Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046828 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.5e-26 122.1 61 100.0
CSS0031875 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.1e-20 101.7 58 86.2
CSS0001609 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.6e-20 100.9 54 88.9
CSS0022214 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.6e-20 100.9 54 88.9
CSS0014298 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.8e-19 98.6 54 87.0
SalBow8G5190 Salvia bowleyana HOM05D003558 ORTHO05D004392 1.1e-18 95.9 54 83.3
CSS0024989 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.5e-18 95.5 54 83.3
GSVIVG01019594001 Vitis vinifera HOM05D003558 ORTHO05D004392 1.5e-18 95.5 54 83.3
MSTRG.1797 Avicennia marina HOM05D003558 ORTHO05D004392 2.5e-18 94.7 54 83.3
Lj8A204G66 Lonicera japonica HOM05D003558 ORTHO05D004392 2.5e-18 94.7 52 86.5
Duzib128G1157 Durio zibethinus HOM05D003558 ORTHO05D004392 5.7e-18 93.6 52 84.6
Hma1.2p1_0440F.1_g153570 Hydrangea macrophylla HOM05D003558 ORTHO05D004392 5.7e-18 93.6 54 81.5
Thecc.05G207600 Theobroma cacao HOM05D003558 ORTHO05D004392 5.7e-18 93.6 52 84.6
TAR375G0349 Trochodendron aralioides HOM05D003558 ORTHO05D004392 5.7e-18 93.6 52 84.6
TAR425G0004 Trochodendron aralioides HOM05D003558 ORTHO05D004392 5.7e-18 93.6 52 84.6
MELO3C016262.2 Cucumis melo HOM05D003558 ORTHO05D004392 7.4e-18 93.2 52 84.6
Eucgr.E00889 Eucalyptus grandis HOM05D003558 ORTHO05D004392 7.4e-18 93.2 54 79.6
CsaV3_4G006830 Cucumis sativus L. HOM05D003558 ORTHO05D004392 9.7e-18 92.8 52 84.6
Sc01g0010420 Simmondsia chinensis HOM05D003558 ORTHO05D004392 9.7e-18 92.8 52 82.7
arahy.Tifrunner.gnm1.ann1.HE7D3F Arachis hypogaea HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
arahy.Tifrunner.gnm1.ann1.R1RJVJ Arachis hypogaea HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
Cpa.g.sc79.5 Carica papaya HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
CiPaw.12G080800 Carya illinoinensis HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
COL.COLO4_23475 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
COL.COLO4_35445 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
Haze_09103 Corylus avellana HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
Glyma.05G127300 Glycine max HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
Glyma.08G082000 Glycine max HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
MD14G1132800 Malus domestica HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
PSO170G3792 Papaver somniferum HOM05D003558 ORTHO05D004392 1.3e-17 92.4 57 77.2
Phvul.002G197600 Phaseolus vulgaris HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
Prupe.5G124300 Prunus persica HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
VMungo0251G1601 Vigna mungo HOM05D003558 ORTHO05D004392 1.3e-17 92.4 52 82.7
ATR0602G090 Amborella trichopoda HOM05D003558 ORTHO05D004392 1.6e-17 92.0 54 79.6
DCAR_006513 Daucus carota HOM05D003558 ORTHO05D004392 1.6e-17 92.0 52 82.7
vmacro13883 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 1.6e-17 92.0 54 81.5
Duzib177G1044 Durio zibethinus HOM05D003558 ORTHO05D004392 2.2e-17 91.7 52 84.6
Nitab4.5_0002367g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 2.2e-17 91.7 54 79.6
Nitab4.5_0002793g0010 Nicotiana tabacum HOM05D003558 ORTHO05D004392 2.2e-17 91.7 54 79.6
QL02p029625 Quercus lobata HOM05D003558 ORTHO05D004392 2.2e-17 91.7 52 82.7
QL05p030756 Quercus lobata HOM05D003558 ORTHO05D004392 2.2e-17 91.7 52 82.7
