Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046887 Camellia sinensis var. sinensis HOM05D006529 ORTHO05D008380 1.0e-99 366.7 181 100.0
CSS0016193 Camellia sinensis var. sinensis HOM05D006529 ORTHO05D008380 3.3e-90 335.1 200 87.0
Dinv42286 Davidia involucrata HOM05D006529 ORTHO05D008380 1.1e-72 276.9 208 66.3
Cfa003138 Carpinus fangiana HOM05D006529 ORTHO05D008380 1.5e-71 273.1 197 66.5
Dinv36729 Davidia involucrata HOM05D006529 ORTHO05D008380 1.6e-68 263.1 199 66.3
Actinidia29893 Actinidia chinensis HOM05D006529 ORTHO05D008380 2.7e-68 262.3 214 65.9
vmacro06269 Vaccinium macrocarpon HOM05D006529 ORTHO05D008380 1.8e-67 259.6 203 67.5
Nitab4.5_0004011g0030 Nicotiana tabacum HOM05D006529 ORTHO05D008380 3.0e-67 258.8 197 67.0
CiPaw.04G153200 Carya illinoinensis HOM05D006529 ORTHO05D008380 3.9e-67 258.5 197 63.5
Atru.chr7.1518 Acer truncatum HOM05D006529 ORTHO05D008380 1.1e-66 256.9 199 64.3
Cc06_g10920 Coffea canephora HOM05D006529 ORTHO05D008380 2.6e-66 255.8 199 64.8
TAR624G0297 Trochodendron aralioides HOM05D006529 ORTHO05D008380 2.6e-66 255.8 205 62.9
GSVIVG01015253001 Vitis vinifera HOM05D006529 ORTHO05D008380 2.6e-66 255.8 199 65.3
Ciclev10009577m.g Citrus clementina HOM05D006529 ORTHO05D008380 5.7e-66 254.6 195 63.6
Lj7C671T1 Lonicera japonica HOM05D006529 ORTHO05D008380 1.7e-65 253.1 212 60.4
FAN14G0658 Fragaria x ananassa HOM05D006529 ORTHO05D008380 3.7e-65 251.9 186 65.1
FAN23G2505 Fragaria x ananassa HOM05D006529 ORTHO05D008380 8.2e-65 250.8 199 62.3
ECA240G3812 Erigeron canadensis HOM05D006529 ORTHO05D008380 1.1e-64 250.4 200 61.5
Eucgr.C00932 Eucalyptus grandis HOM05D006529 ORTHO05D008380 1.1e-64 250.4 204 61.3
FvH4_1g06740 Fragaria vesca HOM05D006529 ORTHO05D008380 1.4e-64 250.0 199 62.3
FAN19G1593 Fragaria x ananassa HOM05D006529 ORTHO05D008380 1.4e-64 250.0 199 62.3
RcHm_v2.0_Chr2g0092481 Rosa chinensis HOM05D006529 ORTHO05D008380 1.4e-64 250.0 197 62.9
CAN.G142.8 Capsicum annuum HOM05D006529 ORTHO05D008380 1.8e-64 249.6 197 64.0
Duzib150G0994 Durio zibethinus HOM05D006529 ORTHO05D008380 4.1e-64 248.4 184 63.6
MD02G1072300 Malus domestica HOM05D006529 ORTHO05D008380 2.0e-63 246.1 204 63.2
DCAR_012008 Daucus carota HOM05D006529 ORTHO05D008380 3.5e-63 245.4 204 59.8
Gohir.D05G029600 Gossypium hirsutum HOM05D006529 ORTHO05D008380 3.5e-63 245.4 199 59.3
Gorai.009G029800 Gossypium raimondii HOM05D006529 ORTHO05D008380 3.5e-63 245.4 199 59.3
Prupe.7G215100 Prunus persica HOM05D006529 ORTHO05D008380 5.9e-63 244.6 204 61.8
