Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046995 Camellia sinensis var. sinensis HOM05D005166 ORTHO05D006120 0.0e+00 1202.2 852 100.0
Dinv34287 Davidia involucrata HOM05D005166 ORTHO05D006120 2.3e-205 719.9 904 66.4
Rhsim13G0077000 Rhododendron simsii HOM05D005166 ORTHO05D006120 1.1e-199 701.0 892 70.5
vmacro03027 Vaccinium macrocarpon HOM05D005166 ORTHO05D006120 3.9e-189 666.0 984 63.6
Dinv42991 Davidia involucrata HOM05D005166 ORTHO05D006120 3.4e-185 652.9 860 68.0
Dinv43106 Davidia involucrata HOM05D005166 ORTHO05D006120 3.4e-185 652.9 860 68.0
Dinv17047 Davidia involucrata HOM05D005166 ORTHO05D006120 4.1e-183 646.0 864 67.0
Hma1.2p1_1664F.1_g296420 Hydrangea macrophylla HOM05D005166 ORTHO05D006120 1.8e-170 604.0 917 63.4
Actinidia33768 Actinidia chinensis HOM05D005166 ORTHO05D006120 2.5e-164 583.6 804 68.5
Nn2g11213 Nelumbo nucifera HOM05D005166 ORTHO05D006120 5.0e-136 489.6 934 55.6
TAR633G1610 Trochodendron aralioides HOM05D005166 ORTHO05D006120 5.7e-132 476.1 961 54.3
Potri.009G036900 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.9e-127 461.1 938 53.6
QL01p029224 Quercus lobata HOM05D005166 ORTHO05D006120 8.8e-125 452.2 950 52.2
GSVIVG01024906001 Vitis vinifera HOM05D005166 ORTHO05D006120 2.0e-124 451.1 811 54.1
TAR636G0020 Trochodendron aralioides HOM05D005166 ORTHO05D006120 3.7e-123 446.8 958 52.9
Haze_24175 Corylus avellana HOM05D005166 ORTHO05D006120 6.9e-122 442.6 929 53.3
TAR636G0138 Trochodendron aralioides HOM05D005166 ORTHO05D006120 2.0e-121 441.0 959 52.7
Haze_24170 Corylus avellana HOM05D005166 ORTHO05D006120 7.7e-121 439.1 920 53.0
Atru.chr3.3993_Atru.chr3.3994 Acer truncatum HOM05D005166 ORTHO05D006120 1.7e-120 438.0 985 49.3
CiPaw.13G089200 Carya illinoinensis HOM05D005166 ORTHO05D006120 1.3e-112 411.8 946 51.8
Prupe.6G070300 Prunus persica HOM05D005166 ORTHO05D006120 1.3e-112 411.8 907 50.7
Manes.01G169300 Manihot esculenta HOM05D005166 ORTHO05D006120 1.5e-111 408.3 999 51.2
Sabra09G0026100 Salix brachista HOM05D005166 ORTHO05D006120 5.2e-109 399.8 805 50.6
Peaxi162Scf00676g00220 Petunia axillaris HOM05D005166 ORTHO05D006120 8.8e-109 399.1 926 52.6
Potri.001G244600 Populus trichocarpa HOM05D005166 ORTHO05D006120 1.3e-107 395.2 886 52.3
Nitab4.5_0001999g0010 Nicotiana tabacum HOM05D005166 ORTHO05D006120 3.7e-107 393.7 907 48.4
MBI14_g11598_MAGBIO Magnolia biondii HOM05D005166 ORTHO05D006120 6.3e-107 392.9 950 49.8
MD11G1094700 Malus domestica HOM05D005166 ORTHO05D006120 6.3e-107 392.9 921 53.9
Nitab4.5_0005248g0020 Nicotiana tabacum HOM05D005166 ORTHO05D006120 2.4e-98 364.4 911 45.2
MD03G1086100 Malus domestica HOM05D005166 ORTHO05D006120 9.1e-98 362.5 901 51.9
RcHm_v2.0_Chr5g0066361 Rosa chinensis HOM05D005166 ORTHO05D006120 4.5e-97 360.1 907 52.0
Sabra16G0148400 Salix brachista HOM05D005166 ORTHO05D006120 5.0e-96 356.7 833 53.1
