Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 7.8e-53 210.3 114 100.0
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 7.4e-11 70.9 37 86.5
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.1e-10 69.3 34 100.0
MBI03_g02704_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.1e-10 69.3 42 76.2
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 6.2e-10 67.8 34 94.1
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 6.2e-10 67.8 34 94.1
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.1e-09 67.0 34 94.1
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.8e-09 66.2 34 91.2
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 1.8e-09 66.2 34 91.2
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 2.4e-09 65.9 34 88.2
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-09 65.9 34 88.2
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 4.0e-09 65.1 34 88.2
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 4.0e-09 65.1 34 88.2
MBI05_g13276_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 5.3e-09 64.7 41 75.6
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 5.3e-09 64.7 34 88.2
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 5.3e-09 64.7 34 88.2
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 6.9e-09 64.3 34 91.2
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.2e-08 63.5 34 82.4
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 2.0e-08 62.8 34 82.4
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 2.0e-08 62.8 34 85.3
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.0e-08 62.8 34 85.3
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.0e-08 62.8 34 85.3
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.0e-08 62.8 34 82.4
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.6e-08 62.4 34 88.2
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 3.4e-08 62.0 34 82.4
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 3.4e-08 62.0 34 79.4
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 3.4e-08 62.0 34 82.4
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 4.5e-08 61.6 34 79.4
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 9.9e-08 60.5 34 82.4
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 9.9e-08 60.5 34 76.5
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.3e-07 60.1 68 54.4
MBI08_g15145_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D004199 2.2e-07 59.3 34 82.4
MBI15_g16478_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.2e-07 59.3 34 82.4
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 2.2e-07 59.3 34 82.4
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 4.9e-07 58.2 34 79.4
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 8.4e-07 57.4 34 79.4
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 8.4e-07 57.4 34 85.3
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.1e-06 57.0 34 79.4
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.1e-06 57.0 34 82.4
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 1.4e-06 56.6 34 79.4
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 1.9e-06 56.2 36 77.8
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 1.9e-06 56.2 36 77.8
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 1.9e-06 56.2 34 76.5
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 1.9e-06 56.2 34 79.4
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.9e-06 56.2 34 82.4
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.9e-06 56.2 34 82.4
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 1.9e-06 56.2 34 82.4
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 76.5
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 76.5
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 76.5
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 76.5
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 76.5
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 76.5
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 76.5
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 82.4
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 79.4
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 82.4
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 2.4e-06 55.8 34 82.4
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 3.2e-06 55.5 34 76.5
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 3.2e-06 55.5 36 63.9
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.2e-06 55.1 74 45.9
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 4.2e-06 55.1 34 79.4
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 4.2e-06 55.1 34 73.5
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 5.5e-06 54.7 39 64.1
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 5.5e-06 54.7 34 76.5
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 5.5e-06 54.7 34 73.5
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 5.5e-06 54.7 34 76.5
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 7.1e-06 54.3 33 75.8
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 9.3e-06 53.9 39 64.1
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 9.3e-06 53.9 34 79.4
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 9.3e-06 53.9 42 66.7
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 9.3e-06 53.9 34 76.5


User provided reference genes

Program Settings