Manes.16G105400 Manihot esculenta HOM05D006529 ORTHO05D008380 7.7e-63 244.2 204 59.8
Gohir.A05G027800 Gossypium hirsutum HOM05D006529 ORTHO05D008380 1.0e-62 243.8 185 61.6
Nn8g38953 Nelumbo nucifera HOM05D006529 ORTHO05D008380 1.3e-62 243.4 205 60.0
Ca_17386_v3 Cicer arietinum L. HOM05D006529 ORTHO05D008380 1.7e-62 243.0 186 65.6
AUR62000487 Chenopodium quinoa HOM05D006529 ORTHO05D008380 3.8e-62 241.9 199 60.3
Hund07265 Selenicereus undatus HOM05D006529 ORTHO05D008380 3.8e-62 241.9 199 59.8
COL.COLO4_18251 Corchorus olitorius HOM05D006529 ORTHO05D008380 6.5e-62 241.1 212 58.0
Ah.06g190810 Amaranthus hybridus HOM05D006529 ORTHO05D008380 1.5e-61 240.0 200 60.0
PGR142G1231 Punica granatum HOM05D006529 ORTHO05D008380 2.5e-61 239.2 204 58.3
AUR62006831 Chenopodium quinoa HOM05D006529 ORTHO05D008380 4.2e-61 238.4 199 59.8
Haze_25864 Corylus avellana HOM05D006529 ORTHO05D008380 4.2e-61 238.4 197 60.9
AL7G26720 Arabidopsis lyrata HOM05D006529 ORTHO05D008380 5.5e-61 238.0 199 59.8
CARHR233790 Cardamine hirsuta HOM05D006529 ORTHO05D008380 5.5e-61 238.0 199 58.3
Aqoxy7G01329 Aquilegia oxysepala HOM05D006529 ORTHO05D008380 7.2e-61 237.7 200 59.5
AT4G26240 Arabidopsis thaliana HOM05D006529 ORTHO05D008380 7.2e-61 237.7 199 58.8
Thecc.09G094900 Theobroma cacao HOM05D006529 ORTHO05D008380 1.2e-60 236.9 206 57.8
Lalb_Chr05g0223501 Lupinus albus HOM05D006529 ORTHO05D008380 1.6e-60 236.5 201 61.2
Potri.006G153800 Populus trichocarpa HOM05D006529 ORTHO05D008380 1.6e-60 236.5 201 60.7
QL02p063543 Quercus lobata HOM05D006529 ORTHO05D008380 1.6e-60 236.5 237 51.1
A03p56550 Brassica napus HOM05D006529 ORTHO05D008380 2.1e-60 236.1 199 57.8
Nn6g35394 Nelumbo nucifera HOM05D006529 ORTHO05D008380 2.1e-60 236.1 205 58.0
Migut.K00572 Erythranthe guttata HOM05D006529 ORTHO05D008380 3.6e-60 235.3 196 62.8
Thhalv10026289m.g Eutrema salsugineum HOM05D006529 ORTHO05D008380 3.6e-60 235.3 199 57.8
MD15G1202100 Malus domestica HOM05D006529 ORTHO05D008380 3.6e-60 235.3 190 61.6
Sp7g24240 Schrenkiella parvula HOM05D006529 ORTHO05D008380 3.6e-60 235.3 199 58.3
Oeu052123.2 Olea europaea HOM05D006529 ORTHO05D008380 6.1e-60 234.6 218 56.9
Carub.0007s1471 Capsella rubella HOM05D006529 ORTHO05D008380 8.0e-60 234.2 199 58.3
ClCG03G015880 Citrullus lanatus HOM05D006529 ORTHO05D008380 2.3e-59 232.6 186 61.8
Medtr8g101990 Medicago truncatula HOM05D006529 ORTHO05D008380 2.3e-59 232.6 194 60.3
Glyma.08G031000 Glycine max HOM05D006529 ORTHO05D008380 3.0e-59 232.3 200 61.0