SGA_v2.0_scaffold111G31394 Striga asiatica HOM05D003558 ORTHO05D004392 2.2e-17 91.7 54 79.6
CSS0013121 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 2.8e-17 91.3 52 82.7
Lj3g0002122 Lotus japonicus HOM05D003558 ORTHO05D004392 2.8e-17 91.3 52 82.7
Nn2g12717 Nelumbo nucifera HOM05D003558 ORTHO05D004392 3.7e-17 90.9 52 80.8
HanXRQChr14g0460421 Helianthus annuus HOM05D003558 ORTHO05D004392 4.8e-17 90.5 52 82.7
Lalb_Chr07g0188951 Lupinus albus HOM05D003558 ORTHO05D004392 4.8e-17 90.5 52 80.8
Os07g0435100 Oryza sativa ssp. japonica HOM05D003558 ORTHO05D004392 4.8e-17 90.5 54 77.8
PSO017G6909 Papaver somniferum HOM05D003558 ORTHO05D004392 4.8e-17 90.5 57 75.4
Peaxi162Scf00074g00546 Petunia axillaris HOM05D003558 ORTHO05D004392 4.8e-17 90.5 54 79.6
Solyc08g082700.3 Solanum lycopersicum HOM05D003558 ORTHO05D004392 4.8e-17 90.5 54 79.6
Sopen08g030930 Solanum pennellii HOM05D003558 ORTHO05D004392 4.8e-17 90.5 54 79.6
PGSC0003DMG400012259 Solanum tuberosum HOM05D003558 ORTHO05D004392 4.8e-17 90.5 54 79.6
TAR374G0657 Trochodendron aralioides HOM05D003558 ORTHO05D004392 4.8e-17 90.5 52 80.8
vmacro21480 Vaccinium macrocarpon HOM05D003558 ORTHO05D004392 6.3e-17 90.1 52 82.7
Actinidia22742 Actinidia chinensis HOM05D003558 ORTHO05D004392 8.2e-17 89.7 54 79.6
Duzib106G0520 Durio zibethinus HOM05D003558 ORTHO05D004392 8.2e-17 89.7 52 82.7
Peaxi162Scf00117g00921 Petunia axillaris HOM05D003558 ORTHO05D004392 8.2e-17 89.7 54 77.8
AUR62007010 Chenopodium quinoa HOM05D003558 ORTHO05D004392 1.1e-16 89.4 54 75.9
AUR62019874 Chenopodium quinoa HOM05D003558 ORTHO05D004392 1.1e-16 89.4 54 75.9
Ca_13177_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
Ca_18846_v3 Cicer arietinum L. HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
Cc08_g16370 Coffea canephora HOM05D003558 ORTHO05D004392 1.1e-16 89.4 54 77.8
COL.COLO4_08911 Corchorus olitorius HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
ECA246G0145 Erigeron canadensis HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
Eucgr.E00681 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.1e-16 89.4 54 77.8
Eucgr.E00961 Eucalyptus grandis HOM05D003558 ORTHO05D004392 1.1e-16 89.4 54 77.8
FvH4_5g11650 Fragaria vesca HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
FAN04G1402 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
FAN08G1805 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
FAN18G4084 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
FAN18G4304 Fragaria x ananassa HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
Lalb_Chr12g0208821 Lupinus albus HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
Medtr1g016750 Medicago truncatula HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
Psat0s889g0080 Pisum sativum HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
Psat6g019440 Pisum sativum HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
Psat7g261400 Pisum sativum HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
RcHm_v2.0_Chr7g0186141 Rosa chinensis HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
TPR.G13178 Trifolium pratense HOM05D003558 ORTHO05D004392 1.1e-16 89.4 52 80.8
HPP92_006339 Vanilla planifolia HOM05D003558 ORTHO05D004392 1.1e-16 89.4 54 77.8
HPP92_027865 Vanilla planifolia HOM05D003558 ORTHO05D004392 1.1e-16 89.4 54 77.8
Aqoxy2G02732 Aquilegia oxysepala HOM05D003558 ORTHO05D004392 1.4e-16 89.0 52 80.8
MSTRG.13893 Avicennia marina HOM05D003558 ORTHO05D004392 1.4e-16 89.0 52 80.8
HanXRQChr15g0472881 Helianthus annuus HOM05D003558 ORTHO05D004392 1.4e-16 89.0 54 77.8
