Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046981 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 1.8e-51 205.7 105 100.0
Oeu010443.1 Olea europaea HOM05D007107 ORTHO05D009198 2.4e-24 115.5 106 62.3
Oeu009671.1 Olea europaea HOM05D007107 ORTHO05D009198 5.9e-23 110.9 106 59.4
Cfa004630 Carpinus fangiana HOM05D007107 ORTHO05D009198 7.2e-21 104.0 106 51.9
Atru.chr5.2359 Acer truncatum HOM05D007107 ORTHO05D009198 2.1e-20 102.4 81 65.4
Duzib132G0703 Durio zibethinus HOM05D007107 ORTHO05D009198 2.7e-20 102.1 82 61.0
TAR628G1630 Trochodendron aralioides HOM05D007107 ORTHO05D009198 2.7e-20 102.1 82 63.4
Haze_10225 Corylus avellana HOM05D007107 ORTHO05D009198 3.6e-20 101.7 108 53.7
Rhsim11G0151000 Rhododendron simsii HOM05D007107 ORTHO05D009198 3.6e-20 101.7 115 61.7
Prupe.8G144000 Prunus persica HOM05D007107 ORTHO05D009198 6.1e-20 100.9 101 57.4
Thecc.02G116600 Theobroma cacao HOM05D007107 ORTHO05D009198 8.0e-20 100.5 82 62.2
COL.COLO4_32518 Corchorus olitorius HOM05D007107 ORTHO05D009198 1.0e-19 100.1 93 58.1
Duzib248G0083 Durio zibethinus HOM05D007107 ORTHO05D009198 1.0e-19 100.1 79 63.3
Hma1.2p1_1773F.1_g301790 Hydrangea macrophylla HOM05D007107 ORTHO05D009198 1.0e-19 100.1 105 58.1
CsaV3_4G000330 Cucumis sativus L. HOM05D007107 ORTHO05D009198 1.8e-19 99.4 77 62.3
Sopen01g049360 Solanum pennellii HOM05D007107 ORTHO05D009198 1.8e-19 99.4 116 54.3
Solyc01g107090.2 Solanum lycopersicum HOM05D007107 ORTHO05D009198 2.3e-19 99.0 109 55.0
Duzib248G0453 Durio zibethinus HOM05D000446 ORTHO05D000321 5.2e-19 97.8 79 62.0
PGR042G2158 Punica granatum HOM05D007107 ORTHO05D009198 1.5e-18 96.3 105 51.4
CSS0000313 Camellia sinensis var. sinensis HOM05D007107 ORTHO05D009198 2.0e-18 95.9 107 58.9
Nitab4.5_0001105g0070 Nicotiana tabacum HOM05D007107 ORTHO05D009198 2.0e-18 95.9 104 56.7
Ciclev10029615m.g Citrus clementina HOM05D007107 ORTHO05D009198 4.4e-18 94.7 92 55.4
Peaxi162Scf00016g02820 Petunia axillaris HOM05D007107 ORTHO05D009198 4.4e-18 94.7 95 57.9
MELO3C018001.2 Cucumis melo HOM05D007107 ORTHO05D009198 1.7e-17 92.8 78 60.3
TAR376G0510 Trochodendron aralioides HOM05D007107 ORTHO05D009198 1.7e-17 92.8 84 58.3
Nitab4.5_0008075g0020 Nicotiana tabacum HOM05D007107 ORTHO05D009198 2.8e-17 92.0 78 64.1
RcHm_v2.0_Chr6g0253681 Rosa chinensis HOM05D007107 ORTHO05D009198 3.7e-17 91.7 100 53.0
Sopen01g049370 Solanum pennellii HOM05D007107 ORTHO05D009198 4.8e-17 91.3 109 54.1
Solyc01g107100.3 Solanum lycopersicum HOM05D007107 ORTHO05D009198 1.4e-16 89.7 108 50.0
CiPaw.05G017500 Carya illinoinensis HOM05D007107 ORTHO05D009198 1.8e-16 89.4 115 47.8
Gohir.D13G042600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 2.4e-16 89.0 100 54.0
Gorai.013G050500 Gossypium raimondii HOM05D007107 ORTHO05D009198 2.4e-16 89.0 100 54.0
Gohir.A13G046600 Gossypium hirsutum HOM05D007107 ORTHO05D009198 4.1e-16 88.2 100 54.0