PGSC0003DMG400027986 Solanum tuberosum HOM05D005166 ORTHO05D006120 1.6e-94 351.7 922 44.9
Ciclev10030390m.g Citrus clementina HOM05D005166 ORTHO05D006120 4.7e-94 350.1 904 52.2
PSO339G5769 Papaver somniferum HOM05D005166 ORTHO05D006120 6.1e-94 349.7 922 49.9
Duzib168G0713 Durio zibethinus HOM05D005166 ORTHO05D006120 1.0e-93 349.0 920 50.9
CAN.G3.46 Capsicum annuum HOM05D005166 ORTHO05D006120 1.7e-91 341.7 827 44.5
Eucgr.B02307 Eucalyptus grandis HOM05D005166 ORTHO05D006120 7.0e-90 336.3 916 49.7
Medtr4g064740 Medicago truncatula HOM05D005166 ORTHO05D006120 1.6e-89 335.1 963 46.3
Sopen09g013470 Solanum pennellii HOM05D005166 ORTHO05D006120 1.1e-87 328.9 946 43.2
Thecc.09G315500 Theobroma cacao HOM05D005166 ORTHO05D006120 1.1e-87 328.9 950 50.4
FAN25G3327 Fragaria x ananassa HOM05D005166 ORTHO05D006120 3.3e-87 327.4 903 48.8
Nn2g13459 Nelumbo nucifera HOM05D005166 ORTHO05D006120 5.6e-87 326.6 864 45.1
FAN16G3680 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.8e-86 324.3 902 51.9
Aqoxy2G02310 Aquilegia oxysepala HOM05D005166 ORTHO05D006120 1.8e-85 321.6 942 49.6
Solyc09g030390.3 Solanum lycopersicum HOM05D005166 ORTHO05D006120 1.8e-85 321.6 954 46.8
FvH4_3g36942 Fragaria vesca HOM05D005166 ORTHO05D006120 8.9e-85 319.3 904 52.2
FAN11G2353 Fragaria x ananassa HOM05D005166 ORTHO05D006120 2.0e-84 318.2 903 52.2
TPR.G23607 Trifolium pratense HOM05D005166 ORTHO05D006120 3.4e-84 317.4 957 47.2
FAN21G1054 Fragaria x ananassa HOM05D005166 ORTHO05D006120 1.7e-83 315.1 901 50.3
COL.COLO4_18578 Corchorus olitorius HOM05D005166 ORTHO05D006120 2.2e-83 314.7 918 50.5
Cc01_g13350 Coffea canephora HOM05D005166 ORTHO05D006120 2.9e-83 314.3 231 76.2
Migut.D00877 Erythranthe guttata HOM05D005166 ORTHO05D006120 6.4e-83 313.2 897 45.7
Lalb_Chr01g0003471 Lupinus albus HOM05D005166 ORTHO05D006120 1.7e-80 305.1 953 45.4
Gorai.013G262700 Gossypium raimondii HOM05D005166 ORTHO05D006120 2.3e-80 304.7 904 51.3
Lalb_Chr19g0137981 Lupinus albus HOM05D005166 ORTHO05D006120 2.3e-80 304.7 879 42.9
Lj3g0025501 Lotus japonicus HOM05D005166 ORTHO05D006120 8.9e-77 292.7 913 47.5
Ca_20616_v3 Cicer arietinum L. HOM05D005166 ORTHO05D006120 2.6e-76 291.2 873 40.3
Gohir.D13G232000 Gossypium hirsutum HOM05D005166 ORTHO05D006120 2.2e-75 288.1 923 48.1
Phvul.011G061700 Phaseolus vulgaris HOM05D005166 ORTHO05D006120 2.9e-75 287.7 965 48.6
arahy.Tifrunner.gnm1.ann1.L8ZXQA Arachis hypogaea HOM05D005166 ORTHO05D006120 6.4e-75 286.6 933 47.5
SGA_v2.0_scaffold111G31544 Striga asiatica HOM05D005166 ORTHO05D006120 6.4e-75 286.6 877 43.3
PGR102G2168 Punica granatum HOM05D005166 ORTHO05D006120 2.4e-74 284.6 932 48.2
ATR0559G187 Amborella trichopoda HOM05D005166 ORTHO05D006120 4.1e-74 283.9 924 43.7
Glyma.12G059700 Glycine max HOM05D005166 ORTHO05D006120 7.0e-74 283.1 922 48.4
Glyma.11G136000 Glycine max HOM05D005166 ORTHO05D006120 1.2e-73 282.3 947 47.7
