Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0046825 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 2.9e-34 147.9 70 100.0
CSS0017539 Camellia sinensis var. sinensis HOM05D006445 ORTHO05D008030 9.7e-30 132.9 69 92.8
CSS0045965 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 5.5e-17 90.5 68 69.1
CSS0002004 Camellia sinensis var. sinensis HOM05D002698 ORTHO05D002903 1.3e-10 69.3 48 72.9
Rhsim02G0103900 Rhododendron simsii HOM05D002698 ORTHO05D002903 6.5e-10 67.0 43 76.7
Hma1.2p1_0660F.1_g197560 Hydrangea macrophylla HOM05D002698 ORTHO05D002903 8.5e-10 66.6 68 58.8
Cc09_g00960 Coffea canephora HOM05D002698 ORTHO05D002903 9.4e-09 63.2 45 66.7
Ca_00713_v3 Cicer arietinum L. HOM05D002698 ORTHO05D002903 1.6e-08 62.4 47 61.7
Glyma.09G009400 Glycine max HOM05D002698 ORTHO05D002903 3.6e-08 61.2 47 63.8
Glyma.15G113900 Glycine max HOM05D002698 ORTHO05D002903 3.6e-08 61.2 47 63.8
arahy.Tifrunner.gnm1.ann1.38NIYD Arachis hypogaea HOM05D002698 ORTHO05D002903 6.1e-08 60.5 47 63.8
arahy.Tifrunner.gnm1.ann1.83IVCD Arachis hypogaea HOM05D002698 ORTHO05D002903 6.1e-08 60.5 47 63.8
vmacro15775 Vaccinium macrocarpon HOM05D002698 ORTHO05D002903 6.1e-08 60.5 43 69.8
SalBow1G0917 Salvia bowleyana HOM05D002698 ORTHO05D002903 8.0e-08 60.1 60 53.3
Phvul.006G143900 Phaseolus vulgaris HOM05D002698 ORTHO05D002903 1.0e-07 59.7 47 61.7
MSTRG.7172 Avicennia marina HOM05D002698 ORTHO05D002903 2.3e-07 58.5 66 50.0
TAR626G1298 Trochodendron aralioides HOM05D002698 ORTHO05D002903 3.0e-07 58.2 45 64.4
Actinidia26869 Actinidia chinensis HOM05D002698 ORTHO05D002903 4.0e-07 57.8 32 81.2
VMungo0540G1252 Vigna mungo HOM05D002698 ORTHO05D002903 5.2e-07 57.4 47 59.6
Atru.chr1.2479 Acer truncatum HOM05D002698 ORTHO05D002903 6.7e-07 57.0 47 66.0
Nitab4.5_0000143g0370 Nicotiana tabacum HOM05D002698 ORTHO05D002903 6.7e-07 57.0 45 66.7
Actinidia02321 Actinidia chinensis HOM05D002698 ORTHO05D002903 8.8e-07 56.6 32 81.2
Thecc.06G231800 Theobroma cacao HOM05D002698 ORTHO05D002903 1.5e-06 55.8 55 58.2
Lalb_Chr20g0119181 Lupinus albus HOM05D002698 ORTHO05D002903 2.0e-06 55.5 46 60.9
TWI38G1017 Tripterygium wilfordii HOM05D002698 ORTHO05D002903 2.6e-06 55.1 53 50.9
Duzib192G0540 Durio zibethinus HOM05D002698 ORTHO05D002903 3.3e-06 54.7 57 57.9
Nn1g07341 Nelumbo nucifera HOM05D002698 ORTHO05D002903 4.4e-06 54.3 46 58.7
MSTRG.16018 Avicennia marina HOM05D002698 ORTHO05D002903 5.7e-06 53.9 45 60.0
Nitab4.5_0013359g0020 Nicotiana tabacum HOM05D002698 ORTHO05D002903 5.7e-06 53.9 32 78.1
CiPaw.09G101400 Carya illinoinensis HOM05D002698 ORTHO05D002903 7.5e-06 53.5 66 48.5
Ciclev10016689m.g Citrus clementina HOM05D002698 ORTHO05D002903 7.5e-06 53.5 47 61.7
Oeu044416.1 Olea europaea HOM05D002698 ORTHO05D002903 7.5e-06 53.5 48 52.1
Medtr2g025490 Medicago truncatula HOM05D002698 ORTHO05D002903 9.7e-06 53.1 47 59.6
Psat1g177000 Pisum sativum HOM05D002698 ORTHO05D002903 9.7e-06 53.1 47 59.6
QL10p003592 Quercus lobata HOM05D002698 ORTHO05D002903 9.7e-06 53.1 47 59.6
TWI63G0242 Tripterygium wilfordii HOM05D002698 ORTHO05D002903 9.7e-06 53.1 64 43.8


User provided reference genes

Program Settings