Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.7e-165 585.9 288 100.0
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.1e-159 566.6 302 94.0
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 4.9e-104 381.7 272 71.7
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 6.4e-104 381.3 278 70.5
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 3.3e-100 369.0 269 69.5
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.4e-95 353.6 272 68.4
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.2e-86 323.9 273 61.5
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.7e-86 322.8 273 61.9
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 1.9e-84 316.6 273 59.7
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.7e-84 315.1 273 59.7
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 1.3e-83 313.9 273 59.3
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-83 313.9 273 59.3
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-83 313.9 273 59.3
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 2.1e-83 313.2 273 59.7
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.1e-82 310.8 273 60.8
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.4e-82 310.5 274 58.8
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 2.4e-82 309.7 275 58.9
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 2.4e-82 309.7 272 60.3
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.1e-82 308.9 273 59.0
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 4.1e-82 308.9 273 60.1
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.5e-81 307.0 273 58.2
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 4.5e-81 305.4 275 59.6
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.3e-80 303.9 273 59.3
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 3.8e-80 302.4 289 56.1
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 8.5e-80 301.2 273 59.0
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 1.1e-79 300.8 273 58.2
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 4.2e-79 298.9 274 61.3
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 5.5e-79 298.5 274 59.1
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 3.6e-78 295.8 273 58.6
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 4.6e-78 295.4 274 57.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 6.1e-78 295.0 274 57.3
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 7.9e-78 294.7 273 59.3
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 7.9e-78 294.7 273 57.9
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.3e-77 293.9 274 56.9
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 3.9e-77 292.4 273 59.3
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 8.7e-77 291.2 273 57.9
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.5e-76 290.4 269 58.4
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.9e-76 290.0 273 58.6
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 4.3e-76 288.9 273 56.0
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 5.7e-76 288.5 273 56.4
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 4.1e-74 282.3 273 55.3
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 4.5e-73 278.9 273 55.7
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 5.9e-73 278.5 274 56.2
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 7.7e-73 278.1 268 55.2
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.3e-72 277.3 272 55.1
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.7e-72 276.9 274 55.1
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 2.2e-72 276.6 271 53.5
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.8e-72 275.8 273 54.9
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 6.5e-72 275.0 249 59.4
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 8.5e-72 274.6 277 55.2
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 8.5e-72 274.6 274 54.0
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 8.5e-72 274.6 273 53.1
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 1.1e-71 274.2 273 54.9
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.5e-71 273.1 280 54.3
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 4.2e-71 272.3 273 54.9
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 5.5e-71 271.9 273 54.2
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.6e-70 269.2 274 54.4
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 1.0e-69 267.7 274 53.3
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 3.0e-69 266.2 274 53.6
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 3.9e-69 265.8 273 54.6
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 6.7e-69 265.0 273 53.8
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 6.7e-69 265.0 268 54.5
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 1.5e-68 263.8 276 51.4
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 2.0e-68 263.5 273 55.7
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 5.7e-68 261.9 274 53.3
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 9.7e-68 261.2 278 54.7
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 9.7e-68 261.2 275 52.4
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.3e-67 260.8 273 54.6
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 4.8e-67 258.8 273 53.8
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.1e-66 257.7 273 49.5
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 2.4e-66 256.5 274 51.5
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 4.1e-66 255.8 275 49.8
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 4.1e-66 255.8 277 52.7
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 2.0e-65 253.4 276 52.2
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 2.6e-65 253.1 274 52.6
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.6e-65 253.1 257 54.1
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 3.4e-65 252.7 277 53.8
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 7.7e-65 251.5 277 50.5
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 7.7e-65 251.5 268 52.6
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.3e-64 250.8 277 50.9
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 2.2e-64 250.0 274 53.3
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 3.8e-64 249.2 271 52.4
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 5.0e-64 248.8 280 50.7
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 8.5e-64 248.1 275 50.5
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.9e-63 246.9 278 52.5
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 4.2e-63 245.7 250 51.6
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 5.5e-63 245.4 278 52.5
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 2.7e-62 243.0 277 50.9
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 2.7e-62 243.0 275 49.8
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 2.7e-62 243.0 280 51.4
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 3.6e-62 242.7 282 50.7
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 6.1e-62 241.9 285 49.1
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 6.1e-62 241.9 281 51.2
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 7.9e-62 241.5 277 49.8
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.0e-61 241.1 281 51.2
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.4e-61 240.7 235 54.0
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.8e-61 240.4 279 51.6
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 2.3e-61 240.0 283 51.6
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 5.2e-61 238.8 281 50.9
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 5.2e-61 238.8 282 51.4
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 5.2e-61 238.8 281 50.9
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 1.5e-60 237.3 281 50.5
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 2.0e-60 236.9 275 50.9
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 5.7e-60 235.3 282 50.7
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 5.7e-60 235.3 280 49.6
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 5.7e-60 235.3 277 49.5
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 2.8e-59 233.0 275 50.2
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 2.8e-59 233.0 278 50.0
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 1.8e-58 230.3 269 48.0
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.2e-57 227.6 174 63.8
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 2.6e-57 226.5 269 47.6
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 1.0e-56 224.6 281 49.1
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.9e-56 223.0 269 46.8
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 6.5e-56 221.9 264 47.3
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 8.5e-56 221.5 270 49.3
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 9.4e-55 218.0 229 53.3
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 2.1e-54 216.9 262 51.5
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 2.1e-54 216.9 269 45.7
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 3.6e-54 216.1 275 46.9
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 1.8e-53 213.8 263 47.5
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.5e-52 210.7 271 45.0
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 1.8e-50 203.8 202 55.9
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 4.1e-50 202.6 273 45.4
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 5.9e-49 198.7 271 43.2
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.9e-48 196.4 275 43.6
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.1e-47 194.5 282 41.1
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 7.2e-47 191.8 285 40.7
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 5.4e-42 175.6 276 39.5
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.0e-40 171.4 193 47.7
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 4.2e-39 166.0 273 41.0
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.6e-38 162.9 186 48.4
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.9e-33 145.6 204 44.6
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 2.3e-32 143.7 282 35.1
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 6.1e-30 135.6 276 31.5
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.4e-28 129.4 155 48.4
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 2.3e-24 117.1 246 32.9
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.5e-23 113.6 140 45.7
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 3.3e-23 113.2 257 31.1
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 3.6e-22 109.8 156 39.7
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.0e-21 108.2 288 26.0
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 6.4e-19 99.0 93 54.8
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 8.3e-19 98.6 105 54.3
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.3e-19 98.6 73 64.4
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 5.0e-16 89.4 72 65.3
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 8.9e-13 78.6 104 47.1
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.9e-11 73.6 78 51.3
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 8.3e-11 72.0 235 25.5
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.1e-09 67.4 96 42.7
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.3e-08 64.7 137 31.4


User provided reference genes

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