arahy.Tifrunner.gnm1.ann1.SP769B Arachis hypogaea HOM05D005166 ORTHO05D006120 6.6e-72 276.6 963 46.6
Gohir.A13G226600 Gossypium hirsutum HOM05D005166 ORTHO05D006120 1.1e-71 275.8 910 50.0
HanXRQChr01g0001871 Helianthus annuus HOM05D005166 ORTHO05D006120 3.3e-71 274.2 277 59.9
HanXRQChr08g0237471 Helianthus annuus HOM05D005166 ORTHO05D006120 3.6e-70 270.8 278 60.4
CsaV3_1G034540 Cucumis sativus L. HOM05D005166 ORTHO05D006120 4.7e-70 270.4 252 64.7
Sed0011931 Sechium edule HOM05D005166 ORTHO05D006120 4.0e-69 267.3 260 62.7
Ah.08g220070 Amaranthus hybridus HOM05D005166 ORTHO05D006120 2.6e-68 264.6 293 58.7
MSTRG.21221 Avicennia marina HOM05D005166 ORTHO05D006120 2.6e-68 264.6 900 49.2
HanXRQChr08g0237371 Helianthus annuus HOM05D005166 ORTHO05D006120 2.2e-67 261.5 291 57.7
AUR62001736 Chenopodium quinoa HOM05D005166 ORTHO05D006120 1.2e-65 255.8 927 49.5
Lalb_Chr03g0026441 Lupinus albus HOM05D005166 ORTHO05D006120 1.2e-65 255.8 982 45.7
Cpa.g.sc81.97 Carica papaya HOM05D005166 ORTHO05D006120 1.6e-65 255.4 212 67.9
Hund04921 Selenicereus undatus HOM05D005166 ORTHO05D006120 4.6e-65 253.8 220 65.9
Lsat_1_v5_gn_9_24820 Lactuca sativa HOM05D005166 ORTHO05D006120 7.8e-65 253.1 237 64.6
Os03g0270200 Oryza sativa ssp. japonica HOM05D005166 ORTHO05D006120 1.1e-63 249.2 162 78.4
AL4G23770 Arabidopsis lyrata HOM05D005166 ORTHO05D006120 2.5e-63 248.1 321 53.6
Aa31LG5G7110 Aethionema arabicum HOM05D005166 ORTHO05D006120 7.3e-63 246.5 251 59.4
SEGI_12829 Sequoiadendron giganteum HOM05D005166 ORTHO05D006120 2.4e-61 241.5 212 68.9
CDE07G0344 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 6.8e-61 240.0 870 43.9
Psat7g210320 Pisum sativum HOM05D005166 ORTHO05D006120 6.8e-61 240.0 943 42.3
HPP92_012608 Vanilla planifolia HOM05D005166 ORTHO05D006120 6.8e-61 240.0 140 85.0
THA.LOC104800686 Tarenaya hassleriana HOM05D005166 ORTHO05D006120 5.8e-60 236.9 989 45.9
AUR62020041 Chenopodium quinoa HOM05D005166 ORTHO05D006120 7.6e-60 236.5 135 88.9
SHI05908 Sapria himalayana HOM05D005166 ORTHO05D006120 1.1e-58 232.6 301 52.8
Thhalv10016250m.g Eutrema salsugineum HOM05D005166 ORTHO05D006120 1.9e-58 231.9 216 60.6
Sc12g0001240 Simmondsia chinensis HOM05D005166 ORTHO05D006120 1.9e-58 231.9 948 42.5
VMungo1127G2033 Vigna mungo HOM05D005166 ORTHO05D006120 1.9e-58 231.9 959 47.1
Carub.0004s1023 Capsella rubella HOM05D005166 ORTHO05D006120 3.2e-58 231.1 134 84.3
Pp3c3_30240 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.1e-58 230.7 255 56.1
Pp3c3_30241 Physcomitrium patens HOM05D005166 ORTHO05D006120 4.1e-58 230.7 255 56.1
Pp3c10_18390 Physcomitrium patens HOM05D005166 ORTHO05D006120 7.1e-58 229.9 280 54.3
AagrBONN_evm.TU.Sc2ySwM_117.3439 Anthoceros agrestis HOM05D005166 ORTHO05D006120 2.1e-57 228.4 281 55.5
ECA247G0723 Erigeron canadensis HOM05D005166 ORTHO05D006120 3.5e-57 227.6 911 46.0
