Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.4e-57 225.3 116 100.0
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 4.8e-50 201.1 119 90.8
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.2e-32 143.3 117 70.1
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 2.6e-32 142.1 126 64.3
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 3.5e-32 141.7 125 62.4
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 7.7e-32 140.6 121 64.5
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.3e-31 139.8 122 63.1
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.2e-31 139.0 130 63.1
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 6.5e-31 137.5 120 65.0
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.9e-30 136.0 123 62.6
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 3.6e-29 131.7 134 59.0
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 3.0e-28 128.6 134 56.7
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.9e-28 128.3 123 60.2
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.9e-28 128.3 123 60.2
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 3.9e-28 128.3 130 56.9
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 1.1e-27 126.7 123 59.3
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 2.0e-27 125.9 132 60.6
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.0e-27 125.9 125 56.8
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 5.7e-27 124.4 128 59.4
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.8e-26 122.1 126 54.8
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.8e-26 122.1 125 57.6
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 5.3e-25 117.9 123 55.3
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 9.1e-25 117.1 131 53.4
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.0e-23 113.6 98 58.2
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.0e-23 113.6 98 58.2
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 6.5e-23 110.9 66 78.8
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 8.5e-23 110.5 128 52.3
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 1.1e-22 110.2 136 50.0
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 1.5e-22 109.8 63 82.5
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 1.5e-22 109.8 131 49.6
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.9e-22 109.4 129 49.6
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 2.5e-22 109.0 130 56.9
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 2.5e-22 109.0 66 77.3
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 2.5e-22 109.0 66 77.3
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.2e-22 108.2 130 56.9
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 7.2e-22 107.5 130 56.9
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 9.4e-22 107.1 116 54.3
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.6e-21 106.3 125 50.4
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 2.7e-21 105.5 97 61.9
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.7e-21 104.8 64 75.0
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 8.0e-21 104.0 59 83.1
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 3.0e-20 102.1 58 82.8
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 5.2e-20 101.3 135 48.9
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 6.8e-20 100.9 114 50.9
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 6.8e-20 100.9 59 76.3
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 8.8e-20 100.5 137 47.4
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 8.8e-20 100.5 121 49.6
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 1.2e-19 100.1 62 71.0
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 1.2e-19 100.1 115 53.0
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 1.5e-19 99.8 87 58.6
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 2.0e-19 99.4 64 73.4
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 3.4e-19 98.6 132 44.7
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 5.7e-19 97.8 132 44.7
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 9.7e-19 97.1 66 68.2
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 9.7e-19 97.1 78 61.5
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 9.7e-19 97.1 66 68.2
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 9.7e-19 97.1 66 68.2
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 1.3e-18 96.7 60 80.0
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.3e-18 96.7 114 46.5
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 1.3e-18 96.7 123 50.4
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 1.3e-18 96.7 137 46.7
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 1.7e-18 96.3 111 49.5
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.2e-18 95.9 56 76.8
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 2.8e-18 95.5 113 46.9
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.8e-18 95.5 116 49.1
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 4.8e-18 94.7 66 66.7
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 4.8e-18 94.7 58 74.1
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 6.3e-18 94.4 120 48.3
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.1e-17 93.6 115 45.2
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 1.4e-17 93.2 135 48.1
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 1.8e-17 92.8 116 50.9
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.8e-17 92.8 62 67.7
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 1.8e-17 92.8 98 54.1
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 1.8e-17 92.8 137 48.9
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 1.8e-17 92.8 142 40.8
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 1.8e-17 92.8 67 67.2
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 1.8e-17 92.8 87 55.2
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.4e-17 92.4 109 49.5
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 3.1e-17 92.0 138 47.1
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 4.1e-17 91.7 92 52.2
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 4.1e-17 91.7 138 46.4
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 5.3e-17 91.3 115 46.1
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 5.3e-17 91.3 118 45.8
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 7.0e-17 90.9 76 60.5
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 7.0e-17 90.9 62 66.1
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 2.7e-16 89.0 97 50.5
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 4.5e-16 88.2 56 66.1
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 5.9e-16 87.8 58 65.5
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 7.7e-16 87.4 110 50.0
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 1.0e-15 87.0 112 44.6
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.0e-15 87.0 53 73.6
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 1.0e-15 87.0 63 63.5
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 1.3e-15 86.7 56 64.3
