2.8e-11 73.9 110 42.7
Solyc11g030900.1 Solanum lycopersicum HOM05D001560 ORTHO05D003613 3.1e-10 70.5 85 49.4
Nitab4.5_0001781g0110 Nicotiana tabacum HOM05D001560 ORTHO05D010811 5.4e-10 69.7 41 85.4
BcaC01g01473 Brassica carinata HOM05D001560 ORTHO05D003613 1.6e-09 68.2 40 77.5
C03p92380 Brassica napus HOM05D001560 ORTHO05D003613 1.6e-09 68.2 40 77.5
SHI37067 Sapria himalayana HOM05D001560 ORTHO05D010994 3.5e-09 67.0 40 72.5
CAN.G505.5 Capsicum annuum HOM05D001560 ORTHO05D003613 2.9e-08 63.9 46 67.4
Solyc09g057810.1 Solanum lycopersicum HOM05D001560 ORTHO05D003613 6.6e-08 62.8 43 67.4
arahy.Tifrunner.gnm1.ann1.VJ3LFE Arachis hypogaea HOM05D005210 ORTHO05D011782 2.5e-07 60.8 65 52.3
Nitab4.5_0000280g0190 Nicotiana tabacum HOM05D001560 ORTHO05D003613 4.2e-07 60.1 46 65.2
SHI44984 Sapria himalayana HOM05D001560 ORTHO05D003613 1.6e-06 58.2 203 34.5
SHI45394 Sapria himalayana HOM05D001560 ORTHO05D003613 4.7e-06 56.6 103 35.9


User provided reference genes

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