Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046970 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 2.2e-121 439.1 248 100.0
CSS0026839 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 3.0e-118 428.7 252 97.6
Actinidia28725 Actinidia chinensis HOM05D006745 ORTHO05D008449 8.0e-103 377.5 210 87.6
Rhsim08G0031100 Rhododendron simsii HOM05D006745 ORTHO05D008449 2.0e-101 372.9 205 87.8
vmacro18434 Vaccinium macrocarpon HOM05D006745 ORTHO05D008449 1.8e-99 366.3 205 85.9
GSVIVG01007224001 Vitis vinifera HOM05D006745 ORTHO05D008449 5.7e-93 344.7 210 79.5
RcHm_v2.0_Chr2g0098641 Rosa chinensis HOM05D006745 ORTHO05D008449 3.1e-91 339.0 206 79.1
MD15G1238900 Malus domestica HOM05D006745 ORTHO05D008449 9.2e-91 337.4 207 79.2
Manes.01G150100 Manihot esculenta HOM05D006745 ORTHO05D008449 3.5e-90 335.5 206 78.2
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 2.3e-89 332.8 208 76.0
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 2.3e-89 332.8 204 76.5
FAN19G0356 Fragaria x ananassa HOM05D006745 ORTHO05D008449 3.8e-89 332.0 206 76.7
Potri.005G109000 Populus trichocarpa HOM05D006745 ORTHO05D008449 3.8e-89 332.0 197 82.2
Cfa007050 Carpinus fangiana HOM05D006745 ORTHO05D008449 5.0e-89 331.6 195 81.0
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 5.0e-89 331.6 204 77.5
QL06p051396 Quercus lobata HOM05D006745 ORTHO05D008449 5.0e-89 331.6 195 81.5
Gohir.A11G041100 Gossypium hirsutum HOM05D006745 ORTHO05D008449 8.6e-89 330.9 199 77.9
Gohir.D11G044400 Gossypium hirsutum HOM05D006745 ORTHO05D008449 8.6e-89 330.9 199 77.9
Gorai.007G047700 Gossypium raimondii HOM05D006745 ORTHO05D008449 8.6e-89 330.9 199 77.9
Ciclev10026368m.g Citrus clementina HOM05D006745 ORTHO05D008449 1.9e-88 329.7 200 77.0
Eucgr.I02315 Eucalyptus grandis HOM05D006745 ORTHO05D008449 3.3e-88 328.9 207 76.8
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 3.3e-88 328.9 205 77.1
Sopen02g012910 Solanum pennellii HOM05D006745 ORTHO05D008449 3.6e-87 325.5 205 74.1
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 6.1e-87 324.7 206 74.8
FAN26G1827 Fragaria x ananassa HOM05D006745 ORTHO05D008449 6.1e-87 324.7 207 75.8
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 8.0e-87 324.3 199 74.9
FAN23G2677 Fragaria x ananassa HOM05D006745 ORTHO05D008449 1.0e-86 323.9 206 75.2
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 1.0e-86 323.9 207 70.5
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 1.8e-86 323.2 206 73.8
DCAR_023133 Daucus carota HOM05D006745 ORTHO05D008449 2.3e-86 322.8 207 74.9
Oeu058205.1 Olea europaea HOM05D006745 ORTHO05D008449 2.3e-86 322.8 200 77.5
Oeu058207.1 Olea europaea HOM05D006745 ORTHO05D008449 2.3e-86 322.8 200 77.5
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 3.1e-86 322.4 204 74.0
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 3.1e-86 322.4 204 74.0
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 3.1e-86 322.4 204 72.5
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 3.1e-86 322.4 206 76.2
Sabra05G0089300 Salix brachista HOM05D006745 ORTHO05D008449 3.1e-86 322.4 189 81.5
CANSAT01G0215 Cannabis sativa HOM05D006745 ORTHO05D008449 4.0e-86 322.0 195 79.0
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 4.0e-86 322.0 199 74.4