Manes.07G058800 Manihot esculenta HOM05D007107 ORTHO05D009198 5.4e-16 87.8 101 50.5
Potri.001G294800 Populus trichocarpa HOM05D007107 ORTHO05D009198 7.0e-16 87.4 82 53.7
PGSC0003DMG400025844 Solanum tuberosum HOM05D007107 ORTHO05D009198 9.1e-16 87.0 91 58.2
Glyma.10G257200 Glycine max HOM05D007107 ORTHO05D009198 1.6e-15 86.3 109 49.5
Gohir.D12G020100 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.6e-15 86.3 104 52.9
QL11p022494 Quercus lobata HOM05D007107 ORTHO05D009198 1.6e-15 86.3 88 51.1
Sed0023372 Sechium edule HOM05D007107 ORTHO05D009198 1.6e-15 86.3 78 56.4
Lalb_Chr06g0165131 Lupinus albus HOM05D007107 ORTHO05D009198 2.0e-15 85.9 70 61.4
Glyma.20G134000 Glycine max HOM05D007107 ORTHO05D009198 2.7e-15 85.5 109 48.6
Gorai.008G020500 Gossypium raimondii HOM05D007107 ORTHO05D009198 3.5e-15 85.1 104 51.9
Eucgr.G01220 Eucalyptus grandis HOM05D007107 ORTHO05D009198 4.5e-15 84.7 86 51.2
Phvul.007G045200 Phaseolus vulgaris HOM05D007107 ORTHO05D009198 5.9e-15 84.3 109 48.6
RcHm_v2.0_Chr6g0253721 Rosa chinensis HOM05D007107 ORTHO05D009198 5.9e-15 84.3 96 52.1
Aqoxy5G00877 Aquilegia oxysepala HOM05D007107 ORTHO05D009198 7.7e-15 84.0 107 50.5
ClCG10G010430 Citrullus lanatus HOM05D007107 ORTHO05D009198 7.7e-15 84.0 75 60.0
Sed0004586 Sechium edule HOM05D007107 ORTHO05D009198 1.0e-14 83.6 78 55.1
Gohir.A12G019900 Gossypium hirsutum HOM05D007107 ORTHO05D009198 1.7e-14 82.8 104 51.0
Lsat_1_v5_gn_9_111721 Lactuca sativa HOM05D007107 ORTHO05D009198 1.7e-14 82.8 88 51.1
Cc02_g19820 Coffea canephora HOM05D007107 ORTHO05D009198 2.9e-14 82.0 97 50.5
Rhsim11G0153200 Rhododendron simsii HOM05D007107 ORTHO05D009198 3.8e-14 81.6 70 68.6
TPR.G27135 Trifolium pratense HOM05D007107 ORTHO05D009198 3.8e-14 81.6 68 63.2
Ah.09g231830 Amaranthus hybridus HOM05D007107 ORTHO05D009198 6.5e-14 80.9 88 56.8
Migut.B00446 Erythranthe guttata HOM05D007107 ORTHO05D009198 6.5e-14 80.9 57 70.2
Cpa.g.sc106.53 Carica papaya HOM05D007107 ORTHO05D009198 8.5e-14 80.5 116 45.7
FAN15G2005 Fragaria x ananassa HOM05D007107 ORTHO05D025431 8.5e-14 80.5 100 52.0
MD10G1105100 Malus domestica HOM05D007107 ORTHO05D009198 1.1e-13 80.1 114 48.2
CiPaw.06G165600 Carya illinoinensis HOM05D007107 ORTHO05D009198 2.5e-13 79.0 102 52.0
DCAR_001690 Daucus carota HOM05D007107 ORTHO05D009198 2.5e-13 79.0 86 51.2
Psat6g214960 Pisum sativum HOM05D007107 ORTHO05D009198 3.2e-13 78.6 93 51.6
Oeu011135.1 Olea europaea HOM05D007107 ORTHO05D009198 4.2e-13 78.2 103 48.5
Ca_11033_v3 Cicer arietinum L. HOM05D007107 ORTHO05D009198 7.2e-13 77.4 68 58.8
Medtr1g106215 Medicago truncatula HOM05D007107 ORTHO05D009198 9.5e-13 77.0 68 60.3
Lj5g0011883 Lotus japonicus HOM05D007107 ORTHO05D009198 1.2e-12 76.6 69 62.3
FAN20G1224 Fragaria x ananassa HOM05D007107 ORTHO05D009198 2.1e-12 75.9 91 51.6
Nn5g30571 Nelumbo nucifera HOM05D007107 ORTHO05D009198 2.1e-12 75.9 79 57.0