MSTRG.10586 Avicennia marina HOM05D006529 ORTHO05D008380 5.2e-59 231.5 197 59.9
CANSAT56G2962 Cannabis sativa HOM05D006529 ORTHO05D008380 5.2e-59 231.5 177 64.4
C07p54750 Brassica napus HOM05D006529 ORTHO05D008380 6.7e-59 231.1 199 56.8
BolC7t45964H Brassica oleracea HOM05D006529 ORTHO05D008380 6.7e-59 231.1 199 56.8
TWI63G1011 Tripterygium wilfordii HOM05D006529 ORTHO05D008380 1.5e-58 229.9 200 57.5
Glyma.05G223900 Glycine max HOM05D006529 ORTHO05D008380 2.0e-58 229.6 183 62.8
HanXRQChr09g0238511 Helianthus annuus HOM05D006529 ORTHO05D008380 2.6e-58 229.2 197 56.3
Lj4g0018594 Lotus japonicus HOM05D006529 ORTHO05D008380 2.6e-58 229.2 200 58.0
BcaC06g32765 Brassica carinata HOM05D006529 ORTHO05D008380 9.7e-58 227.3 200 56.0
arahy.Tifrunner.gnm1.ann1.YG2MQU Arachis hypogaea HOM05D006529 ORTHO05D008380 1.3e-57 226.9 201 56.7
Aqoxy199s004 Aquilegia oxysepala HOM05D006529 ORTHO05D008380 1.7e-57 226.5 193 58.5
VMungo0251G0255 Vigna mungo HOM05D006529 ORTHO05D008380 2.8e-57 225.7 200 58.0
PSO832G0687 Papaver somniferum HOM05D006529 ORTHO05D008380 3.7e-57 225.3 200 56.5
THA.LOC104813489 Tarenaya hassleriana HOM05D006529 ORTHO05D008380 6.3e-57 224.6 199 57.3
arahy.Tifrunner.gnm1.ann1.HB8I5Y Arachis hypogaea HOM05D006529 ORTHO05D008380 8.3e-57 224.2 201 56.2
Psat7g019320 Pisum sativum HOM05D006529 ORTHO05D008380 1.4e-56 223.4 194 60.3
BraA03t14725Z Brassica rapa HOM05D006529 ORTHO05D008380 7.0e-56 221.1 199 54.8
PSO063G6648 Papaver somniferum HOM05D006529 ORTHO05D008380 1.6e-55 219.9 200 55.5
Sed0011062 Sechium edule HOM05D006529 ORTHO05D008380 5.9e-55 218.0 191 59.2
SGA_v2.0_scaffold210G42089 Striga asiatica HOM05D006529 ORTHO05D008380 7.7e-55 217.6 188 60.1
Phvul.002G305700 Phaseolus vulgaris HOM05D006529 ORTHO05D008380 3.8e-54 215.3 200 55.5
SalBow1G6632 Salvia bowleyana HOM05D006529 ORTHO05D008380 5.5e-53 211.5 227 52.0
CDE05G3131 Ceratophyllum demersum HOM05D006529 ORTHO05D008380 1.6e-52 209.9 196 53.6
MELO3C015437.2 Cucumis melo HOM05D006529 ORTHO05D008380 9.8e-50 200.7 186 56.5
CsaV3_UNG050340 Cucumis sativus L. HOM05D006529 ORTHO05D008380 6.6e-46 188.0 135 65.2
TPR.G17281 Trifolium pratense HOM05D006529 ORTHO05D008380 6.8e-43 177.9 141 60.3
Peaxi162Scf00883g01013 Petunia axillaris HOM05D006529 ORTHO05D008380 2.6e-42 176.0 199 51.3
Os01g0559300 Oryza sativa ssp. japonica HOM05D006529 ORTHO05D008380 5.7e-42 174.9 179 48.6
Lsat_1_v5_gn_7_38121 Lactuca sativa HOM05D006529 ORTHO05D008380 1.3e-41 173.7 153 56.9