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 4.0e-86 322.0 201 75.1
Solyc02g061950.4 Solanum lycopersicum HOM05D006745 ORTHO05D008449 5.2e-86 321.6 205 72.7
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 6.8e-86 321.2 205 73.2
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 8.9e-86 320.9 205 74.6
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 2.0e-85 319.7 205 73.7
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 4.4e-85 318.5 190 77.9
PGSC0003DMG401023885 Solanum tuberosum HOM05D006745 ORTHO05D008449 1.3e-84 317.0 205 71.2
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 1.7e-84 316.6 207 72.9
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 1.7e-84 316.6 207 72.9
CAN.G576.2 Capsicum annuum HOM05D006745 ORTHO05D008449 2.9e-84 315.8 205 71.7
Phvul.002G105300 Phaseolus vulgaris HOM05D006745 ORTHO05D008449 3.7e-84 315.5 207 73.4
VMungo1215G1582 Vigna mungo HOM05D006745 ORTHO05D008449 4.9e-84 315.1 207 74.4
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 6.4e-84 314.7 202 72.3
EL10Ac6g15168 Beta vulgaris HOM05D006745 ORTHO05D008449 8.3e-84 314.3 202 74.3
Glyma.01G163200 Glycine max HOM05D006745 ORTHO05D008449 1.4e-83 313.5 207 73.4
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 2.4e-83 312.8 207 71.0
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 3.2e-83 312.4 201 72.6
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 7.0e-83 311.2 181 81.2
Sed0008453 Sechium edule HOM05D006745 ORTHO05D008449 7.0e-83 311.2 199 71.4
TPR.G25110 Trifolium pratense HOM05D006745 ORTHO05D008449 7.0e-83 311.2 205 70.2
Ca_24936_v3 Cicer arietinum L. HOM05D006745 ORTHO05D008449 9.2e-83 310.8 201 72.6
Lj2g0007566 Lotus japonicus HOM05D006745 ORTHO05D008449 9.2e-83 310.8 195 74.4
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 1.2e-82 310.5 203 70.9
Medtr5g022860 Medicago truncatula HOM05D006745 ORTHO05D008449 2.0e-82 309.7 205 69.8
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 6.0e-82 308.1 199 74.4
Psat2g152400 Pisum sativum HOM05D006745 ORTHO05D008449 7.8e-82 307.8 205 69.8
Prupe.7G173600 Prunus persica HOM05D006745 ORTHO05D008449 7.8e-82 307.8 197 77.2
BcaC04g22675 Brassica carinata HOM05D006745 ORTHO05D008449 1.7e-81 306.6 207 72.0
Nitab4.5_0000188g0160 Nicotiana tabacum HOM05D006745 ORTHO05D008449 1.1e-80 303.9 235 62.1
Ah.02g123330 Amaranthus hybridus HOM05D006745 ORTHO05D008449 4.3e-80 302.0 210 70.0
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 4.3e-80 302.0 197 71.1
Os02g0120300 Oryza sativa ssp. japonica HOM05D006745 ORTHO05D008449 1.2e-79 300.4 206 68.0
Aqoxy6G02103 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 1.6e-79 300.1 197 72.6
ATR0661G256 Amborella trichopoda HOM05D006745 ORTHO05D008449 2.1e-79 299.7 209 66.0
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 2.8e-79 299.3 209 66.5
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 6.2e-79 298.1 206 67.5
Duzib147G0156 Durio zibethinus HOM05D006745 ORTHO05D008449 1.8e-78 296.6 195 75.4
Thecc.01G012900 Theobroma cacao HOM05D006745 ORTHO05D008449 2.3e-78 296.2 199 73.4
CiPaw.07G062000 Carya illinoinensis HOM05D006745 ORTHO05D008449 5.2e-78 295.0 205 74.1
Lalb_Chr09g0321491 Lupinus albus HOM05D006745 ORTHO05D008449 8.9e-78 294.3 196 71.4
unitig_60.g25574 Utricularia gibba HOM05D006745 ORTHO05D008449 4.1e-75 285.4 245 58.8
