Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 5.6e-213 744.2 429 100.0
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.5e-210 734.6 429 94.9
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 3.1e-134 482.6 446 69.7
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 2.0e-125 453.4 455 65.7
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.6e-125 453.0 426 65.0
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 5.8e-125 451.8 426 64.8
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.1e-123 447.6 426 64.3
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 1.2e-122 444.1 441 62.1
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.0e-121 441.0 654 49.1
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 3.9e-121 439.1 473 60.0
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 5.1e-121 438.7 451 61.4
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 1.6e-119 433.7 445 60.2
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.6e-119 433.7 427 60.9
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 2.1e-119 433.3 445 61.8
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 8.1e-119 431.4 455 60.4
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 1.1e-118 431.0 457 59.3
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 1.5e-117 427.2 444 60.8
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.4e-117 425.6 448 59.2
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 5.8e-117 425.2 454 58.6
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 1.3e-116 424.1 453 62.5
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.7e-116 423.7 452 58.0
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 6.4e-116 421.8 452 57.3
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 1.1e-115 421.0 461 57.9
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.9e-115 420.2 427 60.0
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.9e-115 420.2 446 63.7
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 1.0e-113 414.5 436 61.2
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 3.9e-113 412.5 434 59.7
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 8.6e-113 411.4 437 60.4
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 9.5e-112 407.9 439 58.5
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.8e-110 403.7 450 59.1
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 3.1e-110 402.9 432 59.5
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 5.2e-110 402.1 444 57.9
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 6.8e-110 401.7 443 58.7
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 2.6e-109 399.8 431 58.9
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 7.6e-109 398.3 441 56.7
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 7.6e-109 398.3 432 57.4
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 7.6e-109 398.3 454 56.6
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 2.9e-108 396.4 438 58.0
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 3.5e-106 389.4 418 58.9
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 6.0e-106 388.7 430 58.1
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 6.0e-106 388.7 416 59.4
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 1.3e-105 387.5 456 57.5
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.5e-104 384.0 431 57.3
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 1.9e-104 383.6 349 65.3
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 1.9e-104 383.6 435 57.9
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 2.5e-104 383.3 421 57.5
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 7.3e-104 381.7 444 54.7
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 9.6e-104 381.3 416 58.4
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 9.6e-104 381.3 424 58.0
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 3.6e-103 379.4 418 57.4
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 3.6e-103 379.4 435 61.8
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 4.8e-103 379.0 420 57.1
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 1.4e-102 377.5 424 57.5
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 1.4e-102 377.5 424 57.5
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 2.4e-102 376.7 469 54.4
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 4.0e-102 375.9 446 54.7
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 9.0e-102 374.8 427 55.7
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 1.5e-101 374.0 418 57.9
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 2.6e-101 373.2 434 57.4
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 3.4e-101 372.9 427 55.5
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 4.4e-101 372.5 422 58.8
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 7.6e-101 371.7 445 54.6
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 9.9e-101 371.3 389 60.2
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 1.3e-100 370.9 431 57.3
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 2.2e-100 370.2 500 51.2
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 2.9e-100 369.8 418 56.2
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 2.4e-99 366.7 426 59.4
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 3.5e-98 362.8 433 54.0
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 3.0e-97 359.8 304 69.4
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 8.7e-97 358.2 443 53.5
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.1e-96 357.8 355 61.4
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 7.3e-96 355.1 411 56.2
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.3e-95 354.4 450 56.9
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 1.6e-95 354.0 414 54.8
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 1.6e-95 354.0 415 55.2
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 2.1e-95 353.6 411 55.5
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 2.8e-95 353.2 414 60.1
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 7.6e-93 345.1 428 53.3
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.9e-91 340.5 421 51.5
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.9e-91 340.5 452 55.3
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 7.1e-91 338.6 416 54.6
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.2e-90 337.8 431 53.4
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 3.5e-90 336.3 449 51.9
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.6e-90 335.9 461 54.4
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 5.1e-89 332.4 436 56.4
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 1.5e-88 330.9 420 52.6
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 5.6e-88 328.9 440 54.8
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 2.1e-87 327.0 411 51.8
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 2.8e-87 326.6 431 52.7
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 6.2e-87 325.5 424 55.7
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 5.3e-86 322.4 439 53.5
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 2.0e-85 320.5 513 44.2
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 9.3e-83 311.6 411 52.1
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 1.0e-81 308.1 443 53.0
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 6.9e-78 295.4 427 45.9
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.6e-77 293.5 482 49.6
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.2e-74 284.6 420 53.8
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 2.1e-74 283.9 449 50.8
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 7.9e-74 282.0 461 45.1
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.3e-73 281.2 422 48.1
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 3.3e-72 276.6 418 45.2
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 1.3e-71 274.6 293 65.2
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 6.5e-68 262.3 337 53.4
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 1.8e-65 254.2 249 63.1
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 5.0e-60 236.1 268 54.1
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 2.2e-55 220.7 221 60.6
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.8e-54 217.6 298 56.4
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 7.7e-53 212.2 471 43.1
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 5.5e-51 206.1 248 48.8
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.2e-45 188.3 317 41.6
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 1.8e-41 174.5 384 34.6
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 9.4e-35 152.1 318 40.6
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.0e-33 148.7 171 65.5
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 2.6e-32 144.1 247 42.5
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 4.7e-26 123.2 356 34.8
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 7.5e-24 115.9 178 46.6
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 1.3e-23 115.2 178 47.8
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 6.3e-23 112.8 194 51.5
Actinidia03037 Actinidia chinensis HOM05D005934 ORTHO05D005165 6.6e-20 102.8 167 46.1
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 6.2e-18 96.3 162 54.3
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 2.3e-17 94.4 82 64.6
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.0e-16 91.3 145 57.9
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 7.5e-16 89.4 84 60.7
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 7.5e-16 89.4 84 60.7
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 1.9e-11 74.7 50 76.0
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 3.3e-11 73.9 284 28.9
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 7.3e-11 72.8 91 48.4
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 4.9e-07 60.1 80 48.8
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 8.3e-07 59.3 165 34.5
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 3.2e-06 57.4 237 30.4


User provided reference genes

Program Settings