Zm00001eb356780 Zea mays HOM05D006529 ORTHO05D008380 1.7e-41 173.3 165 50.9
FAN26G1500 Fragaria x ananassa HOM05D006529 ORTHO05D008380 1.3e-38 163.7 210 46.7
CANSAT56G3512 Cannabis sativa HOM05D006529 ORTHO05D008380 1.8e-35 153.3 164 51.2
Sc18g0001790 Simmondsia chinensis HOM05D006529 ORTHO05D008380 6.8e-35 151.4 147 55.8
Cpa.g.sc78.59 Carica papaya HOM05D006529 ORTHO05D008380 3.0e-30 136.0 191 42.4
Aa31LG3G600 Aethionema arabicum HOM05D006529 ORTHO05D008380 3.9e-30 135.6 166 48.8
SalBow1G6389 Salvia bowleyana HOM05D006529 ORTHO05D008380 1.1e-27 127.5 135 51.9
HanXRQChr03g0061021 Helianthus annuus HOM05D006529 ORTHO05D008380 3.1e-27 125.9 102 56.9
CsaV3_1G040070 Cucumis sativus L. HOM05D006529 ORTHO05D008380 8.9e-27 124.4 151 49.0
FAN26G3434 Fragaria x ananassa HOM05D006529 ORTHO05D008380 9.8e-26 120.9 103 57.3
Lalb_Chr09g0331701 Lupinus albus HOM05D006529 ORTHO05D008380 2.2e-25 119.8 69 76.8
Nitab4.5_0009098g0020 Nicotiana tabacum HOM05D006529 ORTHO05D008380 1.6e-23 113.6 85 69.4
Sabra06G0122000 Salix brachista HOM05D006529 ORTHO05D008380 2.3e-22 109.8 102 54.9
FAN27G1398 Fragaria x ananassa HOM05D006529 ORTHO05D008380 1.2e-20 104.0 76 63.2
Sabra06G0121800 Salix brachista HOM05D006529 ORTHO05D008380 4.7e-20 102.1 56 78.6
SHI02792 Sapria himalayana HOM05D006529 ORTHO05D008380 2.3e-19 99.8 119 41.2
SMO164G0011 Selaginella moellendorffii HOM05D006529 ORTHO05D008380 5.8e-18 95.1 165 34.5
HPP92_005506 Vanilla planifolia HOM05D006529 ORTHO05D008380 1.1e-16 90.9 152 38.2
CBR_g10883 Chara braunii HOM05D006529 ORTHO05D008380 5.4e-16 88.6 193 31.1
HanXRQChr03g0061031 Helianthus annuus HOM05D006529 ORTHO05D008380 2.3e-14 83.2 85 51.8
SHI02791 Sapria himalayana HOM05D006529 ORTHO05D008380 6.6e-14 81.6 49 65.3
PGSC0003DMG400015618 Solanum tuberosum HOM05D006529 ORTHO05D008380 1.1e-11 74.3 75 57.3
Sopen08g011810 Solanum pennellii HOM05D006529 ORTHO05D008380 7.6e-10 68.2 46 60.9
Solyc08g041690.1 Solanum lycopersicum HOM05D006529 ORTHO05D008380 1.4e-08 63.9 34 76.5
RcHm_v2.0_Chr7g0226351 Rosa chinensis HOM05D006529 ORTHO05D008380 2.4e-08 63.2 58 55.2
Cre11.g467752 Chlamydomonas reinhardtii HOM05D006529 ORTHO05D008380 1.2e-07 60.8 202 25.2
FAN02G1845 Fragaria x ananassa HOM05D000599 ORTHO05D000554 1.6e-07 60.5 88 44.3
Lalb_Chr09g0331711 Lupinus albus HOM05D006529 ORTHO05D008380 2.7e-07 59.7 45 60.0
Glyma.05G224100 Glycine max HOM05D006529 ORTHO05D008380 3.5e-07 59.3 31 67.7


User provided reference genes

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