CSS0012608 Camellia sinensis var. sinensis HOM05D006745 ORTHO05D008449 1.3e-73 280.4 208 71.6
AUR62018011 Chenopodium quinoa HOM05D006745 ORTHO05D008449 8.6e-73 277.7 188 73.9
ClCG01G020530 Citrullus lanatus HOM05D006745 ORTHO05D008449 3.3e-72 275.8 222 61.3
Sp2g00830 Schrenkiella parvula HOM05D006745 ORTHO05D008449 2.2e-68 263.1 199 65.3
Thhalv10023706m.g Eutrema salsugineum HOM05D006745 ORTHO05D008449 1.9e-67 260.0 206 62.6
Atru.chr3.895 Acer truncatum HOM05D006745 ORTHO05D008449 5.4e-67 258.5 207 64.7
Peaxi162Scf00439g00049 Petunia axillaris HOM05D006745 ORTHO05D008449 7.1e-67 258.1 253 55.7
SalBow3G1250 Salvia bowleyana HOM05D006745 ORTHO05D008449 2.7e-66 256.1 188 67.6
AT1G63855 Arabidopsis thaliana HOM05D006745 ORTHO05D008449 1.3e-65 253.8 194 64.9
FvH4_1g11230 Fragaria vesca HOM05D006745 ORTHO05D008449 7.3e-64 248.1 158 74.7
Atru.chr3.884 Acer truncatum HOM05D006745 ORTHO05D008449 2.8e-63 246.1 189 66.1
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 8.9e-62 241.1 199 57.3
CDE05G1799 Ceratophyllum demersum HOM05D006745 ORTHO05D008449 7.6e-61 238.0 160 68.1
FAN28G2493 Fragaria x ananassa HOM05D006745 ORTHO05D008449 8.4e-60 234.6 216 57.9
SMO340G0117 Selaginella moellendorffii HOM05D006745 ORTHO05D008449 1.4e-59 233.8 197 55.8
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 7.8e-58 228.0 203 53.7
Aqoxy278s001 Aquilegia oxysepala HOM05D006745 ORTHO05D008449 2.3e-57 226.5 189 61.9
CARHR047310 Cardamine hirsuta HOM05D006745 ORTHO05D008449 5.1e-57 225.3 149 73.2
Nitab4.5_0002337g0130 Nicotiana tabacum HOM05D006745 ORTHO05D008449 5.1e-57 225.3 187 59.4
Sed0011409 Sechium edule HOM05D006745 ORTHO05D008449 1.8e-54 216.9 246 50.0
Pp3c3_3178 Physcomitrium patens HOM05D006745 ORTHO05D008449 9.0e-54 214.5 199 53.8
Glyma.02G164500 Glycine max HOM05D006745 ORTHO05D008449 4.6e-50 202.2 188 53.7
CARHR047280 Cardamine hirsuta HOM05D006745 ORTHO05D008449 8.7e-49 198.0 126 73.0
arahy.Tifrunner.gnm1.ann1.N8WRPV Arachis hypogaea HOM05D006745 ORTHO05D008449 4.8e-47 192.2 126 71.4
Cpa.g.sc29.52 Carica papaya HOM05D006745 ORTHO05D008449 2.0e-45 186.8 120 73.3
Medtr3g096570 Medicago truncatula HOM05D006745 ORTHO05D008449 8.7e-41 171.4 131 62.6
Medtr3g096562 Medicago truncatula HOM05D006745 ORTHO05D008449 4.8e-39 165.6 117 67.5
MSTRG.17961 Avicennia marina HOM05D006745 ORTHO05D008449 1.6e-34 150.6 89 79.8
Rhsim01G0268300 Rhododendron simsii HOM05D006745 ORTHO05D008449 1.0e-33 147.9 94 76.6
BraA09t37044Z Brassica rapa HOM05D006745 ORTHO05D008449 3.9e-33 146.0 100 70.0
Hund14069 Selenicereus undatus HOM05D006745 ORTHO05D008449 1.3e-25 120.9 83 68.7
SEGI_40099 Sequoiadendron giganteum HOM05D006745 ORTHO05D008449 3.1e-22 109.8 64 75.0
Medtr2g078490 Medicago truncatula HOM05D006745 ORTHO05D008449 2.6e-21 106.7 109 48.6
COL.COLO4_22483 Corchorus olitorius HOM05D006745 ORTHO05D008449 8.2e-15 85.1 51 76.5
BolC4t24505H Brassica oleracea HOM05D006745 ORTHO05D008449 6.9e-14 82.0 59 66.1
Glyma.11G080201 Glycine max HOM05D006745 ORTHO05D008449 3.8e-12 76.3 50 70.0
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 1.1e-11 74.7 166 33.7
SEGI_27117 Sequoiadendron giganteum HOM05D001602 ORTHO05D001470 5.1e-09 65.9 127 38.6
CDE08G1662 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.4e-08 62.8 160 32.5
