Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046945 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 7.7e-48 193.4 89 100.0
CSS0006246 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.6e-29 132.5 124 58.9
CSS0034568 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 4.8e-26 120.9 117 55.6
CSS0015804 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.0e-23 113.2 125 52.8
CSS0049829 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.2e-16 89.7 112 49.1
CSS0019428 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 7.7e-16 87.0 46 89.1
CSS0044825 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.5e-14 82.8 74 56.8
CSS0040407 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 9.5e-14 80.1 51 76.5
vmacro07661 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 9.5e-14 80.1 58 65.5
Hma1.2p1_1039F.1_g250900 Hydrangea macrophylla HOM05D002156 ORTHO05D002328 3.6e-13 78.2 58 65.5
Peaxi162Scf01344g00018 Petunia axillaris HOM05D002156 ORTHO05D002328 2.3e-12 75.5 43 79.1
Rhsim03G0050200 Rhododendron simsii HOM05D002156 ORTHO05D002328 3.0e-12 75.1 58 62.1
Actinidia37813 Actinidia chinensis HOM05D002156 ORTHO05D002328 5.2e-12 74.3 55 63.6
CAN.G752.1 Capsicum annuum HOM05D002156 ORTHO05D002328 1.2e-11 73.2 43 76.7
Cc06_g17240 Coffea canephora HOM05D002156 ORTHO05D002328 1.2e-11 73.2 58 63.8
GSVIVG01025814001 Vitis vinifera HOM05D002156 ORTHO05D002328 1.2e-11 73.2 54 63.0
ClCG04G004550 Citrullus lanatus HOM05D002156 ORTHO05D002328 2.6e-11 72.0 55 61.8
THA.LOC104821409 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 3.4e-11 71.6 55 56.4
Sc07g0007830 Simmondsia chinensis HOM05D002156 ORTHO05D002328 4.4e-11 71.2 49 65.3
THA.LOC104800404 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 5.7e-11 70.9 55 60.0
Nn2g14545 Nelumbo nucifera HOM05D002156 ORTHO05D002328 9.8e-11 70.1 50 62.0
RcHm_v2.0_Chr3g0496221 Rosa chinensis HOM05D002156 ORTHO05D002328 1.3e-10 69.7 46 69.6
Nitab4.5_0001720g0020 Nicotiana tabacum HOM05D002156 ORTHO05D002328 1.7e-10 69.3 43 72.1
THA.LOC104800077 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.7e-10 69.3 48 64.6
MSTRG.10750 Avicennia marina HOM05D002156 ORTHO05D002328 2.2e-10 68.9 50 64.0
QL07p017931 Quercus lobata HOM05D002156 ORTHO05D002328 2.2e-10 68.9 58 56.9
PGSC0003DMG400008732 Solanum tuberosum HOM05D002156 ORTHO05D002328 2.8e-10 68.6 43 72.1
Solyc01g057090.4 Solanum lycopersicum HOM05D002156 ORTHO05D002328 3.7e-10 68.2 43 72.1
Sopen01g021430 Solanum pennellii HOM05D002156 ORTHO05D002328 3.7e-10 68.2 43 72.1
Migut.K00223 Erythranthe guttata HOM05D002156 ORTHO05D002328 4.9e-10 67.8 50 64.0
CiPaw.09G168300 Carya illinoinensis HOM05D002156 ORTHO05D002328 8.3e-10 67.0 49 63.3
Prupe.7G011900 Prunus persica HOM05D002156 ORTHO05D002328 8.3e-10 67.0 41 73.2
DCAR_020655 Daucus carota HOM05D002156 ORTHO05D002328 1.4e-09 66.2 50 60.0
FvH4_1g28540 Fragaria vesca HOM05D002156 ORTHO05D002328 1.4e-09 66.2 46 65.2
FAN19G2483 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.4e-09 66.2 46 65.2
FAN23G2882 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.4e-09 66.2 46 65.2
EL10Ac5g11718 Beta vulgaris HOM05D002156 ORTHO05D002328 1.8e-09 65.9 64 51.6
AUR62038448 Chenopodium quinoa HOM05D002156 ORTHO05D002328 3.1e-09 65.1 72 45.8
Oeu056497.3 Olea europaea HOM05D002156 ORTHO05D002328 4.1e-09 64.7 50 64.0
AUR62036257 Chenopodium quinoa HOM05D002156 ORTHO05D002328 5.4e-09 64.3 58 51.7
MELO3C008849.2 Cucumis melo HOM05D002156 ORTHO05D002328 1.2e-08 63.2 49 61.2
Lj1A1067G36 Lonicera japonica HOM05D002156 ORTHO05D002328 1.2e-08 63.2 53 58.5
MD14G1007100 Malus domestica HOM05D002156 ORTHO05D002328 2.7e-08 62.0 54 53.7
Atru.chr2.1496 Acer truncatum HOM05D002156 ORTHO05D002328 3.5e-08 61.6 52 57.7
CSS0036393 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 3.5e-08 61.6 60 56.7
Ciclev10019878m.g Citrus clementina HOM05D002156 ORTHO05D002328 4.5e-08 61.2 48 58.3