ECA234G2040 Erigeron canadensis HOM05D007107 ORTHO05D009198 3.6e-12 75.1 88 52.3
FvH4_2g04290 Fragaria vesca HOM05D007107 ORTHO05D009198 1.8e-11 72.8 100 48.0
FAN24G0068 Fragaria x ananassa HOM05D007107 ORTHO05D009198 1.8e-11 72.8 100 48.0
PGSC0003DMG400042480 Solanum tuberosum HOM05D007107 ORTHO05D009198 1.8e-11 72.8 98 48.0
Lsat_1_v5_gn_5_114201 Lactuca sativa HOM05D007107 ORTHO05D009198 3.0e-11 72.0 76 55.3
PGSC0003DMG400025747 Solanum tuberosum HOM05D007107 ORTHO05D009198 5.2e-11 71.2 99 51.5
EL10Ac8g19388 Beta vulgaris HOM05D007107 ORTHO05D009198 1.5e-10 69.7 83 51.8
Carub.0003s1948 Capsella rubella HOM05D007107 ORTHO05D009198 1.5e-10 69.7 73 54.8
Thhalv10021824m.g Eutrema salsugineum HOM05D007107 ORTHO05D009198 2.0e-10 69.3 91 45.1
FvH4_2g04291 Fragaria vesca HOM05D007107 ORTHO05D025431 4.4e-10 68.2 82 54.9
SalBow6G0491 Salvia bowleyana HOM05D007107 ORTHO05D009198 5.7e-10 67.8 54 68.5
A03p41330 Brassica napus HOM05D007107 ORTHO05D009198 1.3e-09 66.6 72 54.2
BraA03t13287Z Brassica rapa HOM05D007107 ORTHO05D009198 1.3e-09 66.6 98 44.9
MBI16_g29126_MAGBIO Magnolia biondii HOM05D007107 ORTHO05D009198 1.3e-09 66.6 77 46.8
Ah.14g085610 Amaranthus hybridus HOM05D007107 ORTHO05D009198 1.7e-09 66.2 85 55.3
BcaB04g19054 Brassica carinata HOM05D007107 ORTHO05D009198 2.8e-09 65.5 67 56.7
Sc08g0004510 Simmondsia chinensis HOM05D007107 ORTHO05D009198 2.8e-09 65.5 70 57.1
AL3G33050 Arabidopsis lyrata HOM05D007107 ORTHO05D009198 6.3e-09 64.3 73 52.1
CARHR095070 Cardamine hirsuta HOM05D007107 ORTHO05D009198 8.3e-09 63.9 75 50.7
BcaC01g03614 Brassica carinata HOM05D007107 ORTHO05D009198 1.1e-08 63.5 64 54.7
BcaC09g48926 Brassica carinata HOM05D007107 ORTHO05D009198 1.1e-08 63.5 76 51.3
C01p44500 Brassica napus HOM05D007107 ORTHO05D009198 1.1e-08 63.5 76 51.3
BolC1t04415H Brassica oleracea HOM05D007107 ORTHO05D009198 1.1e-08 63.5 76 51.3
ECA240G1449 Erigeron canadensis HOM05D007107 ORTHO05D009198 1.8e-08 62.8 57 52.6
AT3G19615 Arabidopsis thaliana HOM05D007107 ORTHO05D009198 3.1e-08 62.0 73 50.7
C03p50490 Brassica napus HOM05D007107 ORTHO05D009198 3.1e-08 62.0 97 41.2
A01p35080 Brassica napus HOM05D007107 ORTHO05D009198 5.4e-08 61.2 73 50.7
BraA01t03589Z Brassica rapa HOM05D007107 ORTHO05D009198 5.4e-08 61.2 73 50.7
FAN24G0803 Fragaria x ananassa HOM05D007107 ORTHO05D025431 5.4e-08 61.2 76 52.6
BolC3t17339H Brassica oleracea HOM05D007107 ORTHO05D009198 9.2e-08 60.5 68 52.9
BcaB04g20690 Brassica carinata HOM05D007107 ORTHO05D009198 2.0e-07 59.3 72 52.8
CANSAT25G2317 Cannabis sativa HOM05D007107 ORTHO05D009198 2.0e-07 59.3 69 49.3
RcHm_v2.0_Chr6g0253731 Rosa chinensis HOM05D007107 ORTHO05D025431 5.9e-07 57.8 79 41.8
FAN24G0788 Fragaria x ananassa HOM05D007107 ORTHO05D025431 7.7e-07 57.4 74 51.4
Oeu008318.1 Olea europaea HOM05D007107 ORTHO05D009198 2.3e-06 55.8 54 57.4


User provided reference genes

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