Mapoly0063s0002 Marchantia polymorpha HOM05D005166 ORTHO05D006120 4.7e-54 217.2 131 80.9
BcaB02g10233 Brassica carinata HOM05D005166 ORTHO05D006120 8.1e-54 216.5 242 56.6
A05p16120 Brassica napus HOM05D005166 ORTHO05D006120 3.1e-53 214.5 221 59.3
CBR_g50691 Chara braunii HOM05D005166 ORTHO05D006120 2.2e-51 208.4 175 64.6
SHI31247 Sapria himalayana HOM05D005166 ORTHO05D006120 6.4e-51 206.8 223 56.5
BraA05t20522Z Brassica rapa HOM05D005166 ORTHO05D006120 2.4e-50 204.9 277 52.0
CDE06G0141 Ceratophyllum demersum HOM05D005166 ORTHO05D006120 7.1e-50 203.4 170 67.1
SMO144G0189 Selaginella moellendorffii HOM05D005166 ORTHO05D006120 1.2e-49 202.6 134 76.9
EL10Ac7g16070 Beta vulgaris HOM05D005166 ORTHO05D006120 1.7e-48 198.7 933 47.9
Zm00001eb012100 Zea mays HOM05D005166 ORTHO05D006120 1.5e-47 195.7 935 44.0
DCAR_005942 Daucus carota HOM05D005166 ORTHO05D006120 4.3e-47 194.1 907 46.6
Sed0000001 Sechium edule HOM05D005166 ORTHO05D006120 4.3e-47 194.1 219 58.0
unitig_746.g26715 Utricularia gibba HOM05D005166 ORTHO05D006120 7.3e-47 193.4 171 64.9
Sp4g12020 Schrenkiella parvula HOM05D005166 ORTHO05D006120 1.3e-40 172.6 915 43.4
AT2G29210 Arabidopsis thaliana HOM05D005166 ORTHO05D006120 8.7e-40 169.9 921 44.6
SHI33547 Sapria himalayana HOM05D005166 ORTHO05D006120 3.3e-39 167.9 200 52.0
BolC4t23701H Brassica oleracea HOM05D005166 ORTHO05D006120 4.8e-38 164.1 909 43.8
C04p21810 Brassica napus HOM05D005166 ORTHO05D006120 2.6e-36 158.3 889 42.9
SHI32778 Sapria himalayana HOM05D005166 ORTHO05D006120 6.4e-35 153.7 134 64.9
BcaB05g22029 Brassica carinata HOM05D005166 ORTHO05D006120 1.5e-31 142.5 186 48.4
SHI25075 Sapria himalayana HOM05D005166 ORTHO05D006120 1.1e-29 136.3 129 58.1
SHI07724 Sapria himalayana HOM05D005166 ORTHO05D006120 1.2e-28 132.9 184 46.2
Cpa.g.sc81.96 Carica papaya HOM05D005166 ORTHO05D006120 2.9e-27 128.3 398 43.5
Cre16.g678050 Chlamydomonas reinhardtii HOM05D005166 ORTHO05D006120 1.3e-22 112.8 224 39.3
MCO11G283 Micromonas commoda HOM05D005166 ORTHO05D006120 1.1e-21 109.8 143 43.4
Oeu053892.1 Olea europaea HOM05D005166 ORTHO05D006120 9.0e-21 106.7 392 42.9
Zm00001eb397830 Zea mays HOM05D005166 ORTHO05D006120 1.1e-18 99.8 84 66.7
Zm00001eb284680 Zea mays HOM05D005166 ORTHO05D006120 5.1e-16 90.9 131 48.9
Zm00001eb222410 Zea mays HOM05D005166 ORTHO05D006120 4.8e-14 84.3 57 73.7
HanXRQChr08g0237461 Helianthus annuus HOM05D005166 ORTHO05D006120 1.6e-09 69.3 50 70.0
PRCOL_00003490 Prasinoderma coloniale HOM05D005166 ORTHO05D006120 8.8e-08 63.5 167 31.1
SalBow6G2010 Salvia bowleyana HOM05D005166 ORTHO05D006120 8.8e-08 63.5 439 36.9
RcHm_v2.0_Chr1g0354421 Rosa chinensis HOM05D005166 ORTHO05D006120 6.3e-06 57.4 53 56.6
RcHm_v2.0_Chr1g0367371 Rosa chinensis HOM05D005166 ORTHO05D006120 6.3e-06 57.4 53 56.6


User provided reference genes

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