Nitab4.5_0000357g0410 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.4e-16 89.0 54 77.8
Nitab4.5_0003266g0030 Nicotiana tabacum HOM05D003558 ORTHO05D004392 1.4e-16 89.0 54 77.8
CANSAT21G2039 Cannabis sativa HOM05D003558 ORTHO05D004392 1.8e-16 88.6 52 80.8
CiPaw.11G117400 Carya illinoinensis HOM05D003558 ORTHO05D004392 1.8e-16 88.6 52 80.8
Dinv38812 Davidia involucrata HOM05D003558 ORTHO05D004392 1.8e-16 88.6 54 79.6
Lj4g0003124 Lotus japonicus HOM05D003558 ORTHO05D004392 1.8e-16 88.6 52 78.8
MD06G1111600 Malus domestica HOM05D003558 ORTHO05D004392 1.8e-16 88.6 52 80.8
ClCG07G011380 Citrullus lanatus HOM05D003558 ORTHO05D004392 2.4e-16 88.2 52 80.8
Dinv37501 Davidia involucrata HOM05D003558 ORTHO05D004392 2.4e-16 88.2 54 77.8
FAN13G2808 Fragaria x ananassa HOM05D003558 ORTHO05D004392 2.4e-16 88.2 52 78.8
Lsat_1_v5_gn_3_12881 Lactuca sativa HOM05D003558 ORTHO05D004392 2.4e-16 88.2 52 80.8
PGR042G0055 Punica granatum HOM05D003558 ORTHO05D004392 2.4e-16 88.2 52 80.8
Sed0022053 Sechium edule HOM05D003558 ORTHO05D004392 2.4e-16 88.2 52 80.8
Cfa011973 Carpinus fangiana HOM05D003558 ORTHO05D004392 3.1e-16 87.8 52 80.8
EL10Ac5g12950 Beta vulgaris HOM05D003558 ORTHO05D004392 4.1e-16 87.4 51 78.4
Oeu009980.1 Olea europaea HOM05D003558 ORTHO05D004392 4.1e-16 87.4 54 79.6
TWI81G0268 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 4.1e-16 87.4 54 77.8
AagrBONN_evm.TU.Sc2ySwM_228.783 Anthoceros agrestis HOM05D003558 ORTHO05D004392 5.3e-16 87.0 52 78.8
Ciclev10021697m.g Citrus clementina HOM05D003558 ORTHO05D004392 5.3e-16 87.0 52 78.8
Potri.001G088200 Populus trichocarpa HOM05D003558 ORTHO05D004392 5.3e-16 87.0 54 77.8
Sed0010282 Sechium edule HOM05D003558 ORTHO05D004392 5.3e-16 87.0 52 78.8
Hund11374 Selenicereus undatus HOM05D003558 ORTHO05D004392 5.3e-16 87.0 52 76.9
Zm00001eb413880 Zea mays HOM05D003558 ORTHO05D004392 5.3e-16 87.0 54 74.1
Ah.12g052830 Amaranthus hybridus HOM05D003558 ORTHO05D004392 6.9e-16 86.7 52 76.9
Gohir.1Z049372 Gossypium hirsutum HOM05D003558 ORTHO05D004392 6.9e-16 86.7 52 80.8
Gohir.A08G223500 Gossypium hirsutum HOM05D003558 ORTHO05D004392 6.9e-16 86.7 52 80.8
Gorai.004G260100 Gossypium raimondii HOM05D003558 ORTHO05D004392 6.9e-16 86.7 52 80.8
Nn1g00283 Nelumbo nucifera HOM05D003558 ORTHO05D004392 6.9e-16 86.7 52 80.8
Oeu055020.1 Olea europaea HOM05D003558 ORTHO05D004392 1.5e-15 85.5 53 75.5
Sabra01G0064500 Salix brachista HOM05D003558 ORTHO05D004392 1.5e-15 85.5 52 78.8
Zm00001eb121180 Zea mays HOM05D003558 ORTHO05D004392 1.5e-15 85.5 54 74.1
CBR_g36847 Chara braunii HOM05D003558 ORTHO05D004392 2.0e-15 85.1 52 76.9
DCAR_026273 Daucus carota HOM05D003558 ORTHO05D004392 2.0e-15 85.1 52 78.8
Migut.A00609 Erythranthe guttata HOM05D003558 ORTHO05D004392 2.0e-15 85.1 53 77.4
Manes.01G045195 Manihot esculenta HOM05D003558 ORTHO05D004392 2.0e-15 85.1 52 78.8
Manes.02G006900 Manihot esculenta HOM05D003558 ORTHO05D004392 2.0e-15 85.1 52 78.8
Oeu041397.1 Olea europaea HOM05D003558 ORTHO05D004392 2.0e-15 85.1 54 77.8
Potri.003G142700 Populus trichocarpa HOM05D003558 ORTHO05D004392 2.0e-15 85.1 52 78.8
TWI60G0493 Tripterygium wilfordii HOM05D003558 ORTHO05D004392 2.0e-15 85.1 54 74.1
THA.LOC104817564 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 2.6e-15 84.7 52 78.8
BcaB07g31471 Brassica carinata HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
BcaB07g31496 Brassica carinata HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
BcaC04g22576 Brassica carinata HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