A07p31440 Brassica napus HOM05D002156 ORTHO05D002328 7.8e-08 60.5 46 58.7
COL.COLO4_28629 Corchorus olitorius HOM05D002156 ORTHO05D002328 7.8e-08 60.5 51 54.9
C06p36730 Brassica napus HOM05D002156 ORTHO05D002328 1.0e-07 60.1 46 58.7
BolC6t38783H Brassica oleracea HOM05D002156 ORTHO05D002328 1.0e-07 60.1 46 58.7
BraA07t30779Z Brassica rapa HOM05D002156 ORTHO05D002328 1.0e-07 60.1 46 58.7
Eucgr.A02134 Eucalyptus grandis HOM05D002156 ORTHO05D002328 1.0e-07 60.1 58 50.0
BcaC08g45876 Brassica carinata HOM05D002156 ORTHO05D002328 1.3e-07 59.7 46 58.7
Glyma.16G037000 Glycine max HOM05D002156 ORTHO05D002328 1.3e-07 59.7 44 61.4
Glyma.19G116100 Glycine max HOM05D002156 ORTHO05D002328 1.3e-07 59.7 44 61.4
SalBow1G7226 Salvia bowleyana HOM05D002156 ORTHO05D002328 1.3e-07 59.7 49 59.2
CARHR028160 Cardamine hirsuta HOM05D002156 ORTHO05D002328 1.7e-07 59.3 46 58.7
Lsat_1_v5_gn_1_55260 Lactuca sativa HOM05D002156 ORTHO05D002328 1.7e-07 59.3 47 59.6
SGA_v2.0_scaffold17G07976 Striga asiatica HOM05D002156 ORTHO05D002328 1.7e-07 59.3 43 65.1
Aqoxy1G00521 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 2.3e-07 58.9 43 58.1
BcaB03g15489 Brassica carinata HOM05D002156 ORTHO05D002328 2.3e-07 58.9 46 56.5
Carub.0001s2716 Capsella rubella HOM05D002156 ORTHO05D002328 2.3e-07 58.9 46 56.5
Aqoxy2G00573 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 2.9e-07 58.5 50 56.0
Cpa.g.sc161.28 Carica papaya HOM05D002156 ORTHO05D002328 2.9e-07 58.5 51 51.0
CsaV3_4G011990 Cucumis sativus L. HOM05D002156 ORTHO05D002328 2.9e-07 58.5 48 58.3
TPR.G17860 Trifolium pratense HOM05D002156 ORTHO05D002328 3.9e-07 58.2 43 62.8
MBI11_g23644_MAGBIO Magnolia biondii HOM05D002156 ORTHO05D002328 5.0e-07 57.8 50 52.0
Psat3g087320 Pisum sativum HOM05D002156 ORTHO05D002328 5.0e-07 57.8 44 61.4
AL1G42570 Arabidopsis lyrata HOM05D002156 ORTHO05D002328 6.6e-07 57.4 46 54.3
Duzib128G0733 Durio zibethinus HOM05D002156 ORTHO05D002328 6.6e-07 57.4 39 64.1
Sp5g24790 Schrenkiella parvula HOM05D002156 ORTHO05D002328 6.6e-07 57.4 46 54.3
Ca_08306_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 8.6e-07 57.0 44 59.1
Gohir.A13G163900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 8.6e-07 57.0 48 58.3
AT1G28760 Arabidopsis thaliana HOM05D002156 ORTHO05D002328 1.1e-06 56.6 47 57.4
Lsat_1_v5_gn_2_103620 Lactuca sativa HOM05D002156 ORTHO05D002328 1.1e-06 56.6 39 66.7
Phvul.001G115500 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 1.5e-06 56.2 43 58.1
Gorai.013G195700 Gossypium raimondii HOM05D002156 ORTHO05D002328 2.5e-06 55.5 41 63.4
Lj1g0011130 Lotus japonicus HOM05D002156 ORTHO05D002328 2.5e-06 55.5 44 56.8
Medtr7g086460 Medicago truncatula HOM05D002156 ORTHO05D002328 2.5e-06 55.5 44 59.1
Thecc.05G243200 Theobroma cacao HOM05D002156 ORTHO05D002328 2.5e-06 55.5 51 49.0
arahy.Tifrunner.gnm1.ann1.7VP81J Arachis hypogaea HOM05D002156 ORTHO05D002328 3.3e-06 55.1 44 61.4
arahy.Tifrunner.gnm1.ann1.M0VUV2 Arachis hypogaea HOM05D002156 ORTHO05D002328 3.3e-06 55.1 44 61.4
Gohir.A11G230100 Gossypium hirsutum HOM05D002156 ORTHO05D002328 4.3e-06 54.7 51 47.1
Gohir.D11G241900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 4.3e-06 54.7 51 47.1
Gorai.007G256200 Gossypium raimondii HOM05D002156 ORTHO05D002328 4.3e-06 54.7 51 47.1
Gohir.D13G166800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 5.6e-06 54.3 41 63.4
HanXRQChr11g0348131 Helianthus annuus HOM05D002156 ORTHO05D002328 7.3e-06 53.9 47 55.3
Sed0023631 Sechium edule HOM05D002156 ORTHO05D002328 7.3e-06 53.9 39 64.1
Thhalv10018456m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 9.5e-06 53.5 46 54.3
MD12G1009900 Malus domestica HOM05D002156 ORTHO05D002328 9.5e-06 53.5 46 54.3
PSO384G2429 Papaver somniferum HOM05D002156 ORTHO05D002328 9.5e-06 53.5 44 54.5


User provided reference genes

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