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 1.7e-15 86.3 121 45.5
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 3.8e-15 85.1 110 50.0
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 6.5e-15 84.3 117 44.4
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 8.5e-15 84.0 58 60.3
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 8.5e-15 84.0 65 61.5
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 1.1e-14 83.6 123 41.5
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 1.5e-14 83.2 107 44.9
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.9e-14 82.8 110 44.5
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 3.2e-14 82.0 55 65.5
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 3.2e-14 82.0 79 55.7
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 3.2e-14 82.0 97 54.6
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 5.5e-14 81.3 66 59.1
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 5.5e-14 81.3 70 52.9
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 5.5e-14 81.3 71 59.2
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 7.2e-14 80.9 54 66.7
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 7.2e-14 80.9 57 68.4
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 9.4e-14 80.5 134 39.6
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 9.4e-14 80.5 112 42.9
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 9.4e-14 80.5 134 39.6
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 9.4e-14 80.5 112 42.9
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 9.4e-14 80.5 134 39.6
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 9.4e-14 80.5 112 42.9
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 9.4e-14 80.5 134 39.6
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 9.4e-14 80.5 79 51.9
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-13 80.1 110 43.6
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.2e-13 80.1 70 55.7
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 1.2e-13 80.1 76 52.6
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 1.2e-13 80.1 120 42.5
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 1.6e-13 79.7 134 39.6
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 2.1e-13 79.3 113 44.2
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 2.1e-13 79.3 116 44.0
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 2.7e-13 79.0 49 69.4
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 4.7e-13 78.2 66 56.1
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 6.1e-13 77.8 134 38.1
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.1e-13 77.8 109 49.5
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 8.0e-13 77.4 106 43.4
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 8.0e-13 77.4 56 67.9
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.0e-12 77.0 128 39.1
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 1.8e-12 76.3 133 39.1
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 1.8e-12 76.3 110 42.7
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 1.8e-12 76.3 110 42.7
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 1.8e-12 76.3 105 44.8
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 1.8e-12 76.3 105 44.8
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 3.0e-12 75.5 116 39.7
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 3.0e-12 75.5 133 39.1
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 3.0e-12 75.5 133 39.1
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 3.0e-12 75.5 47 70.2
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 3.0e-12 75.5 124 42.7
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 6.8e-12 74.3 133 38.3
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 6.8e-12 74.3 102 45.1
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 6.8e-12 74.3 49 65.3
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 8.8e-12 73.9 47 68.1
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 8.8e-12 73.9 129 40.3
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.2e-11 73.6 112 43.8
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-11 73.6 101 42.6
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 1.5e-11 73.2 51 64.7
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 1.5e-11 73.2 133 37.6
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 1.5e-11 73.2 113 43.4
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 3.4e-11 72.0 57 57.9
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 4.4e-11 71.6 61 55.7
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 4.4e-11 71.6 61 55.7
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 4.4e-11 71.6 120 43.3
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 4.4e-11 71.6 57 63.2
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 5.7e-11 71.2 101 41.6
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 5.7e-11 71.2 101 41.6
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 5.7e-11 71.2 101 41.6
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 5.7e-11 71.2 62 54.8
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 7.5e-11 70.9 66 53.0
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 1.3e-10 70.1 66 48.5
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 2.2e-10 69.3 68 50.0
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 3.7e-10 68.6 57 57.9
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 4.8e-10 68.2 111 39.6
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 6.3e-10 67.8 77 48.1
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 1.1e-09 67.0 60 55.0
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 1.4e-09 66.6 58 56.9
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 1.8e-09 66.2 123 39.0
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.4e-09 65.9 55 58.2
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.1e-09 65.5 101 45.5
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 4.1e-09 65.1 66 50.0
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 7.0e-09 64.3 112 39.3
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 9.1e-09 63.9 55 52.7
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.2e-08 63.5 44 63.6
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 1.6e-08 63.2 53 56.6
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.5e-08 62.0 103 42.7
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 3.5e-08 62.0 103 42.7
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.7e-07 59.7 61 47.5
GSVIVG01033314001 Vitis vinifera HOM05D003595 ORTHO05D004132 1.7e-07 59.7 37 64.9
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 2.3e-07 59.3 53 56.6
Aqoxy2G00199 Aquilegia oxysepala HOM05D003595 ORTHO05D004132 3.8e-07 58.5 93 39.8
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 1.9e-06 56.2 55 54.5
SGA_v2.0_scaffold18G08279 Striga asiatica HOM05D002383 ORTHO05D002515 7.2e-06 54.3 48 54.2
TPR.G1301 Trifolium pratense HOM05D302815 ORTHO05D004132 9.5e-06 53.9 28 82.1


User provided reference genes

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