Ciclev10003913m.g Citrus clementina HOM05D002553 ORTHO05D002767 4.4e-08 62.8 143 32.2
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 7.4e-08 62.0 146 37.0
THA.LOC104818678 Tarenaya hassleriana HOM05D002553 ORTHO05D002767 1.3e-07 61.2 149 33.6
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 1.7e-07 60.8 163 27.0
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 1.7e-07 60.8 162 33.3
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 2.2e-07 60.5 134 32.1
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 2.8e-07 60.1 95 38.9
CDE05G3564 Ceratophyllum demersum HOM05D001602 ORTHO05D001470 4.8e-07 59.3 141 31.9
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 4.8e-07 59.3 134 31.3
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 6.3e-07 58.9 152 30.3
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 8.2e-07 58.5 186 29.6
PGR031G3980 Punica granatum HOM05D002553 ORTHO05D002767 8.2e-07 58.5 143 29.4
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 8.2e-07 58.5 204 28.9
BcaNung04367 Brassica carinata HOM05D002553 ORTHO05D002767 1.1e-06 58.2 147 31.3
Mapoly0059s0066 Marchantia polymorpha HOM05D001602 ORTHO05D001470 1.1e-06 58.2 142 33.8
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 3.1e-06 56.6 152 30.3
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 3.1e-06 56.6 167 30.5
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 3.1e-06 56.6 150 32.7
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 3.1e-06 56.6 151 30.5
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 3.1e-06 56.6 145 31.7
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 4.1e-06 56.2 148 31.1
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 4.1e-06 56.2 156 30.1
Cre17.g747147 Chlamydomonas reinhardtii HOM05D001602 ORTHO05D001470 4.1e-06 56.2 139 33.1
Pp3c6_24550 Physcomitrium patens HOM05D002553 ORTHO05D002767 4.1e-06 56.2 141 28.4
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 4.1e-06 56.2 185 27.0
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 5.3e-06 55.8 147 27.9
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 5.3e-06 55.8 185 27.0
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 5.3e-06 55.8 174 30.5
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 7.0e-06 55.5 147 30.6
Carub.0005s1724 Capsella rubella HOM05D005677 ORTHO05D006966 7.0e-06 55.5 133 30.8
CARHR160400 Cardamine hirsuta HOM05D005677 ORTHO05D006966 7.0e-06 55.5 133 31.6
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 7.0e-06 55.5 204 27.9
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 7.0e-06 55.5 119 32.8
HPP92_021095 Vanilla planifolia HOM05D001602 ORTHO05D001470 7.0e-06 55.5 140 32.9
Aqoxy3G02562 Aquilegia oxysepala HOM05D001602 ORTHO05D001470 9.1e-06 55.1 126 31.7
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 9.1e-06 55.1 148 30.4
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 9.1e-06 55.1 148 30.4
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 9.1e-06 55.1 168 28.6
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 9.1e-06 55.1 179 28.5
SEGI_28475 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 9.1e-06 55.1 166 27.7
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 9.1e-06 55.1 169 30.2


User provided reference genes

Program Settings