BcaC04g22613 Brassica carinata HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
A09p14400 Brassica napus HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
A09p14640 Brassica napus HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
C09p17320 Brassica napus HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
C09p17720 Brassica napus HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
BolC9t54634H Brassica oleracea HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
BolC9t54666H Brassica oleracea HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
BraA09t37110Z Brassica rapa HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
CARHR046430 Cardamine hirsuta HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
Pp3c17_21360 Physcomitrium patens HOM05D003558 ORTHO05D004392 5.9e-15 83.6 54 72.2
Sp2g00230 Schrenkiella parvula HOM05D003558 ORTHO05D004392 5.9e-15 83.6 52 76.9
Sabra03G0103300 Salix brachista HOM05D003558 ORTHO05D004392 7.7e-15 83.2 52 76.9
Atru.chr9.1940 Acer truncatum HOM05D003558 ORTHO05D004392 1.0e-14 82.8 52 75.0
Sp7g00080 Schrenkiella parvula HOM05D003558 ORTHO05D004392 1.0e-14 82.8 52 75.0
BraA09t37087Z Brassica rapa HOM05D003558 ORTHO05D004392 1.3e-14 82.4 52 75.0
CAN.G567.30 Capsicum annuum HOM05D003558 ORTHO05D004392 1.3e-14 82.4 54 72.2
Thhalv10023640m.g Eutrema salsugineum HOM05D003558 ORTHO05D004392 1.3e-14 82.4 52 75.0
Eucgr.E00943 Eucalyptus grandis HOM05D003558 ORTHO05D004392 2.9e-14 81.3 52 71.2
Eucgr.E00914 Eucalyptus grandis HOM05D003558 ORTHO05D004392 3.8e-14 80.9 54 68.5
Carub.0002s0023 Capsella rubella HOM05D003558 ORTHO05D004392 5.0e-14 80.5 52 75.0
SEGI_23551 Sequoiadendron giganteum HOM05D003558 ORTHO05D004392 5.0e-14 80.5 54 70.4
THA.LOC104809321 Tarenaya hassleriana HOM05D003558 ORTHO05D004392 5.0e-14 80.5 52 75.0
AL7G47120 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 8.5e-14 79.7 52 73.1
Pp3c14_17630 Physcomitrium patens HOM05D003558 ORTHO05D004392 8.5e-14 79.7 54 70.4
Aa31LG2G1510 Aethionema arabicum HOM05D003558 ORTHO05D004392 1.1e-13 79.3 52 73.1
AT5G42040 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 1.1e-13 79.3 52 71.2
Mapoly0071s0017 Marchantia polymorpha HOM05D003558 ORTHO05D004392 1.4e-13 79.0 52 73.1
AL2G10280 Arabidopsis lyrata HOM05D003558 ORTHO05D004392 3.2e-13 77.8 52 71.2
AT1G64520 Arabidopsis thaliana HOM05D003558 ORTHO05D004392 3.2e-13 77.8 52 71.2
Eucgr.E00934 Eucalyptus grandis HOM05D003558 ORTHO05D004392 3.2e-13 77.8 53 66.0
SMO196G0279 Selaginella moellendorffii HOM05D003558 ORTHO05D004392 1.2e-12 75.9 52 71.2
Nitab4.5_0007285g0050 Nicotiana tabacum HOM05D003558 ORTHO05D004392 6.1e-12 73.6 45 77.8
RcHm_v2.0_Chr2g0138681 Rosa chinensis HOM05D003558 ORTHO05D004392 1.0e-11 72.8 57 66.7
FvH4_6g31620 Fragaria vesca HOM05D003558 ORTHO05D004392 5.1e-11 70.5 57 64.9
FAN09G0436 Fragaria x ananassa HOM05D003558 ORTHO05D004392 5.1e-11 70.5 57 64.9
CSS0010814 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 1.1e-10 69.3 54 61.1
PRCOL_00000075 Prasinoderma coloniale HOM05D003558 ORTHO05D004392 2.8e-09 64.7 57 54.4
CSS0017714 Camellia sinensis var. sinensis HOM05D003558 ORTHO05D004392 3.7e-09 64.3 36 83.3
MCO10G293 Micromonas commoda HOM05D003558 ORTHO05D004392 9.1e-08 59.7 56 51.8
Cre17.g708300 Chlamydomonas reinhardtii HOM05D003558 ORTHO05D004392 1.0e-06 56.2 52 55.8
Sc07g0010140 Simmondsia chinensis HOM05D003558 ORTHO05D004392 8.5e-06 53.1 33 69.7


